Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01039 ATGGATGTTGTTACCCGTTACAGACCCAACCAACTTCTATCTCCCGCCACTCCGTTCCTCCAACAATATCAAAATGTGATTCTTTTCACTCTTCCGGCCAAGCGGCGAGCTAATTACTCCCGTCAGAGGGCGAAATTACGAGTTCTAGGATCCGCTGATGGTAATGCAGCTGACGAGTCACCTTTTGGAAGTTTCAGTAGGTCAGTTCGTCGTGGGTCCGATAGATTCTGGTTGAATTTTGGCGAGTCTATTAGAAAGGAAACTGGGTTTGATTTGAAGAATACTGATGGGAGGTTGGTTGAGTTTTTTGCGCGGGCGAATGAACGTTTAGGGAATATGGGAACTGAGCTGCAGAGGTTGAAGAACGAAACTTTGCCGGAATTTATAACCTGGAATCGTTGGGATCGCTGGAAGGATTTCAAGAACTGGGAGCCAAAACGAGTGGGTGCTCTGTTTCTCTATGCTCTTGTGATGATTGTTTCTTGTCAAAGAATTTATATGTCAGTTCGAGCGCCATTCATAAATCGCGAAAGACTAAAGCTAACAGAGGCTTATATGGAGGCATTGATTCCTGAGCCGTCTCCTAATAATATTAGAAAGTTTAAGAAAGGGTTATGGAGGAAAACAATGCCTAAAGGTCTGAAAATAAAGAAATTTATTGAAGGAACTGACGGAACCCTTGTTCAAGATTCTTCTTATGTTGGAGAAGATGCATATGATGATTCGGAGCTTCTGCAAGATAATGTTAAAAAGATTATTGACAGTGATGAAAAAATTAAGGGTGATGAAAAGGAGAACATAAAGGAACAATTGGAGATATCAGGACAAAAGGACTCTGGAACTTGGCGTGAAAGGCTACAAACATGGAAGGAGATCCTTAGGAAAGAGAAATTAACTGAAGCTATAGATTCTCTGCGTGCTAAATATGTTGTTGAATTCGACATGAAAGAGGTTGAAAAGAGTCTTCGTAAGGACGTGGTAGAAAAAAAAACAGATACTCAAGGAACAAGGGCACTTTGGGTATCTAAGAGATGGTGGCATTATCGACCTAAACTTCCTTACACATACTTTCTTGACAAACTTGATTCCTCTGAGGTTGCTGCTGTTGTCTTCACTGAGGACATGAAAAGATTGTTTGTAACAATGAAAGAAGGTTTTCCATTAGAGTATACTGTTGATATTCCCCTTGATCCTCACTTGTTTGAGGCTATCACCAGTTCTGGAGTTGAAGTTGATCTTCTTCAGAAGCGCCAAATCCATTATTTTCTCAAAGTTCTGATTGCATTGCTGCCTGGACTATTGATCCTTTGGTTCATCAGAGAGTCTGTTATGCTTCTAAGTATTACTACTAAGCGTCTTCTTTATAAAAAGTACCAACAACTTTTTGACATGGAACATACGGAAAACTTTATCCTGCCAATCGGGAATGTTGGTGAAACAACATCAATGCACAAGGAAGTAGTTTTGGGTGGTGATGTTTGGGATCTTCTTGATGAATTGATGATTTATATGCAGAATCCTATGCAGTACTATGAAAAAAGGGTGCCGTTTGTGCGGGGTGTTCTTCTTTCTGGACCTCCAGGTACTGGGAAAACACTTTTTGCGAGGACACTTTCCAAGCAAAGTGGATTGCCCTTTGTGTATGCATCAGGGGCAGAGTTTACGGATAGTGAAAAAAGTGGTGCAGCAAGGATCAATGAGATATTTTCTATTGCAAGAAGAAATGCTCCATCATTTGTTTTTGTTGATGAAATTGATGCCATTGCTGGAAGGCATGCAAGAAATGATCCAAGAAGGAGAGCAACTTTTGAGGCTTTGATTGCCCAACTTGACGGCGAGAAGGAAACAACTGGTATTGATCGGTTCTCGCTTAGACAAGCTGTGATATTCATCTGTGCAACCAATAGGCCTGATGAGTTAGACCTAGAATTTGTTCGTTCTGGACGCATTGATCGTCGCTTGTACATAGGATTGCCAGATGCAAAACAGAGAGTGCAAATATTTGGTGTGCACAGTGCAGGAAAGCAACTTGCAGAGGACGTTGATTTTGGGAAGCTTGTCTACCGCACAGTTGGTTTTTCTGGAGCAGATGTACGGAATCTTGTCAATGAGGCGGCAATAATGTCGGTGAGGAAGGGACATTCTAGGATCAACCAACAAGACCTTGTTGATGTTTTAGACAAACAACTGCTTGAGGGTATGGGTGTACTTCTCACCGAAGAAGAGCAACAGAGATGTGAAGAAAGAGTGTCCGTAGAAAAAAGGAGACTGCTGGCTGTACATGAAGCTGGTCATATATTGTTAGCTCACTTGTTTCCTCGTTTTGATTGGCATGCCTTTTCTCAGCTTCTACCAGGGGGCAAGGAAACAGCAATTTCTGTTTTCTTCCCTCGAGAAGATATGGTTGGTCAAGGTTACACCACCTTCGGGTACTTGAAAATGCAAATGGTAGTTGCTCATGGAGGACGCTGTGCTGAACGTCTTATATTTGGTAATGACATAACTGATGGAGGAAAGGATGACCTAGAAAAGATAACGAAGATTGCTAGGGAGATGGTAATCAGTCCTCAGAATTCAAGACTTGGTCTTGCTGCCTTAACAAAGAAGTTTGGGATGACGGATCAACCAGATAATCCAGATGGCGAATTGATTAGATATAGGTGGGATGATCCACGAGTGACTCCTGTCAACATGACACTGGAATTGTCTGAGTTATTTTCACGGGAGTTGACAAGGTATATTGAAGAGACTGAAGAATTGGCGATGAACGGTTTGAGGGAAAACAGACACATACTGGATATGATTACCGAGGAGCTGCTGTATAAGTCTAGAATAACTGGATTGGAAGTTATAGAGAAAATGAAGGACCTGTCGCCATTCATGTTCGAGGACTTCATCAAGCCAATTCAGATAGACTTGGATGTGACATATACCCCGCACCGCTGCACAGATGTTGAAGGGGCTGTTTCTGTTCTTGGTGTTGCTTTGTTTGATGTTGGTGGATGCAGTCAAGAGCCAACAAAGGGAGGAGCTAAGCAGAGGCCCTTGCTTTATGCATAA 