Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00843 ATGTCTTCTCGTCCTTCCGCCTTCGATGCTCTCATGTCTGGTGCTCGTGCCGCTGCCAAGAAGAAGCCTGCTAATTCTTCTCCCAAGAAGCGTAAAGCCCTTGATTCTTTAGATCCTCCTCTGAAACCTAGCTCTTTCCTCGCTCTTGAGTCAACGCCGCCTGTTGAATCGCAGTGCGGCAGTTCAGTTTCAAATTTGGACGATCATGGAGGTACTCATTTGGATGGTGTCGATTTGGGAGAAACCAAGTTGCGTCAGGATAATGATGGCGGTATTGGAGCCAAGATTGGGCCGTTTGGTAACAAGACTTGTGCGTCTAGTGTTCAAGAAAGAACAGCGAAATTGAAGAGCTCTACTGCAGAGTTGAAAAAGAAGGCTAAGGATTTCAACTCGAAGAATGTCGCATGTTGGAAAGAGGGTGAACGTGTTCCTTTTTTGTTTCTATGTTTGGGGTTCGATATGATTTCGGAGGAGTCCAGTAGGATTACTATCACTGATATAGTCTGCAACATGCTGAGGACCGTCATGGATACTACACCCGACGACTTGGTAGCCACTGTGTATCTTTTGGCGAATAAGATTGCTCCAGCTCATGAAGGGCTTGAGTTGGGGATTGGGGATGCTTCTATTATCAAAGCTCTTTCTGAGGCATTTGGGAGGACAGAGGCACAGGTCAAAAAGCAGTACAAGGAATTGGGAGATTTGGGTCTTGTTGCTAAAGCTAGCCGTTCATCTCAATCTATGATGCGAAAGCCCGATGCTTTAACTGTTACCAAAGTATTTGACACATTTCGACTGATTGCTAAGGAATCTGGCAAGGATAGTCAGGAGAAGAAAAAGAATCATATCAAGTCACTGCTTGTTGCTGCCACTGACTGTGAACCTTTATATCTGATTAGATTGCTGCAGACAAAATTGCGAATTGGACTTGCTGAGCAGACTCTTTTAGCTGCATTAGGACAAGCAGCTGTATATTCTGAAAAGCACTCAACACCACCTCCGAATATTCAATCCCCTCTAGAAGAGGCTTCTAAGATTGTAAAGCAGGTGTATTCTATACTTCCAGTTTATGACAAACTTGTTCCTGCTCTTCTTAGTGGTGGTGTGTGGAATCTTTCAAAAACATGCAACTTTACACCGGGAATTCCAATTGGACCCATGCTGGCAAAACCAACAAAAGGAGTGTCTGAGATCTTAAATAAATTCCAGGGTTTGGAATTTACTTGTGAATACAAATATGATGGGGAACGTGCCCAGATACATTACATGGAAGATGGTTCAGTTGAGATATATAGTCGAAATGCTGAACGGAACACAGGAAAGTTCCCTGATGTTGTTCTCACAGTATCAAGGATAAAGAAACCATCTGTAAGATCATTTATTTTGGATTGTGAACTTGTTGCTTATGATCGTGGAAAACAAAAGATTCTACCCTTTCAGATTCTGAGTACTCGAGCTCGTAAGAATGTGGCCGTGAGTGATATTAAGGTTGAAGTGTGTGTATTTGCTTTTGATTTACTCTATCTTGATGGTCAACCTCTTATCCAGAGAGAACTTAATGTTCGTCGAGAGCTTCTCTACAATTCATTTATTGAAGAATCTGGATATTTTCAATTTGCCACAGCAATAATAACAAATGATCTTGAGGAAATACAAAAGTTCCTTGATGCATCAGTTGATCAAAGCTGTGAGGGTTTAATCATCAAAACACTGAACCGGGATGCCACTTATGAGCCTTCCAAGAGGTCTCATAACTGGCTAAAACTGAAGAAGGATTACATAGACAGCATAGGGGATTCACTTGATCTGGTACCGATTGCTGCCTTCCATGGCCGTGGGAAACGTACAGGTGTCTATGGTGCATTTCTCCTTGCCTGCTATGATAATGACAATGAAGAATTTCAAAGTATTTGTAAGATAGGAACTGGGTTTTCTGAAGCAATGCTTGAGGAACGTTCTGCTAGTCTCCGTTCTAAAGTCATCCCTGAACCAAAGTCATATTATCGGTATGGAGATACAATCAATCCAGATGTTTGGTTTGAGCCAACTGAGGTTTGGGAGGTTAAAGCTGCAGACTTGACTATTAGCCCAGTTCATCGTGCAGGAGTCGGCATTGTGGACTCTGACAAGGGAATTTCTCTCCGATTTCCACGTCTTGTTCGTGTGAGGAAAGACAAAAATCCAGAGGAAGCCTCATCATCAGAGCAGGTTGCCGACATGTATAATGCTCAGAAACACAACCACCAGAACAATCAAGATGACAATGAAGACGACTAA 2277 42.6 