Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00996 ATGGGAAGAGGTAAGATTGAAATAAAAAGAATTGAAAATACTACAAATCGTCAAGTCACCTTTTGCAAGAGAAGAAATGGATTGCTTAAAAAAGCTTATGAGTTGTCTGTTCTTTGTGATGCTGAAGTTGCTCTCATCGTCTTCTCTACTCGTGGTCGTCTCTACGAATACGCAAATAATAGTGTTAGAGGAACGATTGAGAGGTACAAGAAAGCATTTGCTGATTCTTCCAATTCCGGATTATCAGTTGCCGAAGCTAATGTACAGTTTTACCAACAAGAAGCCACCAAGTTGAAGAGACAGATTAGGGAAATTCAGAACTCAAACAGGCATATCCTGGGAGAAGCACTCAGCTCATTGCCATTAAAAGAGCTCAAAAGTCTTGAGGGCAGATTGGAGAGAGGTATCAGCAAAGTGAGGGCTAAAAAGAACGAAACCTTGTTTGCAGAAATGGAATTCATGCAAAAAAGGGAAATGGAACTTCAGAGCCACAATAACTATCTGAGAGCACAG 513 39.77 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVRGTIERYKKAFADSSNSGLSVAEANVQFYQQEATKLKRQIREIQNSNRHILGEALSSLPLKELKSLEGRLERGISKVRAKKNETLFAEMEFMQKREMELQSHNNYLRAQ 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14088961 14096986 + Chy11G195760.1 Chy11g00996 236757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00996 171 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL1-RELATED 1 170 - -
Chy11g00996 171 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Chy11g00996 171 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Chy11g00996 171 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Chy11g00996 171 Pfam K-box region 87 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Chy11g00996 171 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Chy11g00996 171 PANTHER MADS BOX PROTEIN 1 170 - -
Chy11g00996 171 SUPERFAMILY SRF-like 2 73 IPR036879 GO:0003677|GO:0046983
Chy11g00996 171 ProSiteProfiles K-box domain profile. 88 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Chy11g00996 171 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Chy11g00996 171 Coils Coil 81 108 - -
Chy11g00996 171 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Chy11g00996 171 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Chy11g00996 171 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Chy11g00996 171 Gene3D - 14 76 IPR036879 GO:0003677|GO:0046983
Chy11g00996 171 Coils Coil 125 145 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00018 Chy-Chr9:204900 Chy11g00996 Chy-Chr11:14088961 2.09E-79 dispersed
Chy11g00996 Chy-Chr11:14088961 Chy12g00045 Chy-Chr12:397024 3.49E-81 dispersed
Chy12g00600 Chy-Chr12:8546380 Chy11g00996 Chy-Chr11:14088961 1.86E-23 transposed
Chy11g00996 Chy-Chr11:14088961 Chy02g00197 Chy-Chr2:1342093 1.98E-90 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18728 PF01486 K-box 6.30E-25 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00996 K09264 - csv:101217987 329.331