Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00843 ATGTCTTCTCGTCCTTCCGCCTTCGATGCTCTCATGTCTGGTGCTCGTGCCGCTGCCAAGAAGAAGCCTGCTAATTCTTCTCCCAAGAAGCGTAAAGCCCTTGATTCTTTAGATCCTCCTCTGAAACCTAGCTCTTTCCTCGCTCTTGAGTCAACGCCGCCTGTTGAATCGCAGTGCGGCAGTTCAGTTTCAAATTTGGACGATCATGGAGGTACTCATTTGGATGGTGTCGATTTGGGAGAAACCAAGTTGCGTCAGGATAATGATGGCGGTATTGGAGCCAAGATTGGGCCGTTTGGTAACAAGACTTGTGCGTCTAGTGTTCAAGAAAGAACAGCGAAATTGAAGAGCTCTACTGCAGAGTTGAAAAAGAAGGCTAAGGATTTCAACTCGAAGAATGTCGCATGTTGGAAAGAGGGTGAACGTGTTCCTTTTTTGTTTCTATGTTTGGGGTTCGATATGATTTCGGAGGAGTCCAGTAGGATTACTATCACTGATATAGTCTGCAACATGCTGAGGACCGTCATGGATACTACACCCGACGACTTGGTAGCCACTGTGTATCTTTTGGCGAATAAGATTGCTCCAGCTCATGAAGGGCTTGAGTTGGGGATTGGGGATGCTTCTATTATCAAAGCTCTTTCTGAGGCATTTGGGAGGACAGAGGCACAGGTCAAAAAGCAGTACAAGGAATTGGGAGATTTGGGTCTTGTTGCTAAAGCTAGCCGTTCATCTCAATCTATGATGCGAAAGCCCGATGCTTTAACTGTTACCAAAGTATTTGACACATTTCGACTGATTGCTAAGGAATCTGGCAAGGATAGTCAGGAGAAGAAAAAGAATCATATCAAGTCACTGCTTGTTGCTGCCACTGACTGTGAACCTTTATATCTGATTAGATTGCTGCAGACAAAATTGCGAATTGGACTTGCTGAGCAGACTCTTTTAGCTGCATTAGGACAAGCAGCTGTATATTCTGAAAAGCACTCAACACCACCTCCGAATATTCAATCCCCTCTAGAAGAGGCTTCTAAGATTGTAAAGCAGGTGTATTCTATACTTCCAGTTTATGACAAACTTGTTCCTGCTCTTCTTAGTGGTGGTGTGTGGAATCTTTCAAAAACATGCAACTTTACACCGGGAATTCCAATTGGACCCATGCTGGCAAAACCAACAAAAGGAGTGTCTGAGATCTTAAATAAATTCCAGGGTTTGGAATTTACTTGTGAATACAAATATGATGGGGAACGTGCCCAGATACATTACATGGAAGATGGTTCAGTTGAGATATATAGTCGAAATGCTGAACGGAACACAGGAAAGTTCCCTGATGTTGTTCTCACAGTATCAAGGATAAAGAAACCATCTGTAAGATCATTTATTTTGGATTGTGAACTTGTTGCTTATGATCGTGGAAAACAAAAGATTCTACCCTTTCAGATTCTGAGTACTCGAGCTCGTAAGAATGTGGCCGTGAGTGATATTAAGGTTGAAGTGTGTGTATTTGCTTTTGATTTACTCTATCTTGATGGTCAACCTCTTATCCAGAGAGAACTTAATGTTCGTCGAGAGCTTCTCTACAATTCATTTATTGAAGAATCTGGATATTTTCAATTTGCCACAGCAATAATAACAAATGATCTTGAGGAAATACAAAAGTTCCTTGATGCATCAGTTGATCAAAGCTGTGAGGGTTTAATCATCAAAACACTGAACCGGGATGCCACTTATGAGCCTTCCAAGAGGTCTCATAACTGGCTAAAACTGAAGAAGGATTACATAGACAGCATAGGGGATTCACTTGATCTGGTACCGATTGCTGCCTTCCATGGCCGTGGGAAACGTACAGGTGTCTATGGTGCATTTCTCCTTGCCTGCTATGATAATGACAATGAAGAATTTCAAAGTATTTGTAAGATAGGAACTGGGTTTTCTGAAGCAATGCTTGAGGAACGTTCTGCTAGTCTCCGTTCTAAAGTCATCCCTGAACCAAAGTCATATTATCGGTATGGAGATACAATCAATCCAGATGTTTGGTTTGAGCCAACTGAGGTTTGGGAGGTTAAAGCTGCAGACTTGACTATTAGCCCAGTTCATCGTGCAGGAGTCGGCATTGTGGACTCTGACAAGGGAATTTCTCTCCGATTTCCACGTCTTGTTCGTGTGAGGAAAGACAAAAATCCAGAGGAAGCCTCATCATCAGAGCAGGTTGCCGACATGTATAATGCTCAGAAACACAACCACCAGAACAATCAAGATGACAATGAAGACGACTAA 2277 42.6 MSSRPSAFDALMSGARAAAKKKPANSSPKKRKALDSLDPPLKPSSFLALESTPPVESQCGSSVSNLDDHGGTHLDGVDLGETKLRQDNDGGIGAKIGPFGNKTCASSVQERTAKLKSSTAELKKKAKDFNSKNVACWKEGERVPFLFLCLGFDMISEESSRITITDIVCNMLRTVMDTTPDDLVATVYLLANKIAPAHEGLELGIGDASIIKALSEAFGRTEAQVKKQYKELGDLGLVAKASRSSQSMMRKPDALTVTKVFDTFRLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQTKLRIGLAEQTLLAALGQAAVYSEKHSTPPPNIQSPLEEASKIVKQVYSILPVYDKLVPALLSGGVWNLSKTCNFTPGIPIGPMLAKPTKGVSEILNKFQGLEFTCEYKYDGERAQIHYMEDGSVEIYSRNAERNTGKFPDVVLTVSRIKKPSVRSFILDCELVAYDRGKQKILPFQILSTRARKNVAVSDIKVEVCVFAFDLLYLDGQPLIQRELNVRRELLYNSFIEESGYFQFATAIITNDLEEIQKFLDASVDQSCEGLIIKTLNRDATYEPSKRSHNWLKLKKDYIDSIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDVWFEPTEVWEVKAADLTISPVHRAGVGIVDSDKGISLRFPRLVRVRKDKNPEEASSSEQVADMYNAQKHNHQNNQDDNEDD* 759
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11936898 11943664 - Chy11G194230.1 Chy11g00843 236604

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00843 758 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 378 596 - -
Chy11g00843 758 Pfam ATP dependent DNA ligase domain 386 590 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Chy11g00843 758 SUPERFAMILY Nucleic acid-binding proteins 598 744 IPR012340 -
Chy11g00843 758 MobiDBLite consensus disorder prediction 724 758 - -
Chy11g00843 758 MobiDBLite consensus disorder prediction 733 748 - -
Chy11g00843 758 Gene3D - 119 388 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Chy11g00843 758 MobiDBLite consensus disorder prediction 50 68 - -
Chy11g00843 758 Pfam DNA ligase N terminus 144 319 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Chy11g00843 758 Gene3D DNA ligase/mRNA capping enzyme 415 540 - -
Chy11g00843 758 ProSiteProfiles ATP-dependent DNA ligase family profile. 492 628 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Chy11g00843 758 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 410 418 IPR016059 GO:0003909
Chy11g00843 758 Gene3D - 595 757 IPR012340 -
Chy11g00843 758 Gene3D - 396 594 - -
Chy11g00843 758 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 102 758 - -
Chy11g00843 758 MobiDBLite consensus disorder prediction 71 85 - -
Chy11g00843 758 MobiDBLite consensus disorder prediction 1 85 - -
Chy11g00843 758 Pfam ATP dependent DNA ligase C terminal region 615 726 IPR012309 GO:0003910|GO:0006281|GO:0006310
Chy11g00843 758 CDD OBF_DNA_ligase_I 598 743 - -
Chy11g00843 758 ProSitePatterns ATP-dependent DNA ligase signature 2. 564 590 IPR016059 GO:0003909
Chy11g00843 758 CDD Adenylation_DNA_ligase_I_Euk 375 593 - -
Chy11g00843 758 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 202 741 IPR000977 GO:0003910|GO:0005524|GO:0071897
Chy11g00843 758 PANTHER DNA LIGASE 1 102 758 - -
Chy11g00843 758 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 126 377 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00843 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] - csv:101213447 1455.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00868 Chy-Chr5:12771873 Chy11g00843 Chy-Chr11:11936898 1.17E-31 dispersed
Chy07g00738 Chy-Chr7:7601140 Chy11g00843 Chy-Chr11:11936898 1.21E-163 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g1100 . . . Bda09g01436 . . . . . . . . . . . . . . . . . . . . Cla02g02101 Cam02g2230 Cec02g2268 Cco02g2308 Clacu02g2212 Cmu02g2147 Cre02g2464 . . . . . Csa06g01233 Chy11g00843 . Blo08g00019 . . . Bpe08g00178 . Bma07g00168 . Sed05g2803 . Cmo20g00553 . Cma20g00522 . Car20g00461 Cpe16g00505 . Bhi10g00144 Tan05g0202 Cmetu11g1276 . Hepe08g0926 . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g00760 . 107 798 Core DNA Replication Machinery Family AT4G14700 66.0 1.6e-267 919.1
Chy02g00078 . 1 376 Core DNA Replication Machinery Family AT4G14700 69.2 8.0e-155 544.7
Chy02g00080 . 83 223 Core DNA Replication Machinery Family AT4G14700 64.4 3.8e-48 190.3
Chy04g00760 . 107 798 Core DNA Replication Machinery Family AT4G12620 67.9 7.0e-276 946.8
Chy02g00078 . 1 376 Core DNA Replication Machinery Family AT4G12620 69.5 2.3e-154 543.1
Chy02g00080 . 83 223 Core DNA Replication Machinery Family AT4G12620 66.7 9.8e-52 202.2
Chy03g01522 . 2 360 Core DNA Replication Machinery Family AT2G37560 65.5 1.1e-140 496.5
Chy10g00355 . 9 413 Core DNA Replication Machinery Family AT2G01120 64.6 1.8e-153 539.3
Chy11g01648 . 3 524 Core DNA Replication Machinery Family AT4G29910 58.2 8.9e-169 590.5
Chy05g00660 . 1 254 Core DNA Replication Machinery Family AT1G26840 66.5 2.4e-90 328.9
Chy01g00870 . 34 829 Core DNA Replication Machinery Family AT1G79150 57.8 2.5e-244 842.0
Chy04g01347 . 10 939 Core DNA Replication Machinery Family AT1G44900 75.5 0.0e+00 1347.0
Chy02g00156 . 1 575 Core DNA Replication Machinery Family AT5G46280 80.7 1.1e-267 919.1
Chy01g00756 . 1 821 Core DNA Replication Machinery Family AT2G16440 76.8 0.0e+00 1120.9
Chy05g01255 . 1 717 Core DNA Replication Machinery Family AT2G07690 77.8 0.0e+00 1078.2
Chy02g00002 . 7 840 Core DNA Replication Machinery Family AT5G44635 72.0 0.0e+00 1190.3
Chy01g01752 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.1 0.0e+00 1218.4
Chy11g01344 . 38 500 Core DNA Replication Machinery Family AT2G29680 60.9 1.2e-159 560.1
Chy11g01344 . 22 465 Core DNA Replication Machinery Family AT1G07270 58.2 1.5e-140 496.5
Chy01g01391 . 1 594 Core DNA Replication Machinery Family AT3G25100 76.4 4.1e-257 884.0
Chy04g02091 . 12 783 Core DNA Replication Machinery Family AT3G09660 72.6 0.0e+00 1085.5
Chy01g00231 . 10 642 Core DNA Replication Machinery Family AT2G14050 77.8 2.7e-286 981.1
Chy11g00257 . 18 420 Core DNA Replication Machinery Family AT2G20980 55.8 8.0e-116 414.1
Chy06g01182 . 7 192 Core DNA Replication Machinery Family AT1G77320 66.7 3.6e-72 270.4
Chy01g02007 . 1 196 Core DNA Replication Machinery Family AT1G80190 66.5 3.6e-72 268.1
Chy07g00809 . 743 887 Core DNA Replication Machinery Family AT3G12530 71.7 1.8e-60 228.8
Chy03g00186 . 22 191 Core DNA Replication Machinery Family AT1G19080 67.6 1.1e-62 236.5
Chy03g00186 . 22 191 Core DNA Replication Machinery Family AT3G55490 67.6 1.1e-62 236.5
Chy06g00159 . 2 164 Core DNA Replication Machinery Family AT5G49010 61.3 3.1e-49 191.8
Chy11g00218 . 1 1546 Core DNA Replication Machinery Family AT5G67100 60.0 0.0e+00 1748.0
Chy12g01485 . 81 704 Core DNA Replication Machinery Family AT1G67630 61.7 4.3e-217 751.1
Chy11g01796 . 8 447 Core DNA Replication Machinery Family AT1G67320 64.9 1.9e-183 639.0
Chy09g00091 . 7 469 Core DNA Replication Machinery Family AT5G41880 61.1 1.5e-166 582.8
Chy08g00986 . 1 1000 Core DNA Replication Machinery Family AT5G63960 80.7 0.0e+00 1652.1
Chy04g01776 . 41 282 Core DNA Replication Machinery Family AT2G42120 78.9 1.6e-117 419.9
Chy11g01796 . 8 447 Core DNA Replication Machinery Family AT1G67320 64.9 1.9e-183 639.0
Chy11g00894 . 1 2096 Core DNA Replication Machinery Family AT1G08260 71.3 0.0e+00 2984.5
Chy11g00894 . 25 2203 Core DNA Replication Machinery Family AT2G27120 67.8 0.0e+00 2949.5
Chy12g01602 . 1 258 Core DNA Replication Machinery Family AT5G22110 76.4 9.7e-119 424.1
Chy05g00194 . 1 921 Core DNA Replication Machinery Family AT5G22010 63.5 1.3e-307 1052.4
Chy06g01971 . 1 332 Core DNA Replication Machinery Family AT1G63160 90.7 6.0e-173 603.6
Chy08g00054 . 1 355 Core DNA Replication Machinery Family AT5G27740 84.8 8.6e-178 619.8
Chy07g00561 . 1 334 Core DNA Replication Machinery Family AT1G21690 81.8 2.4e-153 538.5
Chy03g00774 . 6 220 Core DNA Replication Machinery Family AT1G77470 76.2 1.8e-93 339.7
Chy03g00775 . 1 216 Core DNA Replication Machinery Family AT1G77470 78.3 3.5e-89 325.5
Chy05g01462 . 26 618 Core DNA Replication Machinery Family AT2G06510 67.7 6.6e-250 860.1
Chy06g02198 . 28 701 Core DNA Replication Machinery Family AT2G06510 51.3 1.6e-200 696.0
Chy02g02440 . 1 623 Core DNA Replication Machinery Family AT5G08020 67.6 3.7e-245 844.3
Chy06g02198 . 6 810 Core DNA Replication Machinery Family AT5G45400 53.1 9.1e-234 807.0
Chy02g02440 . 1 618 Core DNA Replication Machinery Family AT5G61000 65.9 6.3e-240 827.0
Chy06g02198 . 1 796 Core DNA Replication Machinery Family AT4G19130 54.2 5.6e-230 794.3
Chy08g01078 . 1 373 Core DNA Replication Machinery Family AT5G26680 85.6 1.4e-182 636.0
Chy06g00300 . 1 1095 Core DNA Replication Machinery Family AT1G08840 52.9 2.9e-298 1021.5
Chy11g00843 . 2 759 Core DNA Replication Machinery Family AT1G08130 69.2 5.4e-297 1016.9
Chy11g00843 . 158 759 Core DNA Replication Machinery Family AT1G49250 69.3 4.9e-243 837.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009502 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g00843 Chy_Chr11 FPKM 15.991294 16.72743 16.10825 14.427116 25.05224 22.748138 24.92837 14.691855 15.962112 15.995067