Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00820 ATGGCTTCCTCTAGACTCATTTCTCCTACTCCTAGTTCTAGTCCTAGTCCTATTGAAGCTCAAAAGATCGACACTACATGGCATGATGGACGTGCCACTTTCTACGGTGACTTTAGAGGTGGTGAAACTATGGAAGGAGCTTGTGGATATGGCAATCTATTCCACCAAGGTTATGGGCTCGCAACAGCAGCACTAAGCACAGCATTGTTCAACAATGGTGAAGCTTGTGGAGCATGTTTTGAGATAATGTGTGTGAACAACGAACATAATTGGTGCAAACCAAATGCAGGCACAATCAAAATAACAGCTACAAACTTCTGCCCTCCAAACTACACAAAAACACAAGACATTTGGTGCAATCCACCCCAACGCCATTTTGATCTATCTCTCTACATGTTCACCAAAATGGCTCCTTACAGGGCTGGGGTCATTCCTGTTCGCTACCGTAGAACACGTTGCCATAAACTAGGAGGCATACGGTTTGAGTTGAAAGGAAACCCATATTGGCTTCTTGTTTTGCCCTACAATGTTGGTGGTGCTGGTGACGTTGTTGACCTTCAGATTAAAGGCTCTTCTACTGGCCGTTGGCTCCCAATGAAAAGGAATTGGGGCCAAAATTGGGAAGTTGACAGTTATTTGGTTGGGCAGAGTTTGTCTTTTAGAGTTACTACTAGTGATTGGAAGACTAAAGAGTTTGATAATATGAAGATAAGAGAGATTCAAGCTACAAAGAACTTGGGACAATCTGTTTGTGAAACTGATAAGATGACATTCCCAATCTCTGTTTCTGTTACAATGGCAAACAACTGGAGGAAGGTGAAGATGGCTCTTGGCAATGGTTTGTGTCTTCATCTTCCTCATGTTGCTGGAGATTCCACAACCTCTAGTACCCAATCCCTTTCTCCTTTGCCTCCTAATTCTAATTGCCGCCAATCCACGCCGACCCATTCATTCTCTACTCCCCGTGTTTCCAAATCCGGATCAAGGTCTTCTAAGAGGACCTGTGCAATATGCTTGACCACCATGAAAGCGGGGAATGGACAAGCTATTTTCACCGCTGAGTGCTCTCATTCTTTTCACTTCCAGTGCATTACTTCAAATGTAAAGCATGGGAACCAAATTTGCCCTGTTTGCAGAGCAAAATGGAAAGAAATTCCTTTTCAAAATACCAGTTCTGATTGTGCTAGGCCTAGAACCAACCCTGCAGGTTTGGCCCCTGATGATCCATGGATGACGATTGTTCGACGGATGCCTCCTCCACGCAGCAGTACAACTAGACAAATCACCTCTCTTTTTCATGGCCCTGAACCTGTAGCTTATGATGATGATGAAGTTTTAGATCAACAACCTCATGCCACAGAGAGAAACACAACAAATGATGGTGCCAGTGTTCATAGTTGCACTGATAAAGTAGAGGTCGAAATGTACCCAGAAATTTCAGCTGTTCCAAGATCAGTTTCTCATGATCATTTCTCTGTGTTAGTCCATGTCAAGGCTCCTCTCTCCATTGCAACAGTAAATAGCTCAAGAAACCAGGCTGCATTGCCTCCATTGAATCAACCTTCTCGTGCACCAGTTGACCTCGTAACTGTGCTTGATGTTAGTGGCAGTATGGCTGGCACCAAACTTGCTCTACTCAAACGTGCAATGGGTTTTGTGATCCAGAATCTTGGCCCTTCCGATCGACTTTCTGTTGTATCGTTCTCCTCGACAGCTCGTCGCCTTTTCCCACTTTGTCGAATGACAGATGCTGGACGACTGCAGGCATTGCAGGCTGTCAATTCTTTAAGATCAAACGGTGGGACAAACATTGCTGAAGGCTTGAGGAAAGGTGCCAAGGTGTTGGTAGACCGCAAGTTGAAGAACCCTGTTGGTAGCATTATATTACTCTCTGATGGGCAGGATACATATACTTTTAATGGTCCTAGCAGTGCTCGTCCTCAAATAGATTATCAATCCCTCCTTCCAGTTTCAATCCATCGCAGTAACCGATCAGCAATGCAGCAGATTCCTGTGCATACGTTTGGCTTTGGCACCGATCACGACGCTGTGACGATGCACACGATTTCTGACACATCTGGTGGCACGTTTTCATTCATAGAAACCGAAAGCACCATCCAGGATGCATTTGCTCAGTGCATTGGTGGCCTGTTGAGCGTGGTGGTGCAGGATCTGCAAGTTGAAGTGAGATGCGTTCACCCAAGTTTGCAGCTTGGCTTGATACGAGCAGGAAGTTACCAAGCCAGCATCTCAGAACGTGCTAGACTAGGCTCCATTTTCTTTGGAGACTTGTATGCTGAAGAAGAGAGGGACTTTCTGGTGACACTCAACATTCCGGTTGATGAGTTTGGAGGTGAGATGCCATTGCTCAAAGTTAAATGCGTTTACAACGACCCCATTACCAAAGAGACAATCACTTTAGCAAATGAAAGTGAGGTTCAAATACTGAGGCCGGATACCGTAGGCGATCAAGTAGTGTCATTGGAAGTCGACAGACAGCGAAATAGATTCCGTGCATCAGAGGCAATATCCGAGGCCAGAGTTGCTGCGGAGCGTGGTGATTTAGCCGGTGCAGTGTCTGTGTTGAACAATTGTTACAGAACTGTGTTTGAATCAGCATCTGCTCAAACTGGTGACCAATTATGTGCCGCTCTTTGCGCTGAGCTGAAGGAAATGCAGGAGAGAATGGCGACTCGCCACATCTACGAGTCCTCTGGACGAGCTTATGTGCTGTCGGGATTGAGCTCACATTCATGGCAGAGAGCAACTGCTAGAGGGGATTCAGTGGACATGGGAAGTGCAGTGCAAAGTTATCAAACGCAGTCAATGGTAGACATGGTGTCTCGTTCTCAGACCATGATACTAGGGCCGCCACCGTCTCAAAGAACACTTCGTCCCACTCATTCTTTTCCAGTCAGAGCACCGCAACCGTCACCACCACAGTAA 2946 45.99 MASSRLISPTPSSSPSPIEAQKIDTTWHDGRATFYGDFRGGETMEGACGYGNLFHQGYGLATAALSTALFNNGEACGACFEIMCVNNEHNWCKPNAGTIKITATNFCPPNYTKTQDIWCNPPQRHFDLSLYMFTKMAPYRAGVIPVRYRRTRCHKLGGIRFELKGNPYWLLVLPYNVGGAGDVVDLQIKGSSTGRWLPMKRNWGQNWEVDSYLVGQSLSFRVTTSDWKTKEFDNMKIREIQATKNLGQSVCETDKMTFPISVSVTMANNWRKVKMALGNGLCLHLPHVAGDSTTSSTQSLSPLPPNSNCRQSTPTHSFSTPRVSKSGSRSSKRTCAICLTTMKAGNGQAIFTAECSHSFHFQCITSNVKHGNQICPVCRAKWKEIPFQNTSSDCARPRTNPAGLAPDDPWMTIVRRMPPPRSSTTRQITSLFHGPEPVAYDDDEVLDQQPHATERNTTNDGASVHSCTDKVEVEMYPEISAVPRSVSHDHFSVLVHVKAPLSIATVNSSRNQAALPPLNQPSRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQNLGPSDRLSVVSFSSTARRLFPLCRMTDAGRLQALQAVNSLRSNGGTNIAEGLRKGAKVLVDRKLKNPVGSIILLSDGQDTYTFNGPSSARPQIDYQSLLPVSIHRSNRSAMQQIPVHTFGFGTDHDAVTMHTISDTSGGTFSFIETESTIQDAFAQCIGGLLSVVVQDLQVEVRCVHPSLQLGLIRAGSYQASISERARLGSIFFGDLYAEEERDFLVTLNIPVDEFGGEMPLLKVKCVYNDPITKETITLANESEVQILRPDTVGDQVVSLEVDRQRNRFRASEAISEARVAAERGDLAGAVSVLNNCYRTVFESASAQTGDQLCAALCAELKEMQERMATRHIYESSGRAYVLSGLSSHSWQRATARGDSVDMGSAVQSYQTQSMVDMVSRSQTMILGPPPSQRTLRPTHSFPVRAPQPSPPQ* 982
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11728656 11739479 - Chy11G194000.1 Chy11g00820 236581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00820 981 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 158 IPR007112 -
Chy11g00820 981 SUPERFAMILY RING/U-box 329 385 - -
Chy11g00820 981 MobiDBLite consensus disorder prediction 953 981 - -
Chy11g00820 981 CDD vWA_C3HC4_type 526 701 - -
Chy11g00820 981 Pfam RING-like zinc finger 335 364 IPR001841 -
Chy11g00820 981 ProSiteProfiles VWFA domain profile. 527 714 IPR002035 -
Chy11g00820 981 PRINTS Expansin signature 133 146 IPR002963 GO:0009664
Chy11g00820 981 PRINTS Expansin signature 85 96 IPR002963 GO:0009664
Chy11g00820 981 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Chy11g00820 981 PRINTS Expansin signature 157 169 IPR002963 GO:0009664
Chy11g00820 981 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Chy11g00820 981 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Chy11g00820 981 PRINTS Expansin signature 116 133 IPR002963 GO:0009664
