Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01015 ATGAAGAAACCGAATGTAAGCGGAACTCAACTTAACACGGACAATGGCGCAGCATTTTTACAGATTATGAAGCGGGATGAATCGATCCCTTTGCTAACCCAAGTTTCCAGTTCTAGATATCAGAGCAGAAGCTTAAACGACTACGACCCATGTTTTCCAATGGACTCAAGAGACAATAAAGTACCACCTCAAGGTGAGATTATTCAGATTCTAGGTGATTTTTTGGAAGTGGCCATTACATCAATTGTCTTCCTCAAAGGCATTTACCCTTCTGGTGCTTTTGAAAGAAGAAGGTACATGAATGCGGTTGTGCAGAAAGCTCGACATCCTGAGCTGCAGGATTACATCCACTCAACTGTTTCAGGGCTACTACCTTTCATCCAAAAGGGACTGGTGGAGAGAGTGGCGGTTATATTTTCCAACAGTGATAACGTCCAGCTGGAGAGATTTGTTTTCAAGCTCACAGTGAACCAGTCTTATGAATCAAAGGTTGAAAATTCCGACCTGGAGTTTGCCTTACGAGCATTCTTGATCAAGCTGTCTGTTTCAGAACCTTTAACCAAGGTTCTTTCTCCTGATTGCAAATGGGAAATAACTGCCTACTTCCAAACACTCCCAAGTTCCAGTACAAGTAAGGATGCAGAATCATGGATCCCAACAGATACCAAACAATGGCAACAACCACCAGTAATCACCCCCATCAAGTCCATGACCAGCCGACCTCTGAGTTTGCAGTTGTATCTAGAACACCCTGGCTTCTCTGAGCCAAATCATTATGAATAA 783 43.17 MKKPNVSGTQLNTDNGAAFLQIMKRDESIPLLTQVSSSRYQSRSLNDYDPCFPMDSRDNKVPPQGEIIQILGDFLEVAITSIVFLKGIYPSGAFERRRYMNAVVQKARHPELQDYIHSTVSGLLPFIQKGLVERVAVIFSNSDNVQLERFVFKLTVNQSYESKVENSDLEFALRAFLIKLSVSEPLTKVLSPDCKWEITAYFQTLPSSSTSKDAESWIPTDTKQWQQPPVITPIKSMTSRPLSLQLYLEHPGFSEPNHYE* 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14335381 14338122 - Chy11G195950.1 Chy11g01015 236776

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01015 260 Gene3D HORMA domain 62 251 IPR036570 -
Chy11g01015 260 ProSiteProfiles HORMA domain profile. 65 248 IPR003511 -
Chy11g01015 260 PANTHER MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2B 54 251 - -
Chy11g01015 260 PANTHER MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2 54 251 IPR045091 -
Chy11g01015 260 Pfam HORMA domain 71 167 IPR003511 -
Chy11g01015 260 SUPERFAMILY The spindle assembly checkpoint protein mad2 65 247 IPR036570 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01015 K13728 MAD2L2; mitotic spindle assembly checkpoint protein MAD2B - csv:101209787 404.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g00807 Chy-Chr10:14084075 Chy11g01015 Chy-Chr11:14335381 7.98E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1010 . . . . . . . . . . . . . . . . . . . . . . . . Cla02g01809 Cam02g1912 Cec02g1932 Cco02g1976 Clacu02g1894 Cmu02g1839 Cre02g2156 . . . . . . . Cme11g01581 Blo15g00603 . . . . . . . Sed05g3285 . . . . . . . . Bhi10g00977 Tan05g0619 Cmetu11g1548 . . . . . . . . . . . . Csa06g01178 Chy11g01015 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009127 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01015 Chy_Chr11 FPKM 8.200389 9.716422 14.397042 14.78575 7.973519 6.921781 9.136895 12.760238 12.85699 16.494095