Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00908 ATGGCTGAAGAACATAGATGCCAAGCGCCGAAGCTTTGTGCGAACAACTGCGGGTTCTTTGGCAGTCCCGCGACAAGAGATTTCTGTTCTAAATGTTACCGAGATCTGCAGTTGAAGGAACAACAATCCTCCACCGCTAAACTCGCCTTAAACCAAACCCTGGCGGCGTCGTTGTTGTTAAATCCGGAACCGGAAGCGAAGGAACAACGCGCGGAGGAGGAGGTGAGGACGGAAGTGGTTCGGACGGCAGCGGCGGAGGAAAGACAGCAACAGCAGCCGAGCCGATGTATGACGTGCAGGCGGCGCGTGGGGTTGACGGGGTTCAAGTGCCGGTGTGGGATGGTGTATTGTGGGAGTCATCGGTACCCGGAACAACACGGGTGTGAATTTGACTTCAAGCAGATGGGGAAGGATCAGATCGCGAAGGCGAATCCGGTGGTGAAAGGGGAGAAACTGCAGAAGATTTGA 468 54.91 MAEEHRCQAPKLCANNCGFFGSPATRDFCSKCYRDLQLKEQQSSTAKLALNQTLAASLLLNPEPEAKEQRAEEEVRTEVVRTAAAEERQQQQPSRCMTCRRRVGLTGFKCRCGMVYCGSHRYPEQHGCEFDFKQMGKDQIAKANPVVKGEKLQKI* 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12490506 12490973 - Chy11G194880.1 Chy11g00908 236669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00908 155 Gene3D - 1 55 - -
Chy11g00908 155 ProSiteProfiles Zinc finger A20-type profile. 7 41 IPR002653 GO:0003677|GO:0008270
Chy11g00908 155 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 155 - -
Chy11g00908 155 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 3 1 155 - -
Chy11g00908 155 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 51 - -
Chy11g00908 155 Pfam A20-like zinc finger 12 34 IPR002653 GO:0003677|GO:0008270
Chy11g00908 155 Pfam AN1-like Zinc finger 96 132 IPR000058 GO:0008270
Chy11g00908 155 SUPERFAMILY AN1-like Zinc finger 83 150 IPR035896 -
Chy11g00908 155 SMART AN1_Zf_4 96 133 IPR000058 GO:0008270
Chy11g00908 155 Gene3D - 68 151 IPR035896 -
Chy11g00908 155 SMART A20_3 10 34 IPR002653 GO:0003677|GO:0008270
Chy11g00908 155 ProSiteProfiles Zinc finger AN1-type profile. 90 136 IPR000058 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01445 Chy-Chr2:11531479 Chy11g00908 Chy-Chr11:12490506 1.04E-43 dispersed
Chy08g00932 Chy-Chr8:16718825 Chy11g00908 Chy-Chr11:12490506 1.01E-58 dispersed
Chy09g01148 Chy-Chr9:13743517 Chy11g00908 Chy-Chr11:12490506 1.06E-43 dispersed
Chy11g00908 Chy-Chr11:12490506 Chy01g01877 Chy-Chr1:24151199 8.97E-45 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00908 - - csv:101219115 278.87