Chy11g00820 981 PRINTS Expansin signature 169 190 IPR002963 GO:0009664
Chy11g00820 981 SMART ring_2 335 378 IPR001841 -
Chy11g00820 981 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 235 IPR007117 -
Chy11g00820 981 SUPERFAMILY Barwin-like endoglucanases 26 176 IPR036908 -
Chy11g00820 981 Pfam Lytic transglycolase 62 148 IPR009009 -
Chy11g00820 981 MobiDBLite consensus disorder prediction 953 967 - -
Chy11g00820 981 ProSiteProfiles Zinc finger RING-type profile. 335 379 IPR001841 -
Chy11g00820 981 MobiDBLite consensus disorder prediction 1 20 - -
Chy11g00820 981 Gene3D - 11 154 IPR036908 -
Chy11g00820 981 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 268 973 - -
Chy11g00820 981 SUPERFAMILY vWA-like 523 714 IPR036465 -
Chy11g00820 981 SUPERFAMILY PHL pollen allergen 157 234 IPR036749 -
Chy11g00820 981 CDD RING-H2 335 379 - -
Chy11g00820 981 SMART VWA_4 525 710 IPR002035 -
Chy11g00820 981 MobiDBLite consensus disorder prediction 293 328 - -
Chy11g00820 981 Gene3D - 158 246 IPR036749 -
Chy11g00820 981 PRINTS Expansin/Lol pI family signature 141 157 IPR007118 GO:0005576
Chy11g00820 981 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Chy11g00820 981 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Chy11g00820 981 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Chy11g00820 981 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Chy11g00820 981 Pfam VWA / Hh protein intein-like 879 952 IPR032838 -
Chy11g00820 981 Pfam von Willebrand factor type A domain 527 711 IPR002035 -
Chy11g00820 981 PANTHER RETROELEMENT POL POLYPROTEIN-LIKE 268 973 - -
Chy11g00820 981 Gene3D von Willebrand factor, type A domain 527 715 IPR036465 -
Chy11g00820 981 Pfam Expansin C-terminal domain 159 234 IPR007117 -
Chy11g00820 981 SMART dpbb_1 62 148 IPR007112 -
Chy11g00820 981 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 386 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy11g00820 Chy12g00786 CCT
Chy11g00820 Chy12g00786 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00489 Chy-Chr2:2992713 Chy11g00820 Chy-Chr11:11728656 2.03E-36 dispersed
Chy02g00786 Chy-Chr2:4883047 Chy11g00820 Chy-Chr11:11728656 5.21E-72 dispersed
Chy03g00948 Chy-Chr3:13040003 Chy11g00820 Chy-Chr11:11728656 0 dispersed
Chy03g01284 Chy-Chr3:15861472 Chy11g00820 Chy-Chr11:11728656 3.80E-90 dispersed
Chy11g00820 Chy-Chr11:11728656 Chy09g00397 Chy-Chr9:3497307 4.71E-78 dispersed
Chy11g00820 Chy-Chr11:11728656 Chy12g00786 Chy-Chr12:12268962 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00820 - - csv:101217919 1368.6