Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00950 ATGAAATTTGAAGAGCAGAACCAGAATCATCATCAGTCCAAAGAGATATGCAGAACCATTCAAGTGGATACAGTTGATCACCATCACACTATTTCCTCTCTACTTGCAATGGAGGCTTCCGAATTCTGCGATAAGGATGGTGATGATGGCCTCTATATCCCTCCTCTCAACTTTTCCATGGTTGATAATGGCATTTTCCGCTCCGGTTTCCCTGACTCTCCTAACTTCTCCTTCCTCCAAACCCTAGCTCTCCGTTCCATTATATGTTTATGTCCGGAGCCGTATCCGGAACACAATATGGACTTCCTCAAGTCTAACGGGATTAGATTGTTTCAATTTGGAATCGAAAGCTGTAAGGAGCCTTTCGTGAACATCCCAGATGATATTATTCGTGAAGCACTGAAAGTTGTCCTTGACGATAGAAATCATCCACTTCTCATACATTGCAAAAGAGGAAAGCATCGGACAGGTTGTCTTGTGGGATGCCTGAGAAAATTGCAGAGGTGGTGCCTCACGTCTGTGTTCGATGAGTATCAGAGATTTGCAGCTGCGAAAGCAAGAATTTCCGACCAGAGGTTTATGGAGTTGTTTGATATCTCTGACTTGAAGCATCTTCCCATGTCATTCTCATGCTCAAAGAGACGAAAGCAGGTAGCTCAGTGGAAAAAGCAAGGCGACCACTCAATCGAAC 691 44.14 MKFEEQNQNHHQSKEICRTIQVDTVDHHHTISSLLAMEASEFCDKDGDDGLYIPPLNFSMVDNGIFRSGFPDSPNFSFLQTLALRSIICLCPEPYPEHNMDFLKSNGIRLFQFGIESCKEPFVNIPDDIIREALKVVLDDRNHPLLIHCKRGKHRTGCLVGCLRKLQRWCLTSVFDEYQRFAAAKARISDQRFMELFDISDLKHLPMSFSCSKRRKQVAQWKKQGDHSIEX 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13243491 13246921 - Chy11G195300.1 Chy11g00950 236711

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00950 231 CDD PFA-DSP_Siw14 51 198 - -
Chy11g00950 231 Pfam Tyrosine phosphatase family 52 203 IPR004861 -
Chy11g00950 231 ProSitePatterns Tyrosine specific protein phosphatases active site. 147 157 IPR016130 GO:0016311|GO:0016791
Chy11g00950 231 PRINTS Plant and fungal dual specificity phosphatase signature 52 69 IPR020428 GO:0016791
Chy11g00950 231 PRINTS Plant and fungal dual specificity phosphatase signature 89 102 IPR020428 GO:0016791
Chy11g00950 231 PRINTS Plant and fungal dual specificity phosphatase signature 108 122 IPR020428 GO:0016791
Chy11g00950 231 PRINTS Plant and fungal dual specificity phosphatase signature 125 139 IPR020428 GO:0016791
Chy11g00950 231 PANTHER TYROSINE-PROTEIN PHOSPHATASE 4 212 - -
Chy11g00950 231 ProSiteProfiles Dual specificity protein phosphatase domain profile. 57 211 IPR020422 GO:0006470|GO:0008138
Chy11g00950 231 Gene3D Protein tyrosine phosphatase superfamily 52 201 IPR029021 -
Chy11g00950 231 PANTHER PHOSPHOTYROSINE PROTEIN PHOSPHATASES SUPERFAMILY PROTEIN ISOFORM 1 4 212 - -
Chy11g00950 231 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 53 199 IPR029021 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00950 K18045 SIW14, OCA3; tyrosine-protein phosphatase SIW14 [EC:3.1.3.48] - csv:101222170 442.195
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01674 Chy-Chr2:16473349 Chy11g00950 Chy-Chr11:13243491 1.16E-79 dispersed
Chy05g00519 Chy-Chr5:5629593 Chy11g00950 Chy-Chr11:13243491 2.22E-97 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g443 . . . . Bpe12g00275 Bpe15g00169 Bma03g01308 Bma08g00533 . . Cma02g00065 Cma20g00235 Car02g00052 Car20g00205 Sed05g1894 . . Bhi05g02097 Tan02g0134 Cmetu05g0487 . . . . Cla02g01771 Cam02g1872 Cec02g1896 Cco02g1936 Clacu02g1854 Cmu02g1800 . . Cone10ag1396 Cone8ag1552 . Lsi10g01569 . Chy11g00950 . Blo04g01214 Blo13g00337 . Bda15g00865 Bpe14g00621 . . . Sed01g0708 Cmo02g00063 Cmo20g00254 . . Car11g01620 . Cpe16g00749 . Bhi10g01060 Tan05g0690 Cmetu11g0212 . Hepe08g0587 . . . . . . . . . Lsi11g01669 Csa06g02393 . Cme11g01505
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy02g00892 . 33 608 Protein tyrosine phosphatase (PTP) family AT3G50110 62.4 2.6e-193 672.2
Chy01g00080 . 6 613 Protein tyrosine phosphatase (PTP) family AT3G50110 57.3 1.2e-182 636.7
Chy04g01571 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 66.2 3.3e-157 551.6
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT3G10550 68.5 0.0e+00 1177.5
