Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy11g00957 | ATGCGGCGAGGCAGACCCTCAGATCCATTTACAGCTACAGAAATACCCAATTCAACCATTCAGCCGGAAAATCCTCTCAAAGAGATTCGTTACAGAGGCGTTCGTAAGCGTCCTTGGGGTAGGTACGCTGCTGAGATCAGAGATCCTTGGAAGAAAACTAGGGTTTGGCTTGGTACCTTTGATTCCGCTGAAGAGGCTGCTCGGGCTTATGATAATGCCGCTCGAACCCTTCGGGGTGCCAAGGCCAAAACTAACTTTCCTTTACATCCATCCACGATTTCCATTCAACAACAAATTCCTTTTTACCAATCTCCGCAGGATTTGCACGATTCGAATGGTTTTGGTGCTAAGATTGAGTGTGTTCAGGCTAATAGGCCTACATCTAGCAGTTTGAGTTCTACCGTGGAATCGTTTAGTGGGCCGCGGATTTCTAACCCTTTGTCGTCCCTGTCTATGGTTCGTCGGAGGCCGGTTCAGCCAGTTTCGCCAGATGATTGTCATAGCGACTGTGATTCGTCTTCCTCGGTTGTTGATGATGATGAGGTCTGTGTTCTTGCTTCTTTCCGTAGAGCTTTGCCCTTTGATCTTAACTTACCACCTCCGATGGACGTCGTGGATTTAACCGGTGATGATCTTCAAGCTACTGCTTTATGCCTCTGA | 660 | 47.88 | MRRGRPSDPFTATEIPNSTIQPENPLKEIRYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDSAEEAARAYDNAARTLRGAKAKTNFPLHPSTISIQQQIPFYQSPQDLHDSNGFGAKIECVQANRPTSSSLSSTVESFSGPRISNPLSSLSMVRRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDDLQATALCL* | 220 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 13517880 | 13518539 | + | Chy11G195370.1 | Chy11g00957 | 236718 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy11g00957 | 219 | Coils | Coil | 63 | 83 | - | - | |
Chy11g00957 | 219 | CDD | AP2 | 30 | 87 | IPR001471 | GO:0003700|GO:0006355 | |
Chy11g00957 | 219 | Gene3D | AP2/ERF domain | 29 | 89 | IPR036955 | GO:0003700|GO:0006355 | |
Chy11g00957 | 219 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 | 26 | 194 | - | - | |
Chy11g00957 | 219 | PRINTS | Ethylene responsive element binding protein signature | 31 | 42 | IPR001471 | GO:0003700|GO:0006355 | |
Chy11g00957 | 219 | PRINTS | Ethylene responsive element binding protein signature | 53 | 69 | IPR001471 | GO:0003700|GO:0006355 | |
Chy11g00957 | 219 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Chy11g00957 | 219 | PANTHER | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR | 26 | 194 | - | - | |
Chy11g00957 | 219 | ProSiteProfiles | AP2/ERF domain profile. | 30 | 87 | IPR001471 | GO:0003700|GO:0006355 | |
Chy11g00957 | 219 | SMART | rav1_2 | 30 | 93 | IPR001471 | GO:0003700|GO:0006355 | |
Chy11g00957 | 219 | Pfam | AP2 domain | 30 | 79 | IPR001471 | GO:0003700|GO:0006355 | |
Chy11g00957 | 219 | SUPERFAMILY | DNA-binding domain | 30 | 88 | IPR016177 | GO:0003677 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Chy01g00321 | Chy11g00957 | CCT | |
Chy01g00321 | Chy11g00957 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy02g00280 | Chy-Chr2:1832881 | Chy11g00957 | Chy-Chr11:13517880 | 2.96E-32 | dispersed | |
Chy05g00521 | Chy-Chr5:5656034 | Chy11g00957 | Chy-Chr11:13517880 | 2.42E-76 | dispersed | |
Chy06g01839 | Chy-Chr6:22151171 | Chy11g00957 | Chy-Chr11:13517880 | 3.10E-45 | dispersed | |
Chy07g00055 | Chy-Chr7:491426 | Chy11g00957 | Chy-Chr11:13517880 | 4.02E-31 | dispersed | |
Chy10g00855 | Chy-Chr10:14433872 | Chy11g00957 | Chy-Chr11:13517880 | 9.20E-27 | dispersed | |
Chy11g00957 | Chy-Chr11:13517880 | Chy02g01009 | Chy-Chr2:6807260 | 6.06E-26 | dispersed | |
Chy12g00915 | Chy-Chr12:14549570 | Chy11g00957 | Chy-Chr11:13517880 | 1.39E-30 | dispersed | |
Chy11g00957 | Chy-Chr11:13517880 | Chy12g00917 | Chy-Chr12:14563893 | 1.65E-33 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
18726 | PF00847 | AP2 | 4.20E-14 | CL0081 | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy11g00957 | K09286 | - | csv:101221703 | 407.527 |