Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01041 ATGGCTTTCTCATCCTCCTTTGCTCGATCTACCGTTTCCTCTTCTCTGATCGAAGCTTCTCGTTCTGACTTTTCGCCGTCTGATTGCCGGAAGGCTTCATTCGTCGGGAGCTCTTTAAAGCTTCAATCTGGTCTTTTTGGAACTACTGTCTCGAGTGGGGCGTCTTCTTTACAGTTGAGGTCATCTAATAATCGAACTGTTCAACCCATCAACGCTACGGCCACTGAGGCGCCTCCAGCGATTCAAAAAACTCCGAGCAGTGGGAAGACCAAGATTGGAATCAATGGCTTTGGTCGAATTGGAAGACTGGTATTGCGAGTTGCAACCTCCAGAGATGATATTGATGTTGTAGCAGTTAATGATCCATTTGTTGATGCCAAGTACATGGTATGCAGAAGTTTAGCCCATCATCCATTTGAGCTCAAAGCTTACATGTTCAAATATGATTCTAGTCATGGTGTTTTCAACGGAACCATCAAGGTTCTCAATGATTCTACCTTGGAAATTAATGGGAAGCAGATCAAAGTTGTAAGCAAAAGGGACCCTGCAGATATCCCATGGGGTGATTATGGGGCTGAATACGTCGTTGAGTCCTCTGGAGTTTTCACTACAAAAGAAAAGGCTTCAGCACATTTGAAGGGTGGTGCTAAGAAAGTTGTAATCTCAGCTCCATCAGCTGATGCACCTATGTTTGTAGTTGGTGTTAATGAAAAAACTTACAAGCCGGCAATGGATATTGTTTCCAACGCAAGTTGTACTACCAATTGTCTTGCGCCTCTCGCAAAGGTTGTTCATGAGGAATTTGGCATTGTTGAAGGTCTAATGACTACAGTGCATGCAACAACAGCAACACAAAAGACTGTTGATGGCCCTTCAATGAAGGATTGGAGAGGGGGCCGTGGTGCTGCACAAAATATAATTCCTAGCTCTACTGGTGCTGCCAAGGCTGTTGGGAAGGTTCTTCCAGAGCTAAATGGAAAGCTTACTGGAATGGCTTTCCGTGTCCCAACACCCAATGTATCTGTTGTGGACTTAACTTGCCGACTTGAAAAGAGTGCTTCTTATGAAGATGTAAAGGCAGCAGTAAAGTATGCATCCGAAGGTCCATTGAAAGGCATTCTTGGATATACCGACGAGGATGTTGTGTCTACTGATTTTCTTGGTGACTCGAGGTCAAGTATTTTTGATGCAAAGGCTGGAATAGGTCTCAGTACCTCATTCATGAAGCTGGTGACTTGGTACGACAATGAATGGGGATACAGCAACCGAGTACTGGACCTTATCGAGCACATGGCAATGGTTTCAGCCTTAAACTAA 1317 44.42 MAFSSSFARSTVSSSLIEASRSDFSPSDCRKASFVGSSLKLQSGLFGTTVSSGASSLQLRSSNNRTVQPINATATEAPPAIQKTPSSGKTKIGINGFGRIGRLVLRVATSRDDIDVVAVNDPFVDAKYMVCRSLAHHPFELKAYMFKYDSSHGVFNGTIKVLNDSTLEINGKQIKVVSKRDPADIPWGDYGAEYVVESSGVFTTKEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPAMDIVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLEKSASYEDVKAAVKYASEGPLKGILGYTDEDVVSTDFLGDSRSSIFDAKAGIGLSTSFMKLVTWYDNEWGYSNRVLDLIEHMAMVSALN* 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14883645 14888004 + Chy11G196210.1 Chy11g01041 236802

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01041 438 Gene3D - 91 431 - -
Chy11g01041 438 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 330 347 IPR020831 GO:0016620
Chy11g01041 438 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 211 224 IPR020831 GO:0016620
Chy11g01041 438 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 370 385 IPR020831 GO:0016620
Chy11g01041 438 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 273 289 IPR020831 GO:0016620
Chy11g01041 438 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 246 264 IPR020831 GO:0016620
Chy11g01041 438 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 90 272 IPR036291 -
Chy11g01041 438 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 91 205 IPR020828 GO:0051287
Chy11g01041 438 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 250 257 IPR020830 GO:0016620
Chy11g01041 438 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 251 414 - -
Chy11g01041 438 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 23 436 IPR020831 GO:0016620
Chy11g01041 438 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 257 414 IPR020829 GO:0016620
Chy11g01041 438 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPCP1, CHLOROPLASTIC 23 436 - -
Chy11g01041 438 Gene3D Dihydrodipicolinate Reductase; domain 2 252 418 - -
Chy11g01041 438 SMART gp_dh_n_7 90 252 IPR020828 GO:0051287
Chy11g01041 438 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 91 426 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01041 K00134 GAPDH, gapA; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] - csv:101203472 802.742
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy11g01041 Chy-Chr11:14883645 Chy12g01188 Chy-Chr12:16699059 2.73E-171 dispersed
Chy03g00129 Chy-Chr3:1231325 Chy11g01041 Chy-Chr11:14883645 2.51E-166 transposed
Chy06g01434 Chy-Chr6:15285130 Chy11g01041 Chy-Chr11:14883645 6.79E-104 transposed
Chy07g00409 Chy-Chr7:3239184 Chy11g01041 Chy-Chr11:14883645 2.10E-112 transposed
Chy01g00855 Chy-Chr1:7496300 Chy11g01041 Chy-Chr11:14883645 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1147 Blo04g00463 Blo13g00601 . . . . . . . . . . . . Sed05g1836 Cpe04g00865 Cpe16g00709 Bhi05g01995 Tan02g0029 . Lac12g0041 Hepe02g0014 . . . . . . . . . . . . . . Csa07g01207 . Cme11g01634 . . . . Bpe15g00918 . . . Sed05g3308 . . . . . . Cpe15g00903 Cpe05g01033 Bhi10g00938 Tan05g0584 Cmetu11g0258 . Hepe08g0647 . . . . . . . . . . Csa06g01151 Chy11g01041 Cme01g01504
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002415 1 2 2 0 2 2 3 1 2 2 1 1 3 2 2 3 2 1 4 1 2 1 2 2 2 1 2 4 7 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01041 Chy_Chr11 FPKM 0.0 0.0 0.108225 0.0 0.0 0.0 0.0 0.294855 0.143745 0.075723