Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01024 ATGAAGGAGATTAGCGGAAGAAAACAAGGTACATCTCTTTCACCATGTGCAGCTTGTAAGCTTCTCCGTCGTAGATGTGCTCAAGATTGTGTTTTTGCCCCTTACTTCCCCGCCGACGAGCCTCATAAATTTGCTAGTGTTCATAAGGTCTTCGGAGCTAGTAATGTTAACAAGATGCTACAGGAGCTACCAGAACAACAACGAAGCGATGCAGTAAGTTCAATGGTTTATGAAGCAAACGCAAGAGTACGAGATCCCGTTTACGGTTGCGTTGGAGCCATATCATCGTTACAACAACAGATCGATCTCTTGCAAACACAACTAGCAATAGCGCAAGCGGAGGTGGTTCACATGCGGATGCGCCACTTCCCGTCATCCTCTTACAACCCAACGGCAGGCCACTCATCGGAAACCGCCTCACCTTCCAGCAAGATGAACATTCCGGCGCCAAACAAGTCCTATTTTTCCATGGACATGGTTGACCACGACAGCATGGGGGAGACCTTGTGGTCGTCTTGCTAG 522 48.47 MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRHFPSSSYNPTAGHSSETASPSSKMNIPAPNKSYFSMDMVDHDSMGETLWSSC* 174
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 14506810 14509058 + Chy11G196040.1 Chy11g01024 236785
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01024 173 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 168 - -
Chy11g01024 173 Coils Coil 94 114 - -
Chy11g01024 173 Pfam Lateral organ boundaries (LOB) domain 15 112 IPR004883 -
Chy11g01024 173 ProSiteProfiles LOB domain profile. 14 115 IPR004883 -
Chy11g01024 173 MobiDBLite consensus disorder prediction 126 147 - -
Chy11g01024 173 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 3 168 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00912 Chy-Chr6:6692833 Chy11g01024 Chy-Chr11:14506810 3.36E-39 dispersed
Chy06g00913 Chy-Chr6:6692998 Chy11g01024 Chy-Chr11:14506810 2.30E-39 dispersed
Chy11g01024 Chy-Chr11:14506810 Chy12g00863 Chy-Chr12:13864557 1.68E-46 dispersed
Chy11g01986 Chy-Chr11:25775513 Chy11g01024 Chy-Chr11:14506810 1.46E-37 dispersed
Chy12g00861 Chy-Chr12:13837624 Chy11g01024 Chy-Chr11:14506810 1.28E-21 dispersed
Chy03g01649 Chy-Chr3:18329150 Chy11g01024 Chy-Chr11:14506810 2.44E-23 transposed
Chy10g00333 Chy-Chr10:8489242 Chy11g01024 Chy-Chr11:14506810 6.43E-52 transposed
Chy10g00629 Chy-Chr10:12861315 Chy11g01024 Chy-Chr11:14506810 1.36E-21 transposed
Chy11g00654 Chy-Chr11:7950457 Chy11g01024 Chy-Chr11:14506810 1.47E-22 transposed
Chy11g01314 Chy-Chr11:19396267 Chy11g01024 Chy-Chr11:14506810 1.44E-22 transposed
Chy12g00474 Chy-Chr12:6034872 Chy11g01024 Chy-Chr11:14506810 2.95E-39 transposed
Chy01g00877 Chy-Chr1:7871667 Chy11g01024 Chy-Chr11:14506810 1.12E-68 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18732 PF03195 LOB 1.10E-43 No_clan Chy TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01024 - - csv:101220394 330.872