Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01039 ATGGATGTTGTTACCCGTTACAGACCCAACCAACTTCTATCTCCCGCCACTCCGTTCCTCCAACAATATCAAAATGTGATTCTTTTCACTCTTCCGGCCAAGCGGCGAGCTAATTACTCCCGTCAGAGGGCGAAATTACGAGTTCTAGGATCCGCTGATGGTAATGCAGCTGACGAGTCACCTTTTGGAAGTTTCAGTAGGTCAGTTCGTCGTGGGTCCGATAGATTCTGGTTGAATTTTGGCGAGTCTATTAGAAAGGAAACTGGGTTTGATTTGAAGAATACTGATGGGAGGTTGGTTGAGTTTTTTGCGCGGGCGAATGAACGTTTAGGGAATATGGGAACTGAGCTGCAGAGGTTGAAGAACGAAACTTTGCCGGAATTTATAACCTGGAATCGTTGGGATCGCTGGAAGGATTTCAAGAACTGGGAGCCAAAACGAGTGGGTGCTCTGTTTCTCTATGCTCTTGTGATGATTGTTTCTTGTCAAAGAATTTATATGTCAGTTCGAGCGCCATTCATAAATCGCGAAAGACTAAAGCTAACAGAGGCTTATATGGAGGCATTGATTCCTGAGCCGTCTCCTAATAATATTAGAAAGTTTAAGAAAGGGTTATGGAGGAAAACAATGCCTAAAGGTCTGAAAATAAAGAAATTTATTGAAGGAACTGACGGAACCCTTGTTCAAGATTCTTCTTATGTTGGAGAAGATGCATATGATGATTCGGAGCTTCTGCAAGATAATGTTAAAAAGATTATTGACAGTGATGAAAAAATTAAGGGTGATGAAAAGGAGAACATAAAGGAACAATTGGAGATATCAGGACAAAAGGACTCTGGAACTTGGCGTGAAAGGCTACAAACATGGAAGGAGATCCTTAGGAAAGAGAAATTAACTGAAGCTATAGATTCTCTGCGTGCTAAATATGTTGTTGAATTCGACATGAAAGAGGTTGAAAAGAGTCTTCGTAAGGACGTGGTAGAAAAAAAAACAGATACTCAAGGAACAAGGGCACTTTGGGTATCTAAGAGATGGTGGCATTATCGACCTAAACTTCCTTACACATACTTTCTTGACAAACTTGATTCCTCTGAGGTTGCTGCTGTTGTCTTCACTGAGGACATGAAAAGATTGTTTGTAACAATGAAAGAAGGTTTTCCATTAGAGTATACTGTTGATATTCCCCTTGATCCTCACTTGTTTGAGGCTATCACCAGTTCTGGAGTTGAAGTTGATCTTCTTCAGAAGCGCCAAATCCATTATTTTCTCAAAGTTCTGATTGCATTGCTGCCTGGACTATTGATCCTTTGGTTCATCAGAGAGTCTGTTATGCTTCTAAGTATTACTACTAAGCGTCTTCTTTATAAAAAGTACCAACAACTTTTTGACATGGAACATACGGAAAACTTTATCCTGCCAATCGGGAATGTTGGTGAAACAACATCAATGCACAAGGAAGTAGTTTTGGGTGGTGATGTTTGGGATCTTCTTGATGAATTGATGATTTATATGCAGAATCCTATGCAGTACTATGAAAAAAGGGTGCCGTTTGTGCGGGGTGTTCTTCTTTCTGGACCTCCAGGTACTGGGAAAACACTTTTTGCGAGGACACTTTCCAAGCAAAGTGGATTGCCCTTTGTGTATGCATCAGGGGCAGAGTTTACGGATAGTGAAAAAAGTGGTGCAGCAAGGATCAATGAGATATTTTCTATTGCAAGAAGAAATGCTCCATCATTTGTTTTTGTTGATGAAATTGATGCCATTGCTGGAAGGCATGCAAGAAATGATCCAAGAAGGAGAGCAACTTTTGAGGCTTTGATTGCCCAACTTGACGGCGAGAAGGAAACAACTGGTATTGATCGGTTCTCGCTTAGACAAGCTGTGATATTCATCTGTGCAACCAATAGGCCTGATGAGTTAGACCTAGAATTTGTTCGTTCTGGACGCATTGATCGTCGCTTGTACATAGGATTGCCAGATGCAAAACAGAGAGTGCAAATATTTGGTGTGCACAGTGCAGGAAAGCAACTTGCAGAGGACGTTGATTTTGGGAAGCTTGTCTACCGCACAGTTGGTTTTTCTGGAGCAGATGTACGGAATCTTGTCAATGAGGCGGCAATAATGTCGGTGAGGAAGGGACATTCTAGGATCAACCAACAAGACCTTGTTGATGTTTTAGACAAACAACTGCTTGAGGGTATGGGTGTACTTCTCACCGAAGAAGAGCAACAGAGATGTGAAGAAAGAGTGTCCGTAGAAAAAAGGAGACTGCTGGCTGTACATGAAGCTGGTCATATATTGTTAGCTCACTTGTTTCCTCGTTTTGATTGGCATGCCTTTTCTCAGCTTCTACCAGGGGGCAAGGAAACAGCAATTTCTGTTTTCTTCCCTCGAGAAGATATGGTTGGTCAAGGTTACACCACCTTCGGGTACTTGAAAATGCAAATGGTAGTTGCTCATGGAGGACGCTGTGCTGAACGTCTTATATTTGGTAATGACATAACTGATGGAGGAAAGGATGACCTAGAAAAGATAACGAAGATTGCTAGGGAGATGGTAATCAGTCCTCAGAATTCAAGACTTGGTCTTGCTGCCTTAACAAAGAAGTTTGGGATGACGGATCAACCAGATAATCCAGATGGCGAATTGATTAGATATAGGTGGGATGATCCACGAGTGACTCCTGTCAACATGACACTGGAATTGTCTGAGTTATTTTCACGGGAGTTGACAAGGTATATTGAAGAGACTGAAGAATTGGCGATGAACGGTTTGAGGGAAAACAGACACATACTGGATATGATTACCGAGGAGCTGCTGTATAAGTCTAGAATAACTGGATTGGAAGTTATAGAGAAAATGAAGGACCTGTCGCCATTCATGTTCGAGGACTTCATCAAGCCAATTCAGATAGACTTGGATGTGACATATACCCCGCACCGCTGCACAGATGTTGAAGGGGCTGTTTCTGTTCTTGGTGTTGCTTTGTTTGATGTTGGTGGATGCAGTCAAGAGCCAACAAAGGGAGGAGCTAAGCAGAGGCCCTTGCTTTATGCATAA 