Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01042 ATGGCAGATAATCCTAGAACAGATTCCTTCAGAACAGAGCTTCTGTCCCCGGAGGGCGTGGCGGCTGGGACAGATGGAACGGTGAGGAAGGTGCCCTCGTGGCGACTCAATATGGATGAATTTCGGTTGCCTACTACAAACAAGAGGTCTCAACATGGCATTGTTTATTACTGGAAGTCATGGAACAGGCAGAGAAAGGTTGCTAAGTATTATGAAAGGCAGGAAAGTCTTCTCAAAGGATTTAATGAAGTTGATTCCTACAATGAACTGGGTATCCTGCCTGGAACTTTAACTGAGGATGAAAAGAAGCAAGAAGCAAATAGTGAGAGACAGGCAATATATATATCCAACGTAGCAAACATGTTGATCTTCATTGCAAAAGTTTACGCTTCGGTTGAGAGCAGATCACTAGCAGTAATAGCTTCAACACTAGATTCCCTGTTGGATCTTTTATCAGGGTTCATACTATGGTTTACAGCTAATGCTATGCGAAAGCCAAATCAGTATCGTTATCCTATCGGCAAAAATCGAATGCAACCAGTGGGAATTGTGGTGTTTGCATCAGTCATGGCAACTCTTGGAATACAAATATTGCTTGAATCAGCTCGAGAACTTATTTCAGAGGTTCAACCAGATAGAGATCCAGATAAAGTCAAATGGATGGTTGGAATAATGGCAGCCGTGACAGTAGTGAAATTTTGCCTTACAATATACTGTCGTAGATTCGCAAATGAAATCATCAGAGCCTATGCCCAAGATCATTTCTTTGATGTAATTACCAATTCAATTGGTCTTGCGACTGCCCTTTTGGCCATCAAATTCTACTGGTGGCTAGATCCCCTTGGGGCTATCCTACTTTCCAAGAAAATGGATCGGCGCTACAATGATTAA 891 42.09 MADNPRTDSFRTELLSPEGVAAGTDGTVRKVPSWