Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00996 ATGGGAAGAGGTAAGATTGAAATAAAAAGAATTGAAAATACTACAAATCGTCAAGTCACCTTTTGCAAGAGAAGAAATGGATTGCTTAAAAAAGCTTATGAGTTGTCTGTTCTTTGTGATGCTGAAGTTGCTCTCATCGTCTTCTCTACTCGTGGTCGTCTCTACGAATACGCAAATAATAGTGTTAGAGGAACGATTGAGAGGTACAAGAAAGCATTTGCTGATTCTTCCAATTCCGGATTATCAGTTGCCGAAGCTAATGTACAGTTTTACCAACAAGAAGCCACCAAGTTGAAGAGACAGATTAGGGAAATTCAGAACTCAAACAGGCATATCCTGGGAGAAGCACTCAGCTCATTGCCATTAAAAGAGCTCAAAAGTCTTGAGGGCAGATTGGAGAGAGGTATCAGCAAAGTGAGGGCTAAAAAGAACGAAACCTTGTTTGCAGAAATGGAATTCATGCAAAAAAGGGAAATGGAACTTCAGAGCCACAATAACTATCTGAGAGCACAG 513 39.77 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVRGTIERYKKAFADSSNSGLSVAEANVQFYQQEATKLKRQIREIQNSNRHILGEALSSLPLKELKSLEGRLERGISKVRAKKNETLFAEMEFMQKREMELQSHNNYLRAQ 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14088961 14096986 + Chy11G195760.1 Chy11g00996 236757

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00996 171 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL1-RELATED 1 170 - -
Chy11g00996 171 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Chy11g00996 171 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Chy11g00996 171 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Chy11g00996 171 Pfam K-box region 87 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Chy11g00996 171 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Chy11g00996 171 PANTHER MADS BOX PROTEIN 1 170 - -
Chy11g00996 171 SUPERFAMILY SRF-like 2 73 IPR036879 GO:0003677|GO:0046983
Chy11g00996 171 ProSiteProfiles K-box domain profile. 88 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Chy11g00996 171 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Chy11g00996 171 Coils Coil 81 108 - -
Chy11g00996 171 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Chy11g00996 171 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Chy11g00996 171 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Chy11g00996 171 Gene3D - 14 76 IPR036879 GO:0003677|GO:0046983
Chy11g00996 171 Coils Coil 125 145 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00996 K09264 K09264; MADS-box transcription factor, plant - csv:101217987 329.331
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00018 Chy-Chr9:204900 Chy11g00996 Chy-Chr11:14088961 2.09E-79 dispersed
Chy11g00996 Chy-Chr11:14088961 Chy12g00045 Chy-Chr12:397024 3.49E-81 dispersed
Chy12g00600 Chy-Chr12:8546380 Chy11g00996 Chy-Chr11:14088961 1.86E-23 transposed
Chy11g00996 Chy-Chr11:14088961 Chy02g00197 Chy-Chr2:1342093 1.98E-90 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy02g00197 CCT 40 263 MADS-box Gene Family AT3G58780 65.0 2.9e-74 275.4