3060 42.12 MDVVTRYRPNQLLSPATPFLQQYQNVILFTLPAKRRANYSRQRAKLRVLGSADGNAADESPFGSFSRSVRRGSDRFWLNFGESIRKETGFDLKNTDGRLVEFFARANERLGNMGTELQRLKNETLPEFITWNRWDRWKDFKNWEPKRVGALFLYALVMIVSCQRIYMSVRAPFINRERLKLTEAYMEALIPEPSPNNIRKFKKGLWRKTMPKGLKIKKFIEGTDGTLVQDSSYVGEDAYDDSELLQDNVKKIIDSDEKIKGDEKENIKEQLEISGQKDSGTWRERLQTWKEILRKEKLTEAIDSLRAKYVVEFDMKEVEKSLRKDVVEKKTDTQGTRALWVSKRWWHYRPKLPYTYFLDKLDSSEVAAVVFTEDMKRLFVTMKEGFPLEYTVDIPLDPHLFEAITSSGVEVDLLQKRQIHYFLKVLIALLPGLLILWFIRESVMLLSITTKRLLYKKYQQLFDMEHTENFILPIGNVGETTSMHKEVVLGGDVWDLLDELMIYMQNPMQYYEKRVPFVRGVLLSGPPGTGKTLFARTLSKQSGLPFVYASGAEFTDSEKSGAARINEIFSIARRNAPSFVFVDEIDAIAGRHARNDPRRRATFEALIAQLDGEKETTGIDRFSLRQAVIFICATNRPDELDLEFVRSGRIDRRLYIGLPDAKQRVQIFGVHSAGKQLAEDVDFGKLVYRTVGFSGADVRNLVNEAAIMSVRKGHSRINQQDLVDVLDKQLLEGMGVLLTEEEQQRCEERVSVEKRRLLAVHEAGHILLAHLFPRFDWHAFSQLLPGGKETAISVFFPREDMVGQGYTTFGYLKMQMVVAHGGRCAERLIFGNDITDGGKDDLEKITKIAREMVISPQNSRLGLAALTKKFGMTDQPDNPDGELIRYRWDDPRVTPVNMTLELSELFSRELTRYIEETEELAMNGLRENRHILDMITEELLYKSRITGLEVIEKMKDLSPFMFEDFIKPIQIDLDVTYTPHRCTDVEGAVSVLGVALFDVGGCSQEPTKGGAKQRPLLYA* 1020
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14853980 14873435 - Chy11G196190.1 Chy11g01039 236800

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01039 1019 Pfam AAA+ lid domain 680 722 IPR041569 -
Chy11g01039 1019 Gene3D - 660 733 - -
Chy11g01039 1019 SMART AAA_5 517 660 IPR003593 -
Chy11g01039 1019 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 12, CHLOROPLASTIC 7 977 - -
Chy11g01039 1019 Pfam Peptidase family M41 750 950 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Chy11g01039 1019 Coils Coil 103 123 - -
Chy11g01039 1019 Gene3D Peptidase M41 743 958 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Chy11g01039 1019 SUPERFAMILY FtsH protease domain-like 753 963 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Chy11g01039 1019 CDD AAA 519 658 - -
Chy11g01039 1019 PANTHER ATP-DEPENDENT PROTEASE 7 977 - -
Chy11g01039 1019 Gene3D - 478 659 IPR027417 -
Chy11g01039 1019 Pfam ATPase family associated with various cellular activities (AAA) 521 657 IPR003959 GO:0005524|GO:0016887
Chy11g01039 1019 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 484 728 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01039 K03798 ftsH, hflB; cell division protease FtsH [EC:3.4.24.-] - csv:101215439 1850.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy11g01039 Chy-Chr11:14853980 Chy07g00378 Chy-Chr7:3044401 2.48E-80 dispersed
Chy11g01039 Chy-Chr11:14853980 Chy07g00246 Chy-Chr7:1949033 2.60E-56 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1138 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme11g01629 Blo15g00635 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy11g01039 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009820 1 2 2 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01039 Chy_Chr11 FPKM 2.200997 1.862416 0.0 0.0 0.0 0.0 0.0 0.0 0.100526 0.0