Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00817 ATGCTTTGTAACAGGTTAACTCCATTAGAACTGCAGCCAAAGTTTTCATTTGAGAATATCTTTATGGCTTATGGTAGTTCTAGATCCGTAAGGTTCCAAGACGATCTTGAATCATCTGCCCTGCCTACTATCAATGGTGGTGGTGTGACAAAGATCATATACAATATTGATGGCACACAGATACCGGAATCAAGTGGCAAGAGGACAGCAGCTTCTAGGAAGTCTGGACGATCCCTGAGAGCTAAAGTTTTATCTAGAGTTTTCTCAGAGGATTATGAGAGAGTACAAAGAAAAATACTGGATCCTAGGGGGCAAGTCATAAGGCGATGGAATAAGATATTTTTAGTTGCTTGTTTAGTCTCTTTGTTTGTAGACCCTCTTTTCTTTTACTTGCCTGTGGTCAGGGATAAGGTGTGTATTGATATAGGAGTAGGTCTTGAAGTCGTCCTCACAACTATAAGATCTATAGCTGATGTTTTCTACACAATTCAGATTTTCATTAAGTTTCGTACAGCTTATGTTGCGCCCTCTTCTCGTGTATTTGGGAGAGGAGAGCTTGTTATAGATCCCTGTAAGATAGCAATAAGGTATCTACGCCATGGATTTTGGATTGATCTCATTGCAGCCGTGCCAGTTCCCCAGGTACTGATCTGGATTGTCATTCCCAACCTTAGTGGTTCAACAATGACTAACACCAAGAACTTTCTAAGGTTCTTTCTCATATTCCAGTACCTCCCAAGGCTTTTTCTCATATTTCCTCTCTCAACACAAATTGTTAAAGCCACTGGACTTGTGACACAAACAGCATGGGCTGGAGCTGCTTATAACCTGATTCTTTATATGTTGGCAAGCCATGTTTTAGGAGCCTGCTGGTACCTTCTTTCAATTGAGCGACAAGAAGCATGCTGGAGAAGACTTTGTTATTTGGACAAATCTTGTAAAGATGGATTTTTTGATTGTCATAAGGTTGATGACCCTCAAAGGGATTCATGGTTTAATACGAGCAACATTAAAAGCTTATGCAATCCAAATGGTTCCTTTTATCAATTTGGTATATATGGTGATGCAATAACTTTCCGTGTCACAACCTCACCTTTTTTCAACAAGTACTTCTACTGTCTTTGGTGGGGCCTGAAAAATCTCAGTTCCTTGGGACAAAATCTTGCCACAAGCACTTTTGTTGGGGAAATAATTTTTGCCATTATTGTGGCAACTCTTGGACTGGTTCTGTTTGCATTGCTCATTGGTAATATGCAGAAATATCTCCAATCGACAACAGTTCGATTAGAAGAGTGGAGAATAAGGAGAACTGATACAGAACAATGGATGCACCACAGGCAACTACCTCCAGAACTCAGACAATCTGTCCGCAGATATGATCAGTATAAGTGGGTAGCAACTCGAGGAGTCGATGAAGAAGTGCTGCTTAGAAGCCTTCCCTTGGATCTCCGGAGAGATATAAAACGTCACCTTTGCCTTGACCTCGTTCGAAGG 1494 40.96 MLCNRLTPLELQPKFSFENIFMAYGSSRSVRFQDDLESSALPTINGGGVTKIIYNIDGTQIPESSGKRTAASRKSGRSLRAKVLSRVFSEDYERVQRKILDPRGQVIRRWNKIFLVACLVSLFVDPLFFYLPVVRDKVCIDIGVGLEVVLTTIRSIADVFYTIQIFIKFRTAYVAPSSRVFGRGELVIDPCKIAIRYLRHGFWIDLIAAVPVPQVLIWIVIPNLSGSTMTNTKNFLRFFLIFQYLPRLFLIFPLSTQIVKATGLVTQTAWAGAAYNLILYMLASHVLGACWYLLSIERQEACWRRLCYLDKSCKDGFFDCHKVDDPQRDSWFNTSNIKSLCNPNGSFYQFGIYGDAITFRVTTSPFFNKYFYCLWWGLKNLSSLGQNLATSTFVGEIIFAIIVATLGLVLFALLIGNMQKYLQSTTVRLEEWRIRRTDTEQWMHHRQLPPELRQSVRRYDQYKWVATRGVDEEVLLRSLPLDLRRDIKRHLCLDLVRR 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11708053 11710892 - Chy11G193970.1 Chy11g00817 236578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00817 498 PANTHER - 27 498 - -
Chy11g00817 498 Pfam Ion transport protein 110 428 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Chy11g00817 498 Gene3D Helix hairpin bin 428 492 - -
Chy11g00817 498 SUPERFAMILY Voltage-gated potassium channels 101 423 - -
Chy11g00817 498 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 27 498 - -
Chy11g00817 498 SUPERFAMILY cAMP-binding domain-like 431 497 IPR018490 -
Chy11g00817 498 PRINTS EAG/ELK/ERG potassium channel family signature 165 174 IPR003938 GO:0005249|GO:0006813|GO:0016020
Chy11g00817 498 PRINTS EAG/ELK/ERG potassium channel family signature 414 423 IPR003938 GO:0005249|GO:0006813|GO:0016020
Chy11g00817 498 PRINTS EAG/ELK/ERG potassium channel family signature 464 471 IPR003938 GO:0005249|GO:0006813|GO:0016020
Chy11g00817 498 PRINTS EAG/ELK/ERG potassium channel family signature 282 292 IPR003938 GO:0005249|GO:0006813|GO:0016020
Chy11g00817 498 PRINTS EAG/ELK/ERG potassium channel family signature 396 407 IPR003938 GO:0005249|GO:0006813|GO:0016020
Chy11g00817 498 PRINTS EAG/ELK/ERG potassium channel family signature 370 387 IPR003938 GO:0005249|GO:0006813|GO:0016020
Chy11g00817 498 Gene3D - 114 425 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00288 Chy-Chr4:2602983 Chy11g00817 Chy-Chr11:11708053 3.08E-94 dispersed
Chy06g01239 Chy-Chr6:11307030 Chy11g00817 Chy-Chr11:11708053 2.77E-88 dispersed
Chy09g01430 Chy-Chr9:15884045 Chy11g00817 Chy-Chr11:11708053 8.88E-90 dispersed
Chy12g01580 Chy-Chr12:19306842 Chy11g00817 Chy-Chr11:11708053 1.28E-105 dispersed
Chy04g00327 Chy-Chr4:2913339 Chy11g00817 Chy-Chr11:11708053 4.12E-10 transposed
Chy04g00350 Chy-Chr4:3112466 Chy11g00817 Chy-Chr11:11708053 7.03E-08 transposed
Chy11g00817 Chy-Chr11:11708053 Chy08g00837 Chy-Chr8:15861438 3.16E-96 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00817 K05391 - csv:101210775 947.962