Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01027 ATGCATATGGAGAATTTATCTTCTAGTGATCTATCACATTCGGCAATGTATGAAAATAGTGATTCGAAGCACTCACAGGATGGGTTGGAGGATGGCTCTCGATGGTATTTTTCTAGGAAGGAATTAGAGGAATTTTCACCTTCTAAACAAGATGGGATTGACTTGAAAAAGGAGACATATTTACGCAAATCATACTGTACATTTCTTCAAGATTTGGGAATGAGACTTAAAGTTCCCCAGGTAACCATTGCTACAGCAATAATTTTTTGCCATAGGTTCTTTCTTCGGCAATCTCATGCAAAGAATGACCGAAGGACAATTGCGACAGTGTGTATGTTTCTCGCAGGAAAGGTTGAAGAAACCCCTCGCCCGTTGAAGGACGTTATCATGGTCTCATATGAAATCATCAACAAAAAGGATCCTACTGCAGCCCAGAAAATTAGGCAAAAGGAGGTGTATGAACGGCAAAAAGAGTTAATTTTACTTGGGGAGAGGGTTGTTCTTGCAACTCTTGGTTTTGATCTTAATGTGCACCATCCTTACAAACCCCTTGTTGAGGCAATTAAAAAATTCAAAGTTGCTCAAAATGCCTTGGCTCAAGTAGCTTGGAATTTCGTCAATGATGGATTGCGGACATCTCTTTGCTTGCAATTTAAGCCTCACCATATTGCGGCCGGTGCCATTTTCCTTGCTGCCAAATTTCTCAAAGTTAAACTCCCATCAGATGGGGAAAAGGTGTGGTGGCAAGAGTTTGATGTCACCCCACGGCAATTGGAGGAAGTCAGCAATCAAATGTTAGAACTTTATGAACAAAATCGGTTACCGCCTTCTGGTGAAGCTGAGGGAAGCATTGGAGGTGGTCCTACTAATCAAACCCCTACAAAAGCTCCTACCAACAGCGAAGAACGCGCCATAGTAGACAATCATGCACTTGGTGTAGGTATTGCTACCTCAAGACTTGGAACCTCAAAAGCTGGTTCATCTAGGCCAGCATCTGAACACTCATTTGCAGGTGACCAGCCATCAAGAGCAATGCAGAATCATAGTATTGAAAGTTCGAATGTAGATTTTAGAAGTCCTTCCAATCATAAAACAGGTAGTGAATCTAAGGTTAGACAGGAGATGGAGCCATCGGCTTTCCATGACAAAGGAAACACTCAAAACTCACTAAAGCATCAGTCAGAGGGATTGGCTGAGCAAGACCACGGAAATGATATGAAAATGAATGAAGCAGCGACAAGGGATGCAATGGAATTGAAAGACAAACATGTAATTCGAAATATGGATTTTAGAGAAGTTACACTCGGAAAATCTCAGGACGTTATCAAAAAGATCGACAAGGACAAAGTAAAGGCTGCGCTTGAGAAACGAAGGAAGTCTCTTGGCAGCATGACCCAGAAAAAAGAATTGATGGATGAGGATGATCTCATTGAAAGGGAGTTGGAAGCTGGTGTTGAGATGGCTGTTGGCAGTGAGAAAAACAAGCGAGAACAGAAGCAAAGTTGGAATAAGTCATCAAATAAACAAGAATACGATGATTTGTATCGAGAGGACGATAAAGAGGAGCATCCTCAACGAACACGGCAGTCATCATATAATCTAGACTCTAGCAACATAGAAGAAGGGGAGTTTGCAAATGCTAATGAAGTCAGTTATGGGTATCAAGATTCCCCCAAGTCAAACAGTCATCAAGGGCTATGCTCTCTTGTGGATCCTCTTAGAATGTCAGCTTCTGCTATGCTTTTCATATCGAGTATGTCACAAAGCAGTGGGCCTGATTTCAATCTACCGGATGAGATTTTGGCGGTGATTCCAACGGATCCATATGATCAGCTCGACCTTGCGCGTAAAATCACCTCCATGGCGATTGCCTCTCGTGTGTCGAATCTTGAAGCTGAAATGATAAGAATGAAGCAAAAGCTTAAGGAGAAGGAAAAAACTATTTATGACCTGCAGGAGAAGATGTCTCACCTCGAGCACGCGAACCAGGAAGCTGAATCTAGGTTGAAGATTGCGCTTGATGATAATACGAGGCTTTCCAGGGAAAGAGATTCTCTATCAATGACTTCAAAGAAACTTGGACGTGATTTGGCAAAGCTGGAGACATTTAAGAGACAACTTATGCAATCATTAAGTGATGAATCCTCTCAAACTGAAACTGTTGATATTGGAACCTGTGATCAAGCAGTTCCTAAAGCATATACTGACAAGGATGAGGTAACTAATGGACACGCCACACATTCATTCGGTGGTTCCACAGAGACGGGAAGCACAATAGTTGAAGGAAAGCATATTGGACAAAGATTTTCATCGCCGTATATCACCCCAAGGTTCACTCCATCAGCGACTCCAAAAATTATTTCAACCAGTGTATCCCCCAGAGGGTATTCCACTGTTGCTTCTCCACAGATAATGTCTGGTTCAACTTCTCCAACAAAACACTCATACGATGGACGAATTGCACTATCTCCATGGTACCCATCAAGCCAGCAGTCTTCAGCAGCAAGTTCTCCTCCTCGTTCCCGTCAACTGTCTGGTCGAGCTGCACGGGTGGATGGCAAGGAGTTTTTTCGCCTAGCCAGGAGTCGTCTGTCACTAGAGCAGTTCAGTGCCTTCCTTTCGAACATAAAGGAACTCAATGCTCATAAGCAGACTAGAGAGGGGCTGGCTTGCAAGAGAACCCAGAAAAGTGATCATCATATGCTCCAAAATCAGCGTACGTTCACTTGCAAGCTATCTGCTCCATCACAACTCCAACTTGTCTAG 2766 43.02 MHMENLSSSDLSHSAMYENSDSKHSQDGLEDGSRWYFSRKELEEFSPSKQDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIMVSYEIINKKDPTAAQKIRQKEVYERQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELYEQNRLPPSGEAEGSIGGGPTNQTPTKAPTNSEERAIVDNHALGVGIATSRLGTSKAGSSRPASEHSFAGDQPSRAMQNHSIESSNVDFRSPSNHKTGSESKVRQEMEPSAFHDKGNTQNSLKHQSEGLAEQDHGNDMKMNEAATRDAMELKDKHVIRNMDFREVTLGKSQDVIKKIDKDKVKAALEKRRKSLGSMTQKKELMDEDDLIERELEAGVEMAVGSEKNKREQKQSWNKSSNKQEYDDLYREDDKEEHPQRTRQSSYNLDSSNIEEGEFANANEVSYGYQDSPKSNSHQGLCSLVDPLRMSASAMLFISSMSQSSGPDFNLPDEILAVIPTDPYDQLDLARKITSMAIASRVSNLEAEMIRMKQKLKEKEKTIYDLQEKMSHLEHANQEAESRLKIALDDNTRLSRERDSLSMTSKKLGRDLAKLETFKRQLMQSLSDESSQTETVDIGTCDQAVPKAYTDKDEVTNGHATHSFGGSTETGSTIVEGKHIGQRFSSPYITPRFTPSATPKIISTSVSPRGYSTVASPQIMSGSTSPTKHSYDGRIALSPWYPSSQQSSAASSPPRSRQLSGRAARVDGKEFFRLARSRLSLEQFSAFLSNIKELNAHKQTREGLACKRTQKSDHHMLQNQRTFTCKLSAPSQLQLV* 922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14610199 14631440 - Chy11G196070.1 Chy11g01027 236788

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01027 921 MobiDBLite consensus disorder prediction 1 30 - -
Chy11g01027 921 MobiDBLite consensus disorder prediction 319 405 - -
Chy11g01027 921 MobiDBLite consensus disorder prediction 827 847 - -
Chy11g01027 921 SUPERFAMILY Cyclin-like 32 177 IPR036915 -
Chy11g01027 921 MobiDBLite consensus disorder prediction 488 503 - -
Chy11g01027 921 SUPERFAMILY Cyclin-like 178 274 IPR036915 -
Chy11g01027 921 PANTHER CYCLIN 3 526 IPR043198 GO:0006357|GO:0016538
Chy11g01027 921 MobiDBLite consensus disorder prediction 274 300 - -
Chy11g01027 921 SMART cyclin_7 67 169 IPR013763 -
Chy11g01027 921 SMART cyclin_7 182 267 IPR013763 -
Chy11g01027 921 MobiDBLite consensus disorder prediction 320 362 - -
