Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy11g01016 | ATGAGGGAGTGCTATCGGTTTGCCTTGCTAGTGGTGTTTGCATGGTTCGTGAAAGGGTTGAATGCTAGTGCAGGAGATATTGACCCACACTACAGAACTTGTGTTAAACACTGTGAAGAAATAGGATGCATTGATCAGCAATGCTTTCCTCAGTGCAAATTCTCTTCGGATGGTGTTTCTGTTGGTCAGCCTTGGTATATGCAAGAACCACTTTACTTAAGGTGGAAACAATGGGACTGCCAGAGTGATTGCCGTTACCATTGCATGGTCAAACGAGAGGGTGAAAGAGAAGCACTTGGTTATGATCCTGTTAAATATCATGGTAAATGGCCTTTCAAGCGTATTTATGGGATCCAGTGCAGTGACGTGGATTTGACAGAGAAATTAGATTACTCATCTGCTGTGGCAGTACTTGGGTTTTCACTCATTCTGGCGATTCTAAGAAGTTTTAATGTGAGACATGAGGCTACCAGAGTCATGGTGAAGTTTACAGCTGAAGAGCTTCGTAGGATTATGGACTACAAGCATAACATTCGTAATATGTCTGTTATTGCTCATGTCGATCATGGGAAGTCCACTCTTACAGATTCTCTTGTGGCTGCTGCGGGTATCATTGCACAAGAAGTTGCCGGTGATGTACGAATGACAGATACTCGCCAAGATGAAGCAGAGCGTGGTATCACCATTAAATCTACTGGAATCTCCCTCTACTATGAGATGACTGATGAATCCTTGAAAAGTTACAAGGGAGAGAGATACGGAAATGAGTATCTTATCAATCTTATTGATTCACCTGGGCACGTTGACTTCTCGTCAGAGGTTACAGCTGCTTTGCGTATTACTGATGGTGCCCTTGTTGTGGTGGATTGCATCGAAGGTGTTTGTGTCCAAACAGAGACTGTGCTCCGTCAGGCTTTGGGAGAGAGGATTAGACCTGTCTTGACTGTTAACAAGATGGATAGGTGCTTCCTTGAACTTCAAGTGGATGGAGAAGAGGCTTATCAAACATTCCAGAGGGTCATTGAGAATGCCAATGTGATTATGGCCACATATGAGGATCCACTTCTTGGCGATGTTCAAGTGTACCCGGAGAAAGGAACAGTTGCTTTCTCTGCTGGTTTGCACGGTTGGGCATTTACCCTGACTAACTTTGCCAAGATGTATGCCTCCAAGTTTGGAGTAGATGAGGCTAAGATGATGGAGAGACTTTGGGGTGAGAATTTCTTTGATCCTGCAACCAAGAAGTGGACAAGCAAGAACACTGGCACGCCAACATGCAAGCGTGGGTTTGTCCAGTTCTGCTACGAACCTATCAAGCAGATCATTGCAACTTGCATGAACGATCGGAAGGACAAGCTATGGCCCATGTTGCAGAAGCTTGGTGTTGTCATGAAGTCTGATGAGAAGGATCTGATGGGCAAACCATTGATGAAGCGGGTCATGCAAACATGGCTACCAGCAAGTACTGCTCTTTTGGAAATGATGATCTTTCATCTTCCATCCCCTGCCAAGGCTCAAAAGTATCGTGTGGAGAATTTGTACGAGGGTCCACAAGATGATGCTTATGCTAGCGCCATTAGAAATTGTGATCCTGAGGGACCTCTTATGCTTTATGTATCAAAGATGATTCCAGCATCTGACAAGGGCAGGTTCTTTGCCTTCGGACGTGTGTTCTCTGGGAAAGTTTCAACTGGTTTGAAAGTTAGAATCATGGGCCCCAACTATGTTCCTGGTGAGAAAAAAGATTTGTATGTTAAGAGCGTCCAGAGAACTGTCATTTGGATGGGAAAGAAGCAAGAAACAGTGGAGGATGTGCCTTGTGGTAACACTGTTGCCTTGGTTGGGTTGGATCAGTTTATCACTAAGAATGCCACTCTGACGAATGAAAAGGAAGTTGATGCTCATCCAATTCGAGCCATGAAGTTTTCTGTATCTCCCGTCGTGCGTGTTGCCGTTCAGTGCAAGGTGGCCTCTGATCTTCCCAAGCTTGTGGAAGGACTTAAACGTCTGGCCAAGTCAGACCCTATGGTTGTGTGTACCATGGAGGAATCTGGTGAGCACATTGTTGCTGGCGCTGGAGAACTACATCTTGAGATCTGTTTGAAGGATTTGCAAGATGATTTCATGGGTGGAGCTGAGATCATAAAATCTGACCCTGTTGTCTCTTTCCGTGAAACCGTACTTGAGAGGTCATGCCGCACAGTGATGAGCAAGTCCCCTAACAAACACAATCGACTGTACATGGAAGCACGACCCATGGAGGATGGACTGGCAGAGGCTATTGATGATGGCCGCATTGGACCACGAGATGATCCTAAAGTTAGGTCTAAAATTTTGTCAGAGGAGTTTGGTTGGGACAAAGATCTTGCTAAGAAGATTTGGTGCTTTGGTCCTGAGACTACCGGCCCTAACATGGTGGTTGATATGTGTAAGGGAGTTCAATACCTGAATGAAATCAAGGATTCCGTTGTTGCTGGTTTCCAATGGGCGTCGAAAGAAGGTGCATTGGCGGAAGAGAACATGAGAGGCATCTGTTTTGAAGTTTGTGATGTGGTGCTTCACGCTGATGCCATCCACAGAGGAGGTGGTCAAGTGATTCCGACTGCTAGGAGGGTAATCTACGCTTCTCAGCTGACTGCCAAACCAAGACTTCTTGAGCCAGTGTACCTAGTGGAGATTCAGGCTCCCGAGCAAGCTCTTGGTGGTATCTACAGTGTTCTTAACCAAAAGCGTGGGCACGTCTTTGAGGAGATGCAGAGGCCTGGCACACCTCTTTACAACATCAAGGCATATCTCCCCGTCATCGAATCATTTGGGTTCTCGAGCACTTTGAGAGCTGCAACTTCTGGACAGGCATTCCCACAGTGTGTGTTTGACCATTGGGAAATGATGTCCTCAGATCCATTAGAAAGTGGGTCTCAAGCTGCGCAGTTGGTTGCTGATATCAGGAAGAGGAAGGGGTTGAAGGAGCAAATGACCCCACTTTCCGATTTCGAGGACAAGCTGTAG | 3009 | 46.06 | MRECYRFALLVVFAWFVKGLNASAGDIDPHYRTCVKHCEEIGCIDQQCFPQCKFSSDGVSVGQPWYMQEPLYLRWKQWDCQSDCRYHCMVKREGEREALGYDPVKYHGKWPFKRIYGIQCSDVDLTEKLDYSSAVAVLGFSLILAILRSFNVRHEATRVMVKFTAEELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDESLKSYKGERYGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDEAKMMERLWGENFFDPATKKWTSKNTGTPTCKRGFVQFCYEPIKQIIATCMNDRKDKLWPMLQKLGVVMKSDEKDLMGKPLMKRVMQTWLPASTALLEMMIFHLPSPAKAQKYRVENLYEGPQDDAYASAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVALVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTMEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPMEDGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSTLRAATSGQAFPQCVFDHWEMMSSDPLESGSQAAQLVADIRKRKGLKEQMTPLSDFEDKL* | 1003 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 14340912 | 14348944 | - | Chy11G195960.1 | Chy11g01016 | 236777 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy11g01016 | 1002 | Gene3D | - | 729 | 881 | IPR014721 | - | |
Chy11g01016 | 1002 | Pfam | Elongation Factor G, domain III | 646 | 708 | IPR041095 | - | |
Chy11g01016 | 1002 | Pfam | Per1-like family | 70 | 119 | IPR007217 | GO:0006506 | |
Chy11g01016 | 1002 | Pfam | Per1-like family | 121 | 163 | IPR007217 | GO:0006506 | |
Chy11g01016 | 1002 | Gene3D | - | 882 | 1002 | - | - | |
Chy11g01016 | 1002 | Gene3D | - | 162 | 396 | IPR027417 | - | |
Chy11g01016 | 1002 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 176 | 503 | IPR000795 | GO:0003924|GO:0005525 | |
Chy11g01016 | 1002 | CDD | eEF2_snRNP_like_C | 886 | 964 | - | - | |
Chy11g01016 | 1002 | SUPERFAMILY | Ribosomal protein S5 domain 2-like | 721 | 885 | IPR020568 | - | |
Chy11g01016 | 1002 | SMART | EFG_IV_2 | 765 | 881 | IPR005517 | GO:0005525 | |
Chy11g01016 | 1002 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 217 | 232 | IPR031157 | - | |
Chy11g01016 | 1002 | CDD | EF2_II | 534 | 629 | - | - | |
Chy11g01016 | 1002 | Pfam | Elongation factor G, domain IV | 770 | 881 | IPR005517 | GO:0005525 | |
