Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01041 ATGGCTTTCTCATCCTCCTTTGCTCGATCTACCGTTTCCTCTTCTCTGATCGAAGCTTCTCGTTCTGACTTTTCGCCGTCTGATTGCCGGAAGGCTTCATTCGTCGGGAGCTCTTTAAAGCTTCAATCTGGTCTTTTTGGAACTACTGTCTCGAGTGGGGCGTCTTCTTTACAGTTGAGGTCATCTAATAATCGAACTGTTCAACCCATCAACGCTACGGCCACTGAGGCGCCTCCAGCGATTCAAAAAACTCCGAGCAGTGGGAAGACCAAGATTGGAATCAATGGCTTTGGTCGAATTGGAAGACTGGTATTGCGAGTTGCAACCTCCAGAGATGATATTGATGTTGTAGCAGTTAATGATCCATTTGTTGATGCCAAGTACATGGTATGCAGAAGTTTAGCCCATCATCCATTTGAGCTCAAAGCTTACATGTTCAAATATGATTCTAGTCATGGTGTTTTCAACGGAACCATCAAGGTTCTCAATGATTCTACCTTGGAAATTAATGGGAAGCAGATCAAAGTTGTAAGCAAAAGGGACCCTGCAGATATCCCATGGGGTGATTATGGGGCTGAATACGTCGTTGAGTCCTCTGGAGTTTTCACTACAAAAGAAAAGGCTTCAGCACATTTGAAGGGTGGTGCTAAGAAAGTTGTAATCTCAGCTCCATCAGCTGATGCACCTATGTTTGTAGTTGGTGTTAATGAAAAAACTTACAAGCCGGCAATGGATATTGTTTCCAACGCAAGTTGTACTACCAATTGTCTTGCGCCTCTCGCAAAGGTTGTTCATGAGGAATTTGGCATTGTTGAAGGTCTAATGACTACAGTGCATGCAACAACAGCAACACAAAAGACTGTTGATGGCCCTTCAATGAAGGATTGGAGAGGGGGCCGTGGTGCTGCACAAAATATAATTCCTAGCTCTACTGGTGCTGCCAAGGCTGTTGGGAAGGTTCTTCCAGAGCTAAATGGAAAGCTTACTGGAATGGCTTTCCGTGTCCCAACACCCAATGTATCTGTTGTGGACTTAACTTGCCGACTTGAAAAGAGTGCTTCTTATGAAGATGTAAAGGCAGCAGTAAAGTATGCATCCGAAGGTCCATTGAAAGGCATTCTTGGATATACCGACGAGGATGTTGTGTCTACTGATTTTCTTGGTGACTCGAGGTCAAGTATTTTTGATGCAAAGGCTGGAATAGGTCTCAGTACCTCATTCATGAAGCTGGTGACTTGGTACGACAATGAATGGGGATACAGCAACCGAGTACTGGACCTTATCGAGCACATGGCAATGGTTTCAGCCTTAAACTAA 1317 44.42 MAFSSSFARSTVSSSLIEASRSDFSPSDCRKASFVGSSLKLQSGLFGTTVSSGASSLQLRSSNNRTVQPINATATEAPPAIQKTPSSGKTKIGINGFGRIGRLVLRVATSRDDIDVVAVNDPFVDAKYMVCRSLAHHPFELKAYMFKYDSSHGVFNGTIKVLNDSTLEINGKQIKVVSKRDPADIPWGDYGAEYVVESSGVFTTKEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPAMDIVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLEKSASYEDVKAAVKYASEGPLKGILGYTDEDVVSTDFLGDSRSSIFDAKAGIGLSTSFMKLVTWYDNEWGYSNRVLDLIEHMAMVSALN* 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14883645 14888004 + Chy11G196210.1 Chy11g01041 236802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01041 438 Gene3D - 91 431 - -
Chy11g01041 438 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 330 347 IPR020831 GO:0016620
Chy11g01041 438 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 211 224 IPR020831 GO:0016620
Chy11g01041 438 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 370 385 IPR020831 GO:0016620
Chy11g01041 438 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 273 289 IPR020831 GO:0016620
Chy11g01041 438 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 246 264 IPR020831 GO:0016620
Chy11g01041 438 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 90 272 IPR036291 -
Chy11g01041 438 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 91 205 IPR020828 GO:0051287
Chy11g01041 438 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 250 257 IPR020830 GO:0016620
Chy11g01041 438 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 251 414 - -
Chy11g01041 438 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 23 436 IPR020831 GO:0016620
Chy11g01041 438 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 257 414 IPR020829 GO:0016620
Chy11g01041 438 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPCP1, CHLOROPLASTIC 23 436 - -
Chy11g01041 438 Gene3D Dihydrodipicolinate Reductase; domain 2 252 418 - -
Chy11g01041 438 SMART gp_dh_n_7 90 252 IPR020828 GO:0051287
Chy11g01041 438 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 91 426 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy11g01041 Chy-Chr11:14883645 Chy12g01188 Chy-Chr12:16699059 2.73E-171 dispersed
Chy03g00129 Chy-Chr3:1231325 Chy11g01041 Chy-Chr11:14883645 2.51E-166 transposed
Chy06g01434 Chy-Chr6:15285130 Chy11g01041 Chy-Chr11:14883645 6.79E-104 transposed
Chy07g00409 Chy-Chr7:3239184 Chy11g01041 Chy-Chr11:14883645 2.10E-112 transposed
Chy01g00855 Chy-Chr1:7496300 Chy11g01041 Chy-Chr11:14883645 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01041 K00134 - csv:101203472 802.742