Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01004 ATGCAACAGAATTCAACCGAAGTGGAGTTCTTTTCTGATTATGGCGATGCCAGTAGATACAAAATTCAGGAAGTAATTGGCAAAGGAAGCTATGGGGTTGTCTGTTCTGCAATTGACACCCACACCGGTGACAAGGTTGCAATAAAGAAGATTCACAATATCTTTGAGCATATATCTGATGCGGTTAGAATTCTTCGTGAGATAAAGCTGCTTAGACTTCTTCGCCATCCTGATATTGTTGAAATTAAACACATTATGCTGCCACCTTCAAGGAGGGATTTCAAAGACATCTATGTTGTTTTTGAGCTGATGGAATCAGATCTCCACCAAGTTATTAAAGCAAATGATGATCTGACTCGAGAACATTATCAGTTTTTCCTTTACCAACTTCTTCGTGCATTAAAATATATCCATACAGCTAATGTCTACCACCGTGATTTAAAACCAAAGAATATATTAGCAAATGCAAATTGTAAACTTAAAATTTGTGATTTTGGATTGGCAAGAGTTGCGTTCAGTGACACACCAACAACAATTTTCTGGACGGATTATGTTGCTACTAGATGGTACAGAGCTCCGGAGCTATGTGGTTCATTTTTCTCCAAGTATACACCTGCAATTGATATATGGAGTATTGGTTGCATATTTGCCGAAGTATTGATGGGGAAACCACTTTTTCCTGGTAAAAACGTTGTACACCAGCTCGATTTGATGACGGATCTCCTTGGAACTCCTTCATTAGATACAATTTCCAGGGTACGTAATGACAAGGCTAGAAGATATTTAACTACTATGAGAAAAAAGCAGCCGGTGCCATTTTCTCAAAAGTTCCCAAATGCAGATCCTTTAGCACTGAGGCTACTGGAAAGACTGCTTGCTTTTGATCCAAAAGATAGACCAACTGCTGAAGAGGCACTGGCTGATCCATACTTCAAGGGGTTGGCAAAAATTGAGAGGGAACCTTCCTGCCAGCCAATCACAAAAATGGAATTTGAATTTGAGAGACGGAGGGTCACTAAAGAAGACATTCAGGAACTAATCTTCCGGGAGATATTAGAATATCATCCACAGCTACTAAAAGACTACATGAATGGGACTGAGAGAACAAATTTTTTATATCCAAGTGCTGTCGATCAATTTAGAAAGCAGTTTGCTCATCTGGAGGAAAATGGTGGTAAAAGTGCACCGGTAATTCCTCTTGACAGAAAGCATGTGTCCCTTCCAAGGTCAACAGTTGTACACTCGAACCCGGTCTATTCTAAGGACCAAGTAAACAATATACCCCTCCAAAATGGGAAGATCTCTGAAGACGCATACAGCAAAAATTCCCGAGATAGTGAAGGACGGCTAACAAATATATCGAGGACCATGCAGGCACCACAAAAAATCCCGTTTGCAGCTAAGCCTGGAAGAGTGGTAGGACCGGTTATAGCAGACGAGAATGGGAGGCTAGTGAAGGAACCATATGATCCAAGAACGTTGATCAGAGGTGCCATTCTTCCTCCTGCATATCACTACCACCAAAAACCTATTGTTGGAAATCAAGAAAGATCTGCAGCAGAAACCAAACTCGATATTTCTTTAAGGGCTGCTAAGCAAGCATCCCAGTGCGGCATGGCTTCCAAATTAGGATCAGATATAGCCATCAGTATTGACTCAAACCCTTTTTACATGACACGTGCCGGAGTGAACAAGGTCGAACTCAAGGACCAAATATCCATCAATGCAAACTTTCTGCAGGCCAAAGCCGCCCAATACGGTGGTCTTAGTGCAGCAACAGCCACCACCACATCGGTTGCTCACAGAAAGGTGGTTGCTGGTCAGTTTAACATGACAAAGATGTACTAA 1848 41.61 MQQNSTEVEFFSDYGDASRYKIQEVIGKGSYGVVCSAIDTHTGDKVAIKKIHNIFEHISDAVRILREIKLLRLLRHPDIVEIKHIMLPPSRRDFKDIYVVFELMESDLHQVIKANDDLTREHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLMGKPLFPGKNVVHQLDLMTDLLGTPSLDTISRVRNDKARRYLTTMRKKQPVPFSQKFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLAKIEREPSCQPITKMEFEFERRRVTKEDIQELIFREILEYHPQLLKDYMNGTERTNFLYPSAVDQFRKQFAHLEENGGKSAPVIPLDRKHVSLPRSTVVHSNPVYSKDQVNNIPLQNGKISEDAYSKNSRDSEGRLTNISRTMQAPQKIPFAAKPGRVVGPVIADENGRLVKEPYDPRTLIRGAILPPAYHYHQKPIVGNQERSAAETKLDISLRAAKQASQCGMASKLGSDIAISIDSNPFYMTRAGVNKVELKDQISINANFLQAKAAQYGGLSAATATTTSVAHRKVVAGQFNMTKMY* 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14174479 14178439 - Chy11G195840.1 Chy11g01004 236765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01004 615 ProSiteProfiles Protein kinase domain profile. 20 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy11g01004 615 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 6 490 - -
Chy11g01004 615 ProSitePatterns MAP kinase signature. 55 158 IPR003527 GO:0004707|GO:0005524|GO:0006468
Chy11g01004 615 SMART serkin_6 20 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy11g01004 615 Gene3D Phosphorylase Kinase; domain 1 35 357 - -
Chy11g01004 615 Pfam Protein kinase domain 20 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy11g01004 615 ProSitePatterns Protein kinases ATP-binding region signature. 26 50 IPR017441 GO:0005524
Chy11g01004 615 SUPERFAMILY Protein kinase-like (PK-like) 16 315 IPR011009 -
Chy11g01004 615 CDD STKc_TDY_MAPK 19 356 - -
Chy11g01004 615 Gene3D Transferase(Phosphotransferase) domain 1 106 334 - -
Chy11g01004 615 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 6 490 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00248 Chy-Chr5:2100735 Chy11g01004 Chy-Chr11:14174479 0 dispersed
Chy07g01000 Chy-Chr7:14709450 Chy11g01004 Chy-Chr11:14174479 0 dispersed
Chy11g01004 Chy-Chr11:14174479 Chy11g01438 Chy-Chr11:21183907 0 dispersed
Chy11g01004 Chy-Chr11:14174479 Chy02g02318 Chy-Chr2:27194904 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71556 PF00069 Pkinase 1.20E-66 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01004 - - csv:101216657 1192.56