Chy09g00018 . 1 224 MADS-box Gene Family AT3G58780 61.5 3.2e-73 271.9
Chy11g00996 . 1 171 MADS-box Gene Family AT3G58780 80.7 2.3e-71 265.8
Chy12g00045 CCT 20 179 MADS-box Gene Family AT3G58780 75.6 8.6e-63 237.3
Chy12g01479 . 1 259 MADS-box Gene Family AT1G26310 53.8 5.4e-65 244.6
Chy07g00765 . 1 187 MADS-box Gene Family AT1G26310 64.6 5.3e-60 228.0
Chy12g01480 . 82 255 MADS-box Gene Family AT1G26310 54.7 1.9e-41 166.4
Chy09g00018 . 1 225 MADS-box Gene Family AT4G09960 74.9 1.7e-86 315.8
Chy02g00197 CCT 42 217 MADS-box Gene Family AT4G09960 73.3 1.7e-65 246.1
Chy11g00996 . 1 171 MADS-box Gene Family AT4G09960 70.2 1.3e-60 229.9
Chy12g00045 CCT 25 179 MADS-box Gene Family AT4G09960 74.8 6.4e-57 217.6
Chy09g00023 . 1 204 MADS-box Gene Family AT1G71692 57.1 8.5e-56 213.8
Chy11g01793 . 1 170 MADS-box Gene Family AT3G61120 55.8 1.8e-41 166.4
Chy09g01173 . 1 199 MADS-box Gene Family AT4G11880 56.9 3.9e-51 198.4
Chy09g00944 CCT,ECH 1 214 MADS-box Gene Family AT4G11880 53.5 2.1e-44 176.0
Chy11g01998 . 1 174 MADS-box Gene Family AT4G11880 57.7 1.5e-42 169.9
Chy04g01233 . 1 244 MADS-box Gene Family AT5G13790 51.8 1.1e-52 203.8
Chy02g00774 . 1 160 MADS-box Gene Family AT2G22630 66.3 2.1e-52 202.6
Chy08g00183 . 18 191 MADS-box Gene Family AT3G57390 52.8 3.4e-42 168.7
Chy09g01173 . 1 199 MADS-box Gene Family AT4G22950 57.9 8.3e-54 207.2
Chy11g01998 . 1 174 MADS-box Gene Family AT4G22950 59.1 6.3e-46 181.0
Chy09g00944 CCT,ECH 1 214 MADS-box Gene Family AT4G22950 51.4 2.9e-43 172.2
Chy09g00018 . 1 164 MADS-box Gene Family AT4G22950 51.8 2.4e-37 152.5
Chy11g01793 . 1 218 MADS-box Gene Family AT5G15800 67.4 1.6e-72 269.6
Chy12g01480 . 82 338 MADS-box Gene Family AT5G15800 53.0 1.6e-64 243.0
Chy07g00765 . 1 175 MADS-box Gene Family AT5G15800 55.4 4.6e-43 171.8
Chy06g00896 . 1 170 MADS-box Gene Family AT5G15800 54.3 1.1e-39 160.6
Chy11g01998 . 1 162 MADS-box Gene Family AT2G45660 69.1 3.3e-52 201.4
Chy09g00944 CCT,ECH 1 158 MADS-box Gene Family AT2G45660 65.2 7.8e-46 180.3
Chy09g01173 . 1 151 MADS-box Gene Family AT2G45660 62.9 3.9e-45 177.9
Chy06g00898 CCT,ECH 1 153 MADS-box Gene Family AT2G45660 57.5 4.1e-39 157.9
Chy02g00774 . 1 155 MADS-box Gene Family AT4G37940 67.7 6.8e-53 204.1
Chy02g00756 . 1 223 MADS-box Gene Family AT2G22540 63.7 2.9e-68 255.4
Chy03g01305 . 1 227 MADS-box Gene Family AT2G22540 52.9 3.7e-55 211.8
Chy02g00756 . 1 223 MADS-box Gene Family AT4G24540 57.6 2.5e-58 222.2
Chy03g01305 . 1 227 MADS-box Gene Family AT4G24540 54.6 3.0e-56 215.3
Chy11g01793 . 1 176 MADS-box Gene Family AT2G03710 63.8 2.4e-54 208.8
Chy12g01480 . 82 253 MADS-box Gene Family AT2G03710 61.8 4.3e-51 198.0
Chy07g00765 . 1 173 MADS-box Gene Family AT2G03710 52.6 1.7e-39 159.5
Chy11g01793 . 1 172 MADS-box Gene Family AT3G02310 77.9 1.2e-67 253.1
Chy12g01480 . 82 266 MADS-box Gene Family AT3G02310 63.2 2.5e-57 218.8
Chy07g00765 . 1 181 MADS-box Gene Family AT3G02310 54.1 5.1e-42 167.9
Chy06g00896 . 1 168 MADS-box Gene Family AT3G02310 54.4 4.0e-39 158.3
Chy09g00944 CCT,ECH 1 145 MADS-box Gene Family AT5G62165 68.3 9.5e-49 189.9
Chy06g00898 CCT,ECH 1 145 MADS-box Gene Family AT5G62165 58.6 8.7e-42 166.8
Chy11g01998 . 1 154 MADS-box Gene Family AT5G62165 56.5 1.9e-41 165.6
Chy09g01173 . 1 139 MADS-box Gene Family AT5G62165 58.5 7.6e-38 153.7
Chy02g00774 . 1 142 MADS-box Gene Family AT2G14210 69.2 4.7e-47 184.9
Chy09g00018 . 1 224 MADS-box Gene Family AT2G42830 60.3 3.2e-70 261.9
Chy02g00197 CCT 40 263 MADS-box Gene Family AT2G42830 63.3 1.3e-68 256.5
Chy11g00996 . 1 171 MADS-box Gene Family AT2G42830 76.3 1.6e-66 249.6
Chy12g00045 CCT 20 180 MADS-box Gene Family AT2G42830 75.8 1.7e-63 239.6
Chy11g01793 . 1 220 MADS-box Gene Family AT2G45650 53.1 1.9e-49 193.0
Chy06g00896 . 1 172 MADS-box Gene Family AT2G45650 56.9 6.6e-47 184.5
Chy09g00018 . 1 164 MADS-box Gene Family AT2G45650 53.0 4.6e-40 161.8
Chy07g00765 . 1 169 MADS-box Gene Family AT2G45650 52.1 6.6e-39 157.9
Chy12g00045 CCT 25 179 MADS-box Gene Family AT2G45650 51.6 1.1e-36 150.6
Chy02g00161 . 49 165 MADS-box Gene Family AT1G29960 56.4 1.6e-38 155.6
Chy12g01479 . 76 233 MADS-box Gene Family AT1G69120 55.0 3.0e-39 158.7
Chy09g00944 CCT,ECH 1 144 MADS-box Gene Family AT5G51870 56.7 2.3e-39 159.1
Chy06g00898 CCT,ECH 1 139 MADS-box Gene Family AT5G51870 54.0 6.3e-37 151.0
Chy11g01998 . 1 171 MADS-box Gene Family AT5G51860 50.3 1.3e-37 153.3
Chy07g00765 . 1 241 MADS-box Gene Family AT3G30260 50.6 4.4e-51 198.4
Chy12g01479 . 76 255 MADS-box Gene Family AT5G60910 53.9 2.7e-42 168.7
Chy11g01793 . 1 220 MADS-box Gene Family AT1G24260 75.6 1.6e-82 302.8
Chy07g00765 . 1 161 MADS-box Gene Family AT1G24260 54.6 9.6e-40 160.6
Chy12g01479 . 1 170 MADS-box Gene Family AT1G24260 50.8 1.2e-37 153.7
Chy06g00896 . 1 157 MADS-box Gene Family AT1G24260 53.0 4.5e-37 151.8
Chy04g00443 . 1 245 MADS-box Gene Family AT3G54340 59.6 6.0e-71 264.2
Chy04g00443 . 1 245 MADS-box Gene Family AT3G54340 59.6 6.0e-71 264.2
Chy02g00197 CCT 40 263 MADS-box Gene Family AT3G58780 65.0 2.9e-74 275.4
Chy09g00018 . 1 224 MADS-box Gene Family AT3G58780 61.5 3.2e-73 271.9
