Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00979 ATGGATGGCTCAGAGGGGAGTTCAATCGGTGCTCCGCCGCCATTTCTGACCAAAACATATGAAATGGTAGATGATCCGATGACTAATTCTATTGTATCGTGGAATCAAAGTGGTTTCAGCTTTGTGGTTTGGAACCCACCGGAATTTGCACAAGAATTGCTTCCAATTTATTTCAAACACAACAACTTTTCTAGTTTTGTTCGTCAATTGAACACTTATGGATTTAGGAAGATCGATCGAGAACAATGGGAATTCGCCAACGAGGGGTTTATAAGAGGAAAAACACATCTTCTAAAAAGCATTCATAGACGAAAACCAATCTACAGCCATAGCCAGAGCAGCCAAGGAAATGGAGGAGCTCCATTATCAGAACAAGAAAGACAAGAACTGGAGCAAAAAATCAAAACTCTTTATCAAGAAAAGACCAATCTCGAATCCCAGCTACAGAAACACGAAAACGAAAAAGAACAAATAGGGCATCAAATTCAAAGAATCTGTGAGAAACTATGGCGAATGGGGAATCAACAGAAGCAGCTAATTGGGATATTGGGGGCAGAGTTGGAAAAGAATGAGCACAGAAAAAAGAGGAAAATGGGGAAAGTGAATGAGTTCTTAGTTGAAAAATGGACAGAATTTGAGAAAGACAATTTGAAGAAGAAGAAGGTGAATGTTCCGCCATTGGAGCTGCTGGGGAAGCTGGAATTATCATTGGGATTGTGTGAGGATTTGCTGAGTAATGTAGCTCAAGTTTTGAAGGAAGGGAAGGAAATGGAAGTGAAAAAGGAAGGAGAAATGAGAAGTGGAGTAAATGATGTGTTTTGGGAACATTTCTTGACAGAGATTCCAGGGTCCTCCAAAGTAACTGAAGTTTGTTTGGATAGAAGGAACAATGTTGTAAGGTAG 903 39.98 MDGSEGSSIGAPPPFLTKTYEMVDDPMTNSIVSWNQSGFSFVVWNPPEFAQELLPIYFKHNNFSSFVRQLNTYGFRKIDREQWEFANEGFIRGKTHLLKSIHRRKPIYSHSQSSQGNGGAPLSEQERQELEQKIKTLYQEKTNLESQLQKHENEKEQIGHQIQRICEKLWRMGNQQKQLIGILGAELEKNEHRKKRKMGKVNEFLVEKWTEFEKDNLKKKKVNVPPLELLGKLELSLGLCEDLLSNVAQVLKEGKEMEVKKEGEMRSGVNDVFWEHFLTEIPGSSKVTEVCLDRRNNVVR* 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13762561 13763555 - Chy11G195590.1 Chy11g00979 236740

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00979 300 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Chy11g00979 300 SUPERFAMILY Winged helix DNA-binding domain 12 104 IPR036390 -
Chy11g00979 300 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Chy11g00979 300 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 222 IPR027725 -
Chy11g00979 300 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4D 9 222 - -
Chy11g00979 300 Gene3D - 9 105 IPR036388 -
Chy11g00979 300 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Chy11g00979 300 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Chy11g00979 300 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Chy11g00979 300 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Chy11g00979 300 Coils Coil 120 168 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00979 K09419 HSFF; heat shock transcription factor, other eukaryote - csv:101209621 560.066
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy11g00979 Chy-Chr11:13762561 Chy12g00055 Chy-Chr12:492654 1.02E-66 dispersed
