Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01016 ATGAGGGAGTGCTATCGGTTTGCCTTGCTAGTGGTGTTTGCATGGTTCGTGAAAGGGTTGAATGCTAGTGCAGGAGATATTGACCCACACTACAGAACTTGTGTTAAACACTGTGAAGAAATAGGATGCATTGATCAGCAATGCTTTCCTCAGTGCAAATTCTCTTCGGATGGTGTTTCTGTTGGTCAGCCTTGGTATATGCAAGAACCACTTTACTTAAGGTGGAAACAATGGGACTGCCAGAGTGATTGCCGTTACCATTGCATGGTCAAACGAGAGGGTGAAAGAGAAGCACTTGGTTATGATCCTGTTAAATATCATGGTAAATGGCCTTTCAAGCGTATTTATGGGATCCAGTGCAGTGACGTGGATTTGACAGAGAAATTAGATTACTCATCTGCTGTGGCAGTACTTGGGTTTTCACTCATTCTGGCGATTCTAAGAAGTTTTAATGTGAGACATGAGGCTACCAGAGTCATGGTGAAGTTTACAGCTGAAGAGCTTCGTAGGATTATGGACTACAAGCATAACATTCGTAATATGTCTGTTATTGCTCATGTCGATCATGGGAAGTCCACTCTTACAGATTCTCTTGTGGCTGCTGCGGGTATCATTGCACAAGAAGTTGCCGGTGATGTACGAATGACAGATACTCGCCAAGATGAAGCAGAGCGTGGTATCACCATTAAATCTACTGGAATCTCCCTCTACTATGAGATGACTGATGAATCCTTGAAAAGTTACAAGGGAGAGAGATACGGAAATGAGTATCTTATCAATCTTATTGATTCACCTGGGCACGTTGACTTCTCGTCAGAGGTTACAGCTGCTTTGCGTATTACTGATGGTGCCCTTGTTGTGGTGGATTGCATCGAAGGTGTTTGTGTCCAAACAGAGACTGTGCTCCGTCAGGCTTTGGGAGAGAGGATTAGACCTGTCTTGACTGTTAACAAGATGGATAGGTGCTTCCTTGAACTTCAAGTGGATGGAGAAGAGGCTTATCAAACATTCCAGAGGGTCATTGAGAATGCCAATGTGATTATGGCCACATATGAGGATCCACTTCTTGGCGATGTTCAAGTGTACCCGGAGAAAGGAACAGTTGCTTTCTCTGCTGGTTTGCACGGTTGGGCATTTACCCTGACTAACTTTGCCAAGATGTATGCCTCCAAGTTTGGAGTAGATGAGGCTAAGATGATGGAGAGACTTTGGGGTGAGAATTTCTTTGATCCTGCAACCAAGAAGTGGACAAGCAAGAACACTGGCACGCCAACATGCAAGCGTGGGTTTGTCCAGTTCTGCTACGAACCTATCAAGCAGATCATTGCAACTTGCATGAACGATCGGAAGGACAAGCTATGGCCCATGTTGCAGAAGCTTGGTGTTGTCATGAAGTCTGATGAGAAGGATCTGATGGGCAAACCATTGATGAAGCGGGTCATGCAAACATGGCTACCAGCAAGTACTGCTCTTTTGGAAATGATGATCTTTCATCTTCCATCCCCTGCCAAGGCTCAAAAGTATCGTGTGGAGAATTTGTACGAGGGTCCACAAGATGATGCTTATGCTAGCGCCATTAGAAATTGTGATCCTGAGGGACCTCTTATGCTTTATGTATCAAAGATGATTCCAGCATCTGACAAGGGCAGGTTCTTTGCCTTCGGACGTGTGTTCTCTGGGAAAGTTTCAACTGGTTTGAAAGTTAGAATCATGGGCCCCAACTATGTTCCTGGTGAGAAAAAAGATTTGTATGTTAAGAGCGTCCAGAGAACTGTCATTTGGATGGGAAAGAAGCAAGAAACAGTGGAGGATGTGCCTTGTGGTAACACTGTTGCCTTGGTTGGGTTGGATCAGTTTATCACTAAGAATGCCACTCTGACGAATGAAAAGGAAGTTGATGCTCATCCAATTCGAGCCATGAAGTTTTCTGTATCTCCCGTCGTGCGTGTTGCCGTTCAGTGCAAGGTGGCCTCTGATCTTCCCAAGCTTGTGGAAGGACTTAAACGTCTGGCCAAGTCAGACCCTATGGTTGTGTGTACCATGGAGGAATCTGGTGAGCACATTGTTGCTGGCGCTGGAGAACTACATCTTGAGATCTGTTTGAAGGATTTGCAAGATGATTTCATGGGTGGAGCTGAGATCATAAAATCTGACCCTGTTGTCTCTTTCCGTGAAACCGTACTTGAGAGGTCATGCCGCACAGTGATGAGCAAGTCCCCTAACAAACACAATCGACTGTACATGGAAGCACGACCCATGGAGGATGGACTGGCAGAGGCTATTGATGATGGCCGCATTGGACCACGAGATGATCCTAAAGTTAGGTCTAAAATTTTGTCAGAGGAGTTTGGTTGGGACAAAGATCTTGCTAAGAAGATTTGGTGCTTTGGTCCTGAGACTACCGGCCCTAACATGGTGGTTGATATGTGTAAGGGAGTTCAATACCTGAATGAAATCAAGGATTCCGTTGTTGCTGGTTTCCAATGGGCGTCGAAAGAAGGTGCATTGGCGGAAGAGAACATGAGAGGCATCTGTTTTGAAGTTTGTGATGTGGTGCTTCACGCTGATGCCATCCACAGAGGAGGTGGTCAAGTGATTCCGACTGCTAGGAGGGTAATCTACGCTTCTCAGCTGACTGCCAAACCAAGACTTCTTGAGCCAGTGTACCTAGTGGAGATTCAGGCTCCCGAGCAAGCTCTTGGTGGTATCTACAGTGTTCTTAACCAAAAGCGTGGGCACGTCTTTGAGGAGATGCAGAGGCCTGGCACACCTCTTTACAACATCAAGGCATATCTCCCCGTCATCGAATCATTTGGGTTCTCGAGCACTTTGAGAGCTGCAACTTCTGGACAGGCATTCCCACAGTGTGTGTTTGACCATTGGGAAATGATGTCCTCAGATCCATTAGAAAGTGGGTCTCAAGCTGCGCAGTTGGTTGCTGATATCAGGAAGAGGAAGGGGTTGAAGGAGCAAATGACCCCACTTTCCGATTTCGAGGACAAGCTGTAG 3009 46.06 MRECYRFALLVVFAWFVKGLNASAGDIDPHYRTCVKHCEEIGCIDQQCFPQCKFSSDGVSVGQPWYMQEPLYLRWKQWDCQSDCRYHCMVKREGEREALGYDPVKYHGKWPFKRIYGIQCSDVDLTEKLDYSSAVAVLGFSLILAILRSFNVRHEATRVMVKFTAEELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDESLKSYKGERYGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDEAKMMERLWGENFFDPATKKWTSKNTGTPTCKRGFVQFCYEPIKQIIATCMNDRKDKLWPMLQKLGVVMKSDEKDLMGKPLMKRVMQTWLPASTALLEMMIFHLPSPAKAQKYRVENLYEGPQDDAYASAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVALVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTMEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPMEDGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSTLRAATSGQAFPQCVFDHWEMMSSDPLESGSQAAQLVADIRKRKGLKEQMTPLSDFEDKL* 1003
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14340912 14348944 - Chy11G195960.1 Chy11g01016 236777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01016 1002 Gene3D - 729 881 IPR014721 -
Chy11g01016 1002 Pfam Elongation Factor G, domain III 646 708 IPR041095 -
Chy11g01016 1002 Pfam Per1-like family 70 119 IPR007217 GO:0006506
Chy11g01016 1002 Pfam Per1-like family 121 163 IPR007217 GO:0006506
Chy11g01016 1002 Gene3D - 882 1002 - -
Chy11g01016 1002 Gene3D - 162 396 IPR027417 -
Chy11g01016 1002 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 176 503 IPR000795 GO:0003924|GO:0005525
Chy11g01016 1002 CDD eEF2_snRNP_like_C 886 964 - -
Chy11g01016 1002 SUPERFAMILY Ribosomal protein S5 domain 2-like 721 885 IPR020568 -
Chy11g01016 1002 SMART EFG_IV_2 765 881 IPR005517 GO:0005525