Chy11g01027 921 MobiDBLite consensus disorder prediction 827 843 - -
Chy11g01027 921 Coils Coil 627 682 - -
Chy11g01027 921 MobiDBLite consensus disorder prediction 509 528 - -
Chy11g01027 921 CDD CYCLIN 176 237 IPR013763 -
Chy11g01027 921 Gene3D - 177 277 - -
Chy11g01027 921 MobiDBLite consensus disorder prediction 363 379 - -
Chy11g01027 921 Gene3D - 26 175 - -
Chy11g01027 921 PANTHER - 3 526 - -
Chy11g01027 921 MobiDBLite consensus disorder prediction 488 539 - -
Chy11g01027 921 MobiDBLite consensus disorder prediction 1 22 - -
Chy11g01027 921 CDD CYCLIN 61 132 IPR013763 -
Chy11g01027 921 MobiDBLite consensus disorder prediction 380 394 - -
Chy11g01027 921 Pfam Cyclin, N-terminal domain 36 176 IPR006671 -
Chy11g01027 921 MobiDBLite consensus disorder prediction 284 300 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01027 K15188 CCNT; cyclin T - csv:101220862 1107.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01436 Chy-Chr3:17025822 Chy11g01027 Chy-Chr11:14610199 9.36E-115 dispersed
Chy05g00230 Chy-Chr5:1916879 Chy11g01027 Chy-Chr11:14610199 1.50E-66 dispersed
Chy06g00642 Chy-Chr6:4351888 Chy11g01027 Chy-Chr11:14610199 1.02E-46 dispersed
Chy08g01012 Chy-Chr8:17354859 Chy11g01027 Chy-Chr11:14610199 5.54E-38 dispersed
Chy11g00004 Chy-Chr11:64987 Chy11g01027 Chy-Chr11:14610199 2.00E-19 dispersed
Chy11g01027 Chy-Chr11:14610199 Chy12g00470 Chy-Chr12:5980086 1.97E-28 dispersed
Chy11g01027 Chy-Chr11:14610199 Chy11g01450 Chy-Chr11:21285075 4.38E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g39 . . Bda06g00247 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy11g01027 . . . . . . Bpe07g00462 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1087 . . . . Bpe07g00462 . . . . . . . . . . . Cpe16g00717 . . . . . . . Cla02g01817 Cam02g1923 Cec02g1948 . . Cmu02g1852 . . . . . . . . Cme11g01601 . . . . . . . Bma12g00592 . . . . . . . . . Bhi10g00958 . . . Hepe08g0633 . . . . . . . . . . Csa06g01165 Chy11g01027 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000905 2 5 2 4 2 3 4 3 3 2 3 2 4 1 2 4 3 3 3 1 2 2 3 3 3 2 2 5 2 1 81
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01027 Chy_Chr11 FPKM 0.0 0.0 2.357323 2.212241 14.362575 9.592967 13.522611 0.080687 0.06838 0.0