Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01011 ATGGCAGCTTCATCCATGGCTCTCTCCTCCCCATCCTTCGCCGGCCAAGCCGTCAAATTATCCCCCACCTCCTCCGACCTCCTCGGCGAAGGCCGCATTACCATGAGAAAAACCGCCGGAAAGCCCAAGCCCGTTTCCTCCGGTAGCCCATGGTACGGTCCCGATCGTGTCAAATACCTAGGCCCATTCTCTGGAGAACCCCCATCCTATCTAACCGGAGAATTCCCCGGTGACTACGGTTGGGACACTGCCGGCCTCTCCGCCGACCCCGAAACCTTCGCCAAAAACCGTGAACTCGAAGTAATCCACTCGAGATGGGCCATGCTCGGAGCCTTAGGCTGCGTATTCCCGGAGCTCCTCTCCCGAAACGGAGTCAAATTCGGCGAGGCTGTGTGGTTCAAAGCTGGATCACAAATCTTCAGCGAAGGTGGGCTCGACTATTTGGGGAACCCAAGCTTGGTGCACGCACAGAGCATTCTAGCGATTTGGGCATGTCAAGTAGTGCTCATGGGCGCAGTGGAAGGGTACAGAATTGCTGGGGGTCCGTTGGGTGAAATCACTGACCCGATTTACCCAGGTGGGAGCTTTGATCCATTGGGGCTGGCTGATGATCCAGAGGCATTCGCGGAATTGAAAGTGAAGGAGCTTAAGAATGGTAGATTGGCTATGTTTTCGATGTTCGGATTTTTCGTACAAGCGATTGTAACTGGGAAAGGGCCATTGGAGAATTTGGCTGATCACTTGGCTGACCCTGTTAACAACAATGCTTGGGCCTATGCTACTAACTTTGATGGACACAAAATTATTGGTGCCAAAAGAACTAGTGAGGCTAGCTCTTCAAAAGGTCAAGATGATAAGAAAACTAAATTTGAATCTAGAAGAAACAAAAGAGCTAGGAAAGCTACTTCTTTTGGATTAGATTTCATAATATACATGATAGAAGTGATAGTGTTGGTTGAGTCGGCATGTCGATTACTCATCATGCAGTCTGATTGA 996 50.1 MAASSMALSSPSFAGQAVKLSPTSSDLLGEGRITMRKTAGKPKPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFDGHKIIGAKRTSEASSSKGQDDKKTKFESRRNKRARKATSFGLDFIIYMIEVIVLVESACRLLIMQSD* 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14276644 14289144 - Chy11G195910.1 Chy11g01011 236772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01011 331 Gene3D Chlorophyll a/b binding protein domain 58 260 - -
Chy11g01011 331 MobiDBLite consensus disorder prediction 274 294 - -
Chy11g01011 331 Pfam Chlorophyll A-B binding protein 67 233 IPR022796 -
Chy11g01011 331 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC 1 264 - -
Chy11g01011 331 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 264 IPR001344 GO:0009765|GO:0016020
Chy11g01011 331 SUPERFAMILY Chlorophyll a-b binding protein 50 263 - -
Chy11g01011 331 MobiDBLite consensus disorder prediction 278 294 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00514 Chy-Chr1:3707462 Chy11g01011 Chy-Chr11:14276644 2.71E-150 dispersed
Chy02g00167 Chy-Chr2:1173807 Chy11g01011 Chy-Chr11:14276644 2.38E-148 dispersed
Chy04g01189 Chy-Chr4:18266412 Chy11g01011 Chy-Chr11:14276644 2.42E-168 dispersed
Chy06g01728 Chy-Chr6:20138010 Chy11g01011 Chy-Chr11:14276644 2.36E-118 dispersed
Chy11g01011 Chy-Chr11:14276644 Chy10g00781 Chy-Chr10:13858504 5.42E-37 dispersed
Chy07g00436 Chy-Chr7:3342271 Chy11g01011 Chy-Chr11:14276644 3.88E-22 transposed
Chy09g00113 Chy-Chr9:941941 Chy11g01011 Chy-Chr11:14276644 8.39E-67 transposed
Chy07g00435 Chy-Chr7:3334144 Chy11g01011 Chy-Chr11:14276644 3.49E-31 transposed
Chy11g01011 Chy-Chr11:14276644 Chy02g00166 Chy-Chr2:1171702 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01011 K08912 - csv:101213845 536.569