Chy11g01016 1002 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 217 232 IPR031157 -
Chy11g01016 1002 CDD EF2_II 534 629 - -
Chy11g01016 1002 Pfam Elongation factor G, domain IV 770 881 IPR005517 GO:0005525
Chy11g01016 1002 CDD aeEF2_snRNP_like_IV 718 890 - -
Chy11g01016 1002 Gene3D Translation factors 502 643 - -
Chy11g01016 1002 PRINTS GTP-binding elongation factor signature 224 232 IPR000795 GO:0003924|GO:0005525
Chy11g01016 1002 PRINTS GTP-binding elongation factor signature 180 193 IPR000795 GO:0003924|GO:0005525
Chy11g01016 1002 PRINTS GTP-binding elongation factor signature 260 270 IPR000795 GO:0003924|GO:0005525
Chy11g01016 1002 PRINTS GTP-binding elongation factor signature 276 287 IPR000795 GO:0003924|GO:0005525
Chy11g01016 1002 PRINTS GTP-binding elongation factor signature 312 321 IPR000795 GO:0003924|GO:0005525
Chy11g01016 1002 PANTHER - 160 1001 - -
Chy11g01016 1002 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 160 1001 - -
Chy11g01016 1002 Gene3D Elongation Factor G (Translational Gtpase), domain 3 645 722 - -
Chy11g01016 1002 CDD EF2_snRNP_III 646 718 - -
Chy11g01016 1002 Pfam Elongation factor Tu domain 2 553 626 IPR004161 GO:0005525
Chy11g01016 1002 SUPERFAMILY EF-G C-terminal domain-like 643 719 IPR035647 -
Chy11g01016 1002 SUPERFAMILY EF-G C-terminal domain-like 886 996 IPR035647 -
Chy11g01016 1002 TIGRFAM small_GTP: small GTP-binding protein domain 179 335 IPR005225 GO:0005525
Chy11g01016 1002 SUPERFAMILY Translation proteins 501 635 IPR009000 -
Chy11g01016 1002 SMART EFG_C_a 883 972 IPR000640 -
Chy11g01016 1002 Pfam Elongation factor G C-terminus 883 970 IPR000640 -
Chy11g01016 1002 Pfam Elongation factor Tu GTP binding domain 176 501 IPR000795 GO:0003924|GO:0005525
Chy11g01016 1002 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 500 IPR027417 -
Chy11g01016 1002 CDD EF2 179 389 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00906 Chy-Chr6:6646205 Chy11g01016 Chy-Chr11:14340912 6.33E-49 dispersed
Chy11g00990 Chy-Chr11:13925210 Chy11g01016 Chy-Chr11:14340912 0 dispersed
Chy11g00992 Chy-Chr11:13981602 Chy11g01016 Chy-Chr11:14340912 0 dispersed
Chy11g01016 Chy-Chr11:14340912 Chy11g01753 Chy-Chr11:23892859 3.38E-36 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01016 K03234 - csv:101209544 1682.92