Chy11g00996 . 1 171 MADS-box Gene Family AT3G58780 80.7 2.3e-71 265.8
Chy12g00045 CCT 20 179 MADS-box Gene Family AT3G58780 75.6 8.6e-63 237.3
Chy11g01793 . 1 218 MADS-box Gene Family AT5G15800 67.4 1.6e-72 269.6
Chy12g01480 . 82 338 MADS-box Gene Family AT5G15800 53.0 1.6e-64 243.0
Chy07g00765 . 1 175 MADS-box Gene Family AT5G15800 55.4 4.6e-43 171.8
Chy06g00896 . 1 170 MADS-box Gene Family AT5G15800 54.3 1.1e-39 160.6
Chy11g01793 . 1 176 MADS-box Gene Family AT2G03710 63.8 2.4e-54 208.8
Chy12g01480 . 82 253 MADS-box Gene Family AT2G03710 61.8 4.3e-51 198.0
Chy07g00765 . 1 173 MADS-box Gene Family AT2G03710 52.6 1.7e-39 159.5
Chy11g01793 . 1 172 MADS-box Gene Family AT3G02310 77.9 1.2e-67 253.1
Chy12g01480 . 82 266 MADS-box Gene Family AT3G02310 63.2 2.5e-57 218.8
Chy07g00765 . 1 181 MADS-box Gene Family AT3G02310 54.1 5.1e-42 167.9
Chy06g00896 . 1 168 MADS-box Gene Family AT3G02310 54.4 4.0e-39 158.3
Chy09g00018 . 1 224 MADS-box Gene Family AT2G42830 60.3 3.2e-70 261.9
Chy02g00197 CCT 40 263 MADS-box Gene Family AT2G42830 63.3 1.3e-68 256.5
Chy11g00996 . 1 171 MADS-box Gene Family AT2G42830 76.3 1.6e-66 249.6
Chy12g00045 CCT 20 180 MADS-box Gene Family AT2G42830 75.8 1.7e-63 239.6
Chy11g01793 . 1 220 MADS-box Gene Family AT2G45650 53.1 1.9e-49 193.0
Chy06g00896 . 1 172 MADS-box Gene Family AT2G45650 56.9 6.6e-47 184.5
Chy09g00018 . 1 164 MADS-box Gene Family AT2G45650 53.0 4.6e-40 161.8
Chy07g00765 . 1 169 MADS-box Gene Family AT2G45650 52.1 6.6e-39 157.9
Chy12g00045 CCT 25 179 MADS-box Gene Family AT2G45650 51.6 1.1e-36 150.6
Chy12g01479 . 76 233 MADS-box Gene Family AT1G69120 55.0 3.0e-39 158.7
Chy12g01479 . 76 255 MADS-box Gene Family AT5G60910 53.9 2.7e-42 168.7
Chy11g01793 . 1 220 MADS-box Gene Family AT1G24260 75.6 1.6e-82 302.8
Chy07g00765 . 1 161 MADS-box Gene Family AT1G24260 54.6 9.6e-40 160.6
Chy12g01479 . 1 170 MADS-box Gene Family AT1G24260 50.8 1.2e-37 153.7
Chy06g00896 . 1 157 MADS-box Gene Family AT1G24260 53.0 4.5e-37 151.8
Chy12g01479 . 1 259 MADS-box Gene Family AT1G26310 53.8 5.4e-65 244.6
Chy07g00765 . 1 187 MADS-box Gene Family AT1G26310 64.6 5.3e-60 228.0
Chy12g01480 . 82 255 MADS-box Gene Family AT1G26310 54.7 1.9e-41 166.4
Chy09g00018 . 1 225 MADS-box Gene Family AT4G09960 74.9 1.7e-86 315.8
Chy02g00197 CCT 42 217 MADS-box Gene Family AT4G09960 73.3 1.7e-65 246.1
Chy11g00996 . 1 171 MADS-box Gene Family AT4G09960 70.2 1.3e-60 229.9
Chy12g00045 CCT 25 179 MADS-box Gene Family AT4G09960 74.8 6.4e-57 217.6
Chy09g00023 . 1 204 MADS-box Gene Family AT1G71692 57.1 8.5e-56 213.8