Chy11g00979 Chy-Chr11:13762561 Chy02g00208 Chy-Chr2:1394306 1.80E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g111 . . Bda06g00272 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy11g00979 . . . . . . Bpe07g00543 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy01g01560 . 79 319 HSF AT4G17750 51.4 1.0e-59 228.0
Chy03g01653 . 43 243 HSF AT4G17750 52.7 1.1e-58 224.6
Chy05g00425 . 26 226 HSF AT4G17750 54.8 1.2e-57 221.1
Chy05g01447 . 58 251 HSF AT4G17750 50.7 9.9e-47 184.9
Chy12g00055 CCT,ECH 13 157 HSF AT4G17750 55.4 9.6e-42 168.3
Chy11g00979 . 12 114 HSF AT4G17750 68.9 5.3e-40 162.5
Chy03g01552 . 20 118 HSF AT4G17750 71.7 5.8e-39 159.1
Chy07g00142 . 20 118 HSF AT4G17750 69.7 2.2e-38 157.1
Chy09g01192 CCT 20 117 HSF AT4G17750 69.4 9.3e-37 151.8
Chy05g00425 . 41 226 HSF AT5G16820 56.7 1.6e-57 220.7
Chy01g01560 . 80 287 HSF AT5G16820 54.2 3.9e-56 216.1
Chy03g01653 . 44 243 HSF AT5G16820 53.6 1.5e-55 214.2
Chy05g01447 . 59 251 HSF AT5G16820 51.0 1.5e-44 177.6
Chy12g00055 CCT,ECH 9 155 HSF AT5G16820 56.7 2.9e-43 173.3
Chy11g00979 . 9 115 HSF AT5G16820 68.2 1.6e-38 157.5
Chy06g02159 . 13 514 HSF AT1G32330 53.4 1.3e-120 430.3
Chy01g01560 . 68 285 HSF AT1G32330 51.8 1.4e-58 224.2
Chy05g00425 . 27 226 HSF AT1G32330 53.6 7.1e-58 221.9
Chy03g01653 . 32 224 HSF AT1G32330 54.6 5.6e-55 212.2
Chy12g00055 CCT,ECH 13 157 HSF AT1G32330 55.9 1.9e-42 170.6
Chy11g00979 . 8 118 HSF AT1G32330 66.1 3.9e-40 162.9
Chy03g01552 . 20 117 HSF AT1G32330 71.4 3.7e-38 156.4
Chy07g00142 . 22 117 HSF AT1G32330 71.9 1.1e-37 154.8
Chy01g01560 . 80 297 HSF AT3G02990 53.2 1.1e-58 224.6
Chy05g00425 . 41 226 HSF AT3G02990 55.8 2.0e-57 220.3
Chy03g01653 . 44 243 HSF AT3G02990 52.2 1.3e-56 217.6
Chy12g00055 CCT,ECH 9 157 HSF AT3G02990 53.0 7.7e-41 165.2
Chy11g00979 . 13 106 HSF AT3G02990 72.3 3.6e-38 156.4
Chy01g01560 . 68 284 HSF AT2G26150 56.0 8.7e-66 247.7
Chy06g02159 . 29 243 HSF AT2G26150 58.8 6.4e-61 231.5
Chy05g01447 . 48 247 HSF AT2G26150 52.5 3.2e-52 202.6
Chy12g00055 CCT,ECH 5 155 HSF AT2G26150 53.3 3.3e-41 166.0
Chy11g00979 . 5 118 HSF AT2G26150 60.5 6.5e-37 151.8
Chy04g01969 . 116 361 HSF AT5G03720 56.8 6.3e-71 265.0
Chy11g00979 . 2 140 HSF AT4G18880 59.7 7.5e-45 178.3
Chy06g00340 . 1 436 HSF AT4G13980 51.0 2.4e-103 372.9
Chy11g00979 . 4 140 HSF AT4G13980 58.4 2.5e-39 160.2
Chy01g01560 . 39 404 HSF AT3G22830 51.2 6.1e-95 344.7
Chy03g01653 . 32 241 HSF AT3G22830 55.2 5.6e-64 241.9
Chy06g02159 . 29 242 HSF AT3G22830 59.3 3.6e-63 239.2