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1114.0
Chy02g02115 . 51 1308 Protein tyrosine phosphatase (PTP) family AT5G58160 53.4 4.6e-306 1047.7
Chy02g02475 CCT 1 376 Protein tyrosine phosphatase (PTP) family AT5G58160 63.3 4.8e-138 489.6
Chy01g01195 . 4 277 Protein tyrosine phosphatase (PTP) family AT1G71860 67.3 2.4e-108 389.0
Chy02g02701 . 11 908 Protein tyrosine phosphatase (PTP) family AT5G23720 64.2 0.0e+00 1075.5
Chy11g01429 . 33 171 Protein tyrosine phosphatase (PTP) family AT3G06110 57.9 8.0e-41 163.7
Chy05g00525 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 76.9 6.0e-71 263.8
Chy10g01271 . 113 393 Protein tyrosine phosphatase (PTP) family AT3G52180 69.0 6.4e-115 410.6
Chy10g00338 . 29 283 Protein tyrosine phosphatase (PTP) family AT3G10940 74.0 1.9e-111 399.1
Chy04g01457 . 141 589 Protein tyrosine phosphatase (PTP) family AT3G01510 71.9 2.0e-203 705.3
Chy11g00950 . 2 214 Protein tyrosine phosphatase (PTP) family AT2G32960 57.5 5.8e-75 277.7
Chy05g00519 . 43 240 Protein tyrosine phosphatase (PTP) family AT2G32960 62.9 8.2e-69 257.3
Chy02g01674 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 52.0 1.8e-55 213.0
Chy06g02072 . 14 348 Protein tyrosine phosphatase (PTP) family AT2G35680 55.6 1.3e-101 366.7
Chy05g01416 . 18 264 Protein tyrosine phosphatase (PTP) family AT2G35680 54.9 1.6e-80 296.6
Chy05g01416 . 28 202 Protein tyrosine phosphatase (PTP) family AT5G56610 52.6 7.8e-45 177.2
Chy06g02072 . 51 226 Protein tyrosine phosphatase (PTP) family AT5G56610 51.7 1.0e-44 176.8
Chy11g00950 . 44 214 Protein tyrosine phosphatase (PTP) family AT4G03960 76.6 2.5e-78 288.5
Chy05g00519 . 41 239 Protein tyrosine phosphatase (PTP) family AT4G03960 61.3 2.2e-66 248.8
Chy02g01674 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.0 5.0e-58 221.1
Chy02g01674 . 1 201 Protein tyrosine phosphatase (PTP) family AT3G02800 68.6 8.1e-80 293.5
Chy11g00950 . 44 208 Protein tyrosine phosphatase (PTP) family AT3G02800 60.6 4.1e-55 211.5
Chy10g00579 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.1 2.2e-61 234.2
Chy04g01571 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 66.2 3.3e-157 551.6
Chy01g00080 . 33 613 Protein tyrosine phosphatase (PTP) family AT3G19420 65.8 2.4e-220 761.9
Chy02g00892 . 31 608 Protein tyrosine phosphatase (PTP) family AT3G19420 61.9 4.6e-195 677.9
Chy02g00892 . 33 608 Protein tyrosine phosphatase (PTP) family AT3G50110 62.4 2.6e-193 672.2
Chy01g00080 . 6 613 Protein tyrosine phosphatase (PTP) family AT3G50110 57.3 1.2e-182 636.7
Chy02g02115 . 51 1308 Protein tyrosine phosphatase (PTP) family AT5G58160 53.4 4.6e-306 1047.7
Chy02g02475 CCT 1 376 Protein tyrosine phosphatase (PTP) family AT5G58160 63.3 4.8e-138 489.6
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT3G10550 68.5 0.0e+00 1177.5
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1114.0
Chy11g00890 . 17 244 Protein tyrosine phosphatase (PTP) family AT3G44620 58.2 5.2e-71 264.6
Chy06g02132 . 27 311 Protein tyrosine phosphatase (PTP) family AT2G35320 64.2 2.5e-109 392.1
Chy08g00661 . 1 673 Protein tyrosine phosphatase (PTP) family AT3G09100 68.7 9.0e-277 949.5
Chy08g00661 . 5 673 Protein tyrosine phosphatase (PTP) family AT5G01290 65.5 3.4e-252 867.8
Chy08g00661 . 86 673 Protein tyrosine phosphatase (PTP) family AT5G28210 56.4 4.9e-184 641.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001007 2 3 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 4 4 1 2 2 2 2 2 2 2 7 6 2 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g00950 Chy_Chr11 FPKM 67.46476 59.047462 0.0 0.0 1.461037 0.0 0.0 0.0 0.0 0.608021