Chy11g01793 . 1 170 MADS-box Gene Family AT3G61120 55.8 1.8e-41 166.4
Chy09g01173 . 1 199 MADS-box Gene Family AT4G11880 56.9 3.9e-51 198.4
Chy09g00944 CCT,ECH 1 214 MADS-box Gene Family AT4G11880 53.5 2.1e-44 176.0
Chy11g01998 . 1 174 MADS-box Gene Family AT4G11880 57.7 1.5e-42 169.9
Chy04g01233 . 1 244 MADS-box Gene Family AT5G13790 51.8 1.1e-52 203.8
Chy02g00774 . 1 160 MADS-box Gene Family AT2G22630 66.3 2.1e-52 202.6
Chy08g00183 . 18 191 MADS-box Gene Family AT3G57390 52.8 3.4e-42 168.7
Chy09g01173 . 1 199 MADS-box Gene Family AT4G22950 57.9 8.3e-54 207.2
Chy11g01998 . 1 174 MADS-box Gene Family AT4G22950 59.1 6.3e-46 181.0
Chy09g00944 CCT,ECH 1 214 MADS-box Gene Family AT4G22950 51.4 2.9e-43 172.2
Chy09g00018 . 1 164 MADS-box Gene Family AT4G22950 51.8 2.4e-37 152.5
Chy11g01998 . 1 162 MADS-box Gene Family AT2G45660 69.1 3.3e-52 201.4
Chy09g00944 CCT,ECH 1 158 MADS-box Gene Family AT2G45660 65.2 7.8e-46 180.3
Chy09g01173 . 1 151 MADS-box Gene Family AT2G45660 62.9 3.9e-45 177.9
Chy06g00898 CCT,ECH 1 153 MADS-box Gene Family AT2G45660 57.5 4.1e-39 157.9
Chy02g00774 . 1 155 MADS-box Gene Family AT4G37940 67.7 6.8e-53 204.1
Chy02g00756 . 1 223 MADS-box Gene Family AT2G22540 63.7 2.9e-68 255.4
Chy03g01305 . 1 227 MADS-box Gene Family AT2G22540 52.9 3.7e-55 211.8
Chy02g00756 . 1 223 MADS-box Gene Family AT4G24540 57.6 2.5e-58 222.2
Chy03g01305 . 1 227 MADS-box Gene Family AT4G24540 54.6 3.0e-56 215.3
Chy09g00944 CCT,ECH 1 145 MADS-box Gene Family AT5G62165 68.3 9.5e-49 189.9
Chy06g00898 CCT,ECH 1 145 MADS-box Gene Family AT5G62165 58.6 8.7e-42 166.8
Chy11g01998 . 1 154 MADS-box Gene Family AT5G62165 56.5 1.9e-41 165.6
Chy09g01173 . 1 139 MADS-box Gene Family AT5G62165 58.5 7.6e-38 153.7
Chy02g00774 . 1 142 MADS-box Gene Family AT2G14210 69.2 4.7e-47 184.9
Chy02g00161 . 49 165 MADS-box Gene Family AT1G29960 56.4 1.6e-38 155.6
Chy09g00944 CCT,ECH 1 144 MADS-box Gene Family AT5G51870 56.7 2.3e-39 159.1
Chy06g00898 CCT,ECH 1 139 MADS-box Gene Family AT5G51870 54.0 6.3e-37 151.0
Chy11g01998 . 1 171 MADS-box Gene Family AT5G51860 50.3 1.3e-37 153.3
Chy07g00765 . 1 241 MADS-box Gene Family AT3G30260 50.6 4.4e-51 198.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000220 5 8 4 7 6 6 7 6 5 4 5 5 5 4 4 4 7 9 6 6 5 4 5 5 6 7 5 6 9 3 168
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18728 PF01486 K-box 6.30E-25 No_clan Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g00996 Chy_Chr11 FPKM 40.599998 45.968761 42.147312 37.8041 43.53574 46.66013 46.885368 46.019947 57.061741 38.128281