3060 42.12 MDVVTRYRPNQLLSPATPFLQQYQNVILFTLPAKRRANYSRQRAKLRVLGSADGNAADESPFGSFSRSVRRGSDRFWLNFGESIRKETGFDLKNTDGRLVEFFARANERLGNMGTELQRLKNETLPEFITWNRWDRWKDFKNWEPKRVGALFLYALVMIVSCQRIYMSVRAPFINRERLKLTEAYMEALIPEPSPNNIRKFKKGLWRKTMPKGLKIKKFIEGTDGTLVQDSSYVGEDAYDDSELLQDNVKKIIDSDEKIKGDEKENIKEQLEISGQKDSGTWRERLQTWKEILRKEKLTEAIDSLRAKYVVEFDMKEVEKSLRKDVVEKKTDTQGTRALWVSKRWWHYRPKLPYTYFLDKLDSSEVAAVVFTEDMKRLFVTMKEGFPLEYTVDIPLDPHLFEAITSSGVEVDLLQKRQIHYFLKVLIALLPGLLILWFIRESVMLLSITTKRLLYKKYQQLFDMEHTENFILPIGNVGETTSMHKEVVLGGDVWDLLDELMIYMQNPMQYYEKRVPFVRGVLLSGPPGTGKTLFARTLSKQSGLPFVYASGAEFTDSEKSGAARINEIFSIARRNAPSFVFVDEIDAIAGRHARNDPRRRATFEALIAQLDGEKETTGIDRFSLRQAVIFICATNRPDELDLEFVRSGRIDRRLYIGLPDAKQRVQIFGVHSAGKQLAEDVDFGKLVYRTVGFSGADVRNLVNEAAIMSVRKGHSRINQQDLVDVLDKQLLEGMGVLLTEEEQQRCEERVSVEKRRLLAVHEAGHILLAHLFPRFDWHAFSQLLPGGKETAISVFFPREDMVGQGYTTFGYLKMQMVVAHGGRCAERLIFGNDITDGGKDDLEKITKIAREMVISPQNSRLGLAALTKKFGMTDQPDNPDGELIRYRWDDPRVTPVNMTLELSELFSRELTRYIEETEELAMNGLRENRHILDMITEELLYKSRITGLEVIEKMKDLSPFMFEDFIKPIQIDLDVTYTPHRCTDVEGAVSVLGVALFDVGGCSQEPTKGGAKQRPLLYA* 1020
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14853980 14873435 - Chy11G196190.1 Chy11g01039 236800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01039 1019 Pfam AAA+ lid domain 680 722 IPR041569 -
Chy11g01039 1019 Gene3D - 660 733 - -
Chy11g01039 1019 SMART AAA_5 517 660 IPR003593 -
Chy11g01039 1019 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 12, CHLOROPLASTIC 7 977 - -
Chy11g01039 1019 Pfam Peptidase family M41 750 950 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Chy11g01039 1019 Coils Coil 103 123 - -
Chy11g01039 1019 Gene3D Peptidase M41 743 958 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Chy11g01039 1019 SUPERFAMILY FtsH protease domain-like 753 963 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Chy11g01039 1019 CDD AAA 519 658 - -
Chy11g01039 1019 PANTHER ATP-DEPENDENT PROTEASE 7 977 - -
Chy11g01039 1019 Gene3D - 478 659 IPR027417 -
Chy11g01039 1019 Pfam ATPase family associated with various cellular activities (AAA) 521 657 IPR003959 GO:0005524|GO:0016887
Chy11g01039 1019 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 484 728 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy11g01039 Chy-Chr11:14853980 Chy07g00378 Chy-Chr7:3044401 2.48E-80 dispersed
Chy11g01039 Chy-Chr11:14853980 Chy07g00246 Chy-Chr7:1949033 2.60E-56 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01039 K03798 - csv:101215439 1850.87