Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy11g01024 | ATGAAGGAGATTAGCGGAAGAAAACAAGGTACATCTCTTTCACCATGTGCAGCTTGTAAGCTTCTCCGTCGTAGATGTGCTCAAGATTGTGTTTTTGCCCCTTACTTCCCCGCCGACGAGCCTCATAAATTTGCTAGTGTTCATAAGGTCTTCGGAGCTAGTAATGTTAACAAGATGCTACAGGAGCTACCAGAACAACAACGAAGCGATGCAGTAAGTTCAATGGTTTATGAAGCAAACGCAAGAGTACGAGATCCCGTTTACGGTTGCGTTGGAGCCATATCATCGTTACAACAACAGATCGATCTCTTGCAAACACAACTAGCAATAGCGCAAGCGGAGGTGGTTCACATGCGGATGCGCCACTTCCCGTCATCCTCTTACAACCCAACGGCAGGCCACTCATCGGAAACCGCCTCACCTTCCAGCAAGATGAACATTCCGGCGCCAAACAAGTCCTATTTTTCCATGGACATGGTTGACCACGACAGCATGGGGGAGACCTTGTGGTCGTCTTGCTAG | 522 | 48.47 | MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRHFPSSSYNPTAGHSSETASPSSKMNIPAPNKSYFSMDMVDHDSMGETLWSSC* | 174 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 14506810 | 14509058 | + | Chy11G196040.1 | Chy11g01024 | 236785 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy11g01024 | 173 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 3 | 168 | - | - | |
| Chy11g01024 | 173 | Coils | Coil | 94 | 114 | - | - | |
| Chy11g01024 | 173 | Pfam | Lateral organ boundaries (LOB) domain | 15 | 112 | IPR004883 | - | |
| Chy11g01024 | 173 | ProSiteProfiles | LOB domain profile. | 14 | 115 | IPR004883 | - | |
| Chy11g01024 | 173 | MobiDBLite | consensus disorder prediction | 126 | 147 | - | - | |
| Chy11g01024 | 173 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 3 | 3 | 168 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy06g00912 | Chy-Chr6:6692833 | Chy11g01024 | Chy-Chr11:14506810 | 3.36E-39 | dispersed | |
| Chy06g00913 | Chy-Chr6:6692998 | Chy11g01024 | Chy-Chr11:14506810 | 2.30E-39 | dispersed | |
| Chy11g01024 | Chy-Chr11:14506810 | Chy12g00863 | Chy-Chr12:13864557 | 1.68E-46 | dispersed | |
| Chy11g01986 | Chy-Chr11:25775513 | Chy11g01024 | Chy-Chr11:14506810 | 1.46E-37 | dispersed | |
| Chy12g00861 | Chy-Chr12:13837624 | Chy11g01024 | Chy-Chr11:14506810 | 1.28E-21 | dispersed | |
| Chy03g01649 | Chy-Chr3:18329150 | Chy11g01024 | Chy-Chr11:14506810 | 2.44E-23 | transposed | |
| Chy10g00333 | Chy-Chr10:8489242 | Chy11g01024 | Chy-Chr11:14506810 | 6.43E-52 | transposed | |
| Chy10g00629 | Chy-Chr10:12861315 | Chy11g01024 | Chy-Chr11:14506810 | 1.36E-21 | transposed | |
| Chy11g00654 | Chy-Chr11:7950457 | Chy11g01024 | Chy-Chr11:14506810 | 1.47E-22 | transposed | |
| Chy11g01314 | Chy-Chr11:19396267 | Chy11g01024 | Chy-Chr11:14506810 | 1.44E-22 | transposed | |
| Chy12g00474 | Chy-Chr12:6034872 | Chy11g01024 | Chy-Chr11:14506810 | 2.95E-39 | transposed | |
| Chy01g00877 | Chy-Chr1:7871667 | Chy11g01024 | Chy-Chr11:14506810 | 1.12E-68 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 18732 | PF03195 | LOB | 1.10E-43 | No_clan | Chy | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy11g01024 | - | - | csv:101220394 | 330.872 |