Chy11g01016 | 1002 | CDD | aeEF2_snRNP_like_IV | 718 | 890 | - | - | |
Chy11g01016 | 1002 | Gene3D | Translation factors | 502 | 643 | - | - | |
Chy11g01016 | 1002 | PRINTS | GTP-binding elongation factor signature | 224 | 232 | IPR000795 | GO:0003924|GO:0005525 | |
Chy11g01016 | 1002 | PRINTS | GTP-binding elongation factor signature | 180 | 193 | IPR000795 | GO:0003924|GO:0005525 | |
Chy11g01016 | 1002 | PRINTS | GTP-binding elongation factor signature | 260 | 270 | IPR000795 | GO:0003924|GO:0005525 | |
Chy11g01016 | 1002 | PRINTS | GTP-binding elongation factor signature | 276 | 287 | IPR000795 | GO:0003924|GO:0005525 | |
Chy11g01016 | 1002 | PRINTS | GTP-binding elongation factor signature | 312 | 321 | IPR000795 | GO:0003924|GO:0005525 | |
Chy11g01016 | 1002 | PANTHER | - | 160 | 1001 | - | - | |
Chy11g01016 | 1002 | PANTHER | TRANSLATION ELONGATION FACTOR-RELATED | 160 | 1001 | - | - | |
Chy11g01016 | 1002 | Gene3D | Elongation Factor G (Translational Gtpase), domain 3 | 645 | 722 | - | - | |
Chy11g01016 | 1002 | CDD | EF2_snRNP_III | 646 | 718 | - | - | |
Chy11g01016 | 1002 | Pfam | Elongation factor Tu domain 2 | 553 | 626 | IPR004161 | GO:0005525 | |
Chy11g01016 | 1002 | SUPERFAMILY | EF-G C-terminal domain-like | 643 | 719 | IPR035647 | - | |
Chy11g01016 | 1002 | SUPERFAMILY | EF-G C-terminal domain-like | 886 | 996 | IPR035647 | - | |
Chy11g01016 | 1002 | TIGRFAM | small_GTP: small GTP-binding protein domain | 179 | 335 | IPR005225 | GO:0005525 | |
Chy11g01016 | 1002 | SUPERFAMILY | Translation proteins | 501 | 635 | IPR009000 | - | |
Chy11g01016 | 1002 | SMART | EFG_C_a | 883 | 972 | IPR000640 | - | |
Chy11g01016 | 1002 | Pfam | Elongation factor G C-terminus | 883 | 970 | IPR000640 | - | |
Chy11g01016 | 1002 | Pfam | Elongation factor Tu GTP binding domain | 176 | 501 | IPR000795 | GO:0003924|GO:0005525 | |
Chy11g01016 | 1002 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 163 | 500 | IPR027417 | - | |
Chy11g01016 | 1002 | CDD | EF2 | 179 | 389 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy06g00906 | Chy-Chr6:6646205 | Chy11g01016 | Chy-Chr11:14340912 | 6.33E-49 | dispersed | |
Chy11g00990 | Chy-Chr11:13925210 | Chy11g01016 | Chy-Chr11:14340912 | 0 | dispersed | |
Chy11g00992 | Chy-Chr11:13981602 | Chy11g01016 | Chy-Chr11:14340912 | 0 | dispersed | |
Chy11g01016 | Chy-Chr11:14340912 | Chy11g01753 | Chy-Chr11:23892859 | 3.38E-36 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy11g01016 | K03234 | - | csv:101209544 | 1682.92 |