MSSRPSAFDALMSGARAAAKKKPANSSPKKRKALDSLDPPLKPSSFLALESTPPVESQCGSSVSNLDDHGGTHLDGVDLGETKLRQDNDGGIGAKIGPFGNKTCASSVQERTAKLKSSTAELKKKAKDFNSKNVACWKEGERVPFLFLCLGFDMISEESSRITITDIVCNMLRTVMDTTPDDLVATVYLLANKIAPAHEGLELGIGDASIIKALSEAFGRTEAQVKKQYKELGDLGLVAKASRSSQSMMRKPDALTVTKVFDTFRLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQTKLRIGLAEQTLLAALGQAAVYSEKHSTPPPNIQSPLEEASKIVKQVYSILPVYDKLVPALLSGGVWNLSKTCNFTPGIPIGPMLAKPTKGVSEILNKFQGLEFTCEYKYDGERAQIHYMEDGSVEIYSRNAERNTGKFPDVVLTVSRIKKPSVRSFILDCELVAYDRGKQKILPFQILSTRARKNVAVSDIKVEVCVFAFDLLYLDGQPLIQRELNVRRELLYNSFIEESGYFQFATAIITNDLEEIQKFLDASVDQSCEGLIIKTLNRDATYEPSKRSHNWLKLKKDYIDSIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDVWFEPTEVWEVKAADLTISPVHRAGVGIVDSDKGISLRFPRLVRVRKDKNPEEASSSEQVADMYNAQKHNHQNNQDDNEDD* 759
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11936898 11943664 - Chy11G194230.1 Chy11g00843 236604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00843 758 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 378 596 - -
Chy11g00843 758 Pfam ATP dependent DNA ligase domain 386 590 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Chy11g00843 758 SUPERFAMILY Nucleic acid-binding proteins 598 744 IPR012340 -
Chy11g00843 758 MobiDBLite consensus disorder prediction 724 758 - -
Chy11g00843 758 MobiDBLite consensus disorder prediction 733 748 - -
Chy11g00843 758 Gene3D - 119 388 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Chy11g00843 758 MobiDBLite consensus disorder prediction 50 68 - -
Chy11g00843 758 Pfam DNA ligase N terminus 144 319 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Chy11g00843 758 Gene3D DNA ligase/mRNA capping enzyme 415 540 - -
Chy11g00843 758 ProSiteProfiles ATP-dependent DNA ligase family profile. 492 628 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Chy11g00843 758 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 410 418 IPR016059 GO:0003909
Chy11g00843 758 Gene3D - 595 757 IPR012340 -
Chy11g00843 758 Gene3D - 396 594 - -
Chy11g00843 758 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 102 758 - -
Chy11g00843 758 MobiDBLite consensus disorder prediction 71 85 - -
Chy11g00843 758 MobiDBLite consensus disorder prediction 1 85 - -
Chy11g00843 758 Pfam ATP dependent DNA ligase C terminal region 615 726 IPR012309 GO:0003910|GO:0006281|GO:0006310
Chy11g00843 758 CDD OBF_DNA_ligase_I 598 743 - -
Chy11g00843 758 ProSitePatterns ATP-dependent DNA ligase signature 2. 564 590 IPR016059 GO:0003909
Chy11g00843 758 CDD Adenylation_DNA_ligase_I_Euk 375 593 - -
Chy11g00843 758 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 202 741 IPR000977 GO:0003910|GO:0005524|GO:0071897
Chy11g00843 758 PANTHER DNA LIGASE 1 102 758 - -
Chy11g00843 758 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 126 377 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00868 Chy-Chr5:12771873 Chy11g00843 Chy-Chr11:11936898 1.17E-31 dispersed
Chy07g00738 Chy-Chr7:7601140 Chy11g00843 Chy-Chr11:11936898 1.21E-163 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00843 K10747 - csv:101213447 1455.27