Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00854 ATGGGTCAGATTCAGTACTCTGAGAAGTACTTCGACGACATTTATGAGTACAGGCACGTGGTTCTCCCGCCCGAAGTGGCAAAGTTGCTTCCTAAGAATCGTCTGCTCTCGGAAAATGAATGGCGTGCAATTGGAGTCCAGCAGAGTCGTGGATGGGTGCACTATGCTATTCATCGTCCCGAACCTCATATCATGCTATTCAGGAGGCCCCTGAACTACCAACAGCAGCAGGAGAATCGCACTCAACAAAATGCGCTTGCTGCTAAATGA 270 49.26 MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENRTQQNALAAK* 90
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12001845 12002809 - Chy11G194340.1 Chy11g00854 236615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00854 89 SMART CKS_2 3 72 IPR000789 GO:0016538
Chy11g00854 89 PRINTS Cyclin-dependent kinase regulatory subunit signature 3 17 IPR000789 GO:0016538
Chy11g00854 89 PRINTS Cyclin-dependent kinase regulatory subunit signature 18 32 IPR000789 GO:0016538
Chy11g00854 89 PRINTS Cyclin-dependent kinase regulatory subunit signature 40 54 IPR000789 GO:0016538
Chy11g00854 89 PRINTS Cyclin-dependent kinase regulatory subunit signature 55 69 IPR000789 GO:0016538
Chy11g00854 89 Pfam Cyclin-dependent kinase regulatory subunit 4 70 IPR000789 GO:0016538
Chy11g00854 89 ProSitePatterns Cyclin-dependent kinases regulatory subunits signature 1. 6 24 IPR000789 GO:0016538
Chy11g00854 89 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT 1 87 - -
Chy11g00854 89 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 1 87 - -
Chy11g00854 89 SUPERFAMILY Cell cycle regulatory proteins 1 83 IPR036858 GO:0016538
Chy11g00854 89 Gene3D - 1 84 IPR036858 GO:0016538
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy11g00854 Chy12g00760 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy11g00854 Chy-Chr11:12001845 Chy12g00760 Chy-Chr12:11727164 1.12E-50 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00854 K02219 - csv:105435797 175.637