Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01032 ATGCAGATCTTTGTCAAAACCCTAACTGGGAAGACGATCACTCTCGAAGTTGAGAGCAGTGATACCATCGATAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAGCAGAGATTAATTTTTGCTGGTAAGCAATTGGAAGATGGTCGAACGCTTGCAGATTATAACATTCAAAAGGAGTCAACCCTTCACTTGGTTTTGAGGCTTAGGGGAGGTACTATGATTAAGGTCAAGACACTGACCGGGAAGGAAATTGAGATTGACATCGAGCCAACTGACACAATTGATCGCATTAAGGAGCGGGTTGAGGAGAAAGAGGGGATTCCCCCTGTACAGCAAAGGCTCATTTATGCAGGTAAACAGCTTGGAGATGACAAAACAGCTAAAGACTACAACATCGAGGGTGGTTCTGTTCTCCATCTAGTGCTAGCCCTGAGGGGTGGTTATCTGTAA 465 45.16 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGYL* 155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14741608 14743786 + Chy11G196120.1 Chy11g01032 236793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01032 154 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Chy11g01032 154 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Chy11g01032 154 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Chy11g01032 154 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Chy11g01032 154 PANTHER - 1 152 - -
Chy11g01032 154 PANTHER UBIQUITIN 1 152 - -
Chy11g01032 154 PRINTS Ubiquitin signature 11 31 IPR019956 -
Chy11g01032 154 PRINTS Ubiquitin signature 32 52 IPR019956 -
Chy11g01032 154 PRINTS Ubiquitin signature 53 74 IPR019956 -
Chy11g01032 154 CDD Ubl_NEDD8 79 152 IPR038738 -
Chy11g01032 154 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Chy11g01032 154 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Chy11g01032 154 Gene3D - 78 153 - -
Chy11g01032 154 Gene3D - 1 77 - -
Chy11g01032 154 SMART ubq_7 77 148 IPR000626 GO:0005515
Chy11g01032 154 SMART ubq_7 1 72 IPR000626 GO:0005515
Chy11g01032 154 CDD Ubl_ubiquitin 1 76 - -
Chy11g01032 154 SUPERFAMILY Ubiquitin-like 78 152 IPR029071 -
Chy11g01032 154 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00448 Chy-Chr2:2818042 Chy11g01032 Chy-Chr11:14741608 3.71E-08 dispersed
Chy04g00990 Chy-Chr4:14589293 Chy11g01032 Chy-Chr11:14741608 1.21E-82 dispersed
Chy06g01793 Chy-Chr6:21471493 Chy11g01032 Chy-Chr11:14741608 8.26E-17 dispersed
Chy07g00952 Chy-Chr7:14047026 Chy11g01032 Chy-Chr11:14741608 2.40E-26 dispersed
Chy11g01032 Chy-Chr11:14741608 Chy11g01882 Chy-Chr11:25041266 6.35E-12 dispersed
Chy11g01032 Chy-Chr11:14741608 Chy02g00381 Chy-Chr2:2432037 5.17E-82 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01032 K12158 - csv:101214716 293.893