Chy12g00055 CCT,ECH 13 157 HSF AT3G22830 52.7 9.0e-38 154.8
Chy01g01560 . 67 379 HSF AT3G51910 50.6 2.1e-70 262.7
Chy05g00425 . 26 323 HSF AT3G51910 52.7 1.3e-69 260.0
Chy03g01653 . 32 224 HSF AT3G51910 57.0 1.4e-55 213.4
Chy03g01653 . 32 231 HSF AT3G63350 53.2 9.9e-52 200.7
Chy11g00979 . 5 140 HSF AT3G63350 57.2 1.1e-37 154.1
Chy06g00930 CCT 17 190 HSF AT4G36990 50.9 6.1e-41 164.9
Chy09g01192 CCT 16 330 HSF AT4G11660 50.7 4.4e-79 292.0
Chy07g00142 . 16 119 HSF AT4G11660 74.0 1.2e-44 177.6
Chy03g01552 . 16 121 HSF AT4G11660 71.7 1.6e-44 177.2
Chy02g01549 . 26 119 HSF AT4G11660 71.3 1.4e-37 154.1
Chy06g02159 . 31 126 HSF AT4G11660 68.8 7.1e-37 151.8
Chy08g00462 . 37 215 HSF AT2G41690 53.1 1.4e-49 193.4
Chy04g01608 . 12 221 HSF AT2G41690 50.5 4.9e-47 184.9
Chy03g01552 . 19 374 HSF AT1G46264 52.0 1.4e-87 320.1
Chy07g00142 . 19 330 HSF AT1G46264 53.8 1.2e-83 307.0
Chy02g01549 . 18 200 HSF AT1G46264 53.3 1.1e-49 194.1
Chy06g02159 . 31 138 HSF AT1G46264 72.2 2.6e-41 166.4
Chy11g00979 . 5 105 HSF AT1G46264 68.3 2.9e-37 152.9
Chy05g00425 . 32 146 HSF AT1G46264 58.3 1.5e-36 150.6
Chy02g01878 CCT 10 292 HSF AT3G24520 51.3 3.2e-65 245.7
Chy01g01560 . 79 319 HSF AT4G17750 51.4 1.0e-59 228.0
Chy03g01653 . 43 243 HSF AT4G17750 52.7 1.1e-58 224.6
Chy05g00425 . 26 226 HSF AT4G17750 54.8 1.2e-57 221.1
Chy05g01447 . 58 251 HSF AT4G17750 50.7 9.9e-47 184.9
Chy12g00055 CCT,ECH 13 157 HSF AT4G17750 55.4 9.6e-42 168.3
Chy11g00979 . 12 114 HSF AT4G17750 68.9 5.3e-40 162.5
Chy03g01552 . 20 118 HSF AT4G17750 71.7 5.8e-39 159.1
Chy07g00142 . 20 118 HSF AT4G17750 69.7 2.2e-38 157.1
Chy09g01192 CCT 20 117 HSF AT4G17750 69.4 9.3e-37 151.8
Chy05g00425 . 41 226 HSF AT5G16820 56.7 1.6e-57 220.7
Chy01g01560 . 80 287 HSF AT5G16820 54.2 3.9e-56 216.1
Chy03g01653 . 44 243 HSF AT5G16820 53.6 1.5e-55 214.2
Chy05g01447 . 59 251 HSF AT5G16820 51.0 1.5e-44 177.6
Chy12g00055 CCT,ECH 9 155 HSF AT5G16820 56.7 2.9e-43 173.3
Chy11g00979 . 9 115 HSF AT5G16820 68.2 1.6e-38 157.5
Chy06g02159 . 13 514 HSF AT1G32330 53.4 1.3e-120 430.3
Chy01g01560 . 68 285 HSF AT1G32330 51.8 1.4e-58 224.2
Chy05g00425 . 27 226 HSF AT1G32330 53.6 7.1e-58 221.9
Chy03g01653 . 32 224 HSF AT1G32330 54.6 5.6e-55 212.2
Chy12g00055 CCT,ECH 13 157 HSF AT1G32330 55.9 1.9e-42 170.6
Chy11g00979 . 8 118 HSF AT1G32330 66.1 3.9e-40 162.9
Chy03g01552 . 20 117 HSF AT1G32330 71.4 3.7e-38 156.4
Chy07g00142 . 22 117 HSF AT1G32330 71.9 1.1e-37 154.8
Chy01g01560 . 80 297 HSF AT3G02990 53.2 1.1e-58 224.6
Chy05g00425 . 41 226 HSF AT3G02990 55.8 2.0e-57 220.3
Chy03g01653 . 44 243 HSF AT3G02990 52.2 1.3e-56 217.6
Chy12g00055 CCT,ECH 9 157 HSF AT3G02990 53.0 7.7e-41 165.2
Chy11g00979 . 13 106 HSF AT3G02990 72.3 3.6e-38 156.4
Chy01g01560 . 68 284 HSF AT2G26150 56.0 8.7e-66 247.7
Chy06g02159 . 29 243 HSF AT2G26150 58.8 6.4e-61 231.5
Chy05g01447 . 48 247 HSF AT2G26150 52.5 3.2e-52 202.6
Chy12g00055 CCT,ECH 5 155 HSF AT2G26150 53.3 3.3e-41 166.0
Chy11g00979 . 5 118 HSF AT2G26150 60.5 6.5e-37 151.8
Chy04g01969 . 116 361 HSF AT5G03720 56.8 6.3e-71 265.0
Chy11g00979 . 2 140 HSF AT4G18880 59.7 7.5e-45 178.3
Chy06g00340 . 1 436 HSF AT4G13980 51.0 2.4e-103 372.9
Chy11g00979 . 4 140 HSF AT4G13980 58.4 2.5e-39 160.2
Chy01g01560 . 39 404 HSF AT3G22830 51.2 6.1e-95 344.7
Chy03g01653 . 32 241 HSF AT3G22830 55.2 5.6e-64 241.9
Chy06g02159 . 29 242 HSF AT3G22830 59.3 3.6e-63 239.2
Chy12g00055 CCT,ECH 13 157 HSF AT3G22830 52.7 9.0e-38 154.8
Chy01g01560 . 67 379 HSF AT3G51910 50.6 2.1e-70 262.7
Chy05g00425 . 26 323 HSF AT3G51910 52.7 1.3e-69 260.0
Chy03g01653 . 32 224 HSF AT3G51910 57.0 1.4e-55 213.4
Chy03g01653 . 32 231 HSF AT3G63350 53.2 9.9e-52 200.7
Chy11g00979 . 5 140 HSF AT3G63350 57.2 1.1e-37 154.1
Chy06g00930 CCT 17 190 HSF AT4G36990 50.9 6.1e-41 164.9
Chy09g01192 CCT 16 330 HSF AT4G11660 50.7 4.4e-79 292.0
Chy07g00142 . 16 119 HSF AT4G11660 74.0 1.2e-44 177.6
Chy03g01552 . 16 121 HSF AT4G11660 71.7 1.6e-44 177.2
Chy02g01549 . 26 119 HSF AT4G11660 71.3 1.4e-37 154.1
Chy06g02159 . 31 126 HSF AT4G11660 68.8 7.1e-37 151.8
Chy08g00462 . 37 215 HSF AT2G41690 53.1 1.4e-49 193.4
Chy04g01608 . 12 221 HSF AT2G41690 50.5 4.9e-47 184.9
Chy03g01552 . 19 374 HSF AT1G46264 52.0 1.4e-87 320.1
Chy07g00142 . 19 330 HSF AT1G46264 53.8 1.2e-83 307.0
Chy02g01549 . 18 200 HSF AT1G46264 53.3 1.1e-49 194.1
Chy06g02159 . 31 138 HSF AT1G46264 72.2 2.6e-41 166.4
Chy11g00979 . 5 105 HSF AT1G46264 68.3 2.9e-37 152.9
Chy05g00425 . 32 146 HSF AT1G46264 58.3 1.5e-36 150.6
Chy02g01878 CCT 10 292 HSF AT3G24520 51.3 3.2e-65 245.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002952 2 3 1 1 0 1 1 1 1 2 1 1 1 3 2 1 1 2 1 1 2 3 2 2 2 2 3 4 3 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18727 PF00447 HSF_DNA-bind 2.10E-31 CL0123 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g00979 Chy_Chr11 FPKM 6.704806 4.63803 47.972748 47.978432 15.069292 17.790905 15.398705 10.539648 9.222077 8.410588