Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy11g00996 | ATGGGAAGAGGTAAGATTGAAATAAAAAGAATTGAAAATACTACAAATCGTCAAGTCACCTTTTGCAAGAGAAGAAATGGATTGCTTAAAAAAGCTTATGAGTTGTCTGTTCTTTGTGATGCTGAAGTTGCTCTCATCGTCTTCTCTACTCGTGGTCGTCTCTACGAATACGCAAATAATAGTGTTAGAGGAACGATTGAGAGGTACAAGAAAGCATTTGCTGATTCTTCCAATTCCGGATTATCAGTTGCCGAAGCTAATGTACAGTTTTACCAACAAGAAGCCACCAAGTTGAAGAGACAGATTAGGGAAATTCAGAACTCAAACAGGCATATCCTGGGAGAAGCACTCAGCTCATTGCCATTAAAAGAGCTCAAAAGTCTTGAGGGCAGATTGGAGAGAGGTATCAGCAAAGTGAGGGCTAAAAAGAACGAAACCTTGTTTGCAGAAATGGAATTCATGCAAAAAAGGGAAATGGAACTTCAGAGCCACAATAACTATCTGAGAGCACAG | 513 | 39.77 | MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVRGTIERYKKAFADSSNSGLSVAEANVQFYQQEATKLKRQIREIQNSNRHILGEALSSLPLKELKSLEGRLERGISKVRAKKNETLFAEMEFMQKREMELQSHNNYLRAQ | 171 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 14088961 | 14096986 | + | Chy11G195760.1 | Chy11g00996 | 236757 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy11g00996 | 171 | PANTHER | AGAMOUS-LIKE MADS-BOX PROTEIN AGL1-RELATED | 1 | 170 | - | - | |
Chy11g00996 | 171 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Chy11g00996 | 171 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Chy11g00996 | 171 | CDD | MADS_MEF2_like | 2 | 78 | IPR033896 | GO:0000977|GO:0045944 | |
Chy11g00996 | 171 | Pfam | K-box region | 87 | 170 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Chy11g00996 | 171 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Chy11g00996 | 171 | PANTHER | MADS BOX PROTEIN | 1 | 170 | - | - | |
Chy11g00996 | 171 | SUPERFAMILY | SRF-like | 2 | 73 | IPR036879 | GO:0003677|GO:0046983 | |
Chy11g00996 | 171 | ProSiteProfiles | K-box domain profile. | 88 | 171 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Chy11g00996 | 171 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Chy11g00996 | 171 | Coils | Coil | 81 | 108 | - | - | |
Chy11g00996 | 171 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Chy11g00996 | 171 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Chy11g00996 | 171 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Chy11g00996 | 171 | Gene3D | - | 14 | 76 | IPR036879 | GO:0003677|GO:0046983 | |
Chy11g00996 | 171 | Coils | Coil | 125 | 145 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy09g00018 | Chy-Chr9:204900 | Chy11g00996 | Chy-Chr11:14088961 | 2.09E-79 | dispersed | |
Chy11g00996 | Chy-Chr11:14088961 | Chy12g00045 | Chy-Chr12:397024 | 3.49E-81 | dispersed | |
Chy12g00600 | Chy-Chr12:8546380 | Chy11g00996 | Chy-Chr11:14088961 | 1.86E-23 | transposed | |
Chy11g00996 | Chy-Chr11:14088961 | Chy02g00197 | Chy-Chr2:1342093 | 1.98E-90 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
18728 | PF01486 | K-box | 6.30E-25 | No_clan | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy11g00996 | K09264 | - | csv:101217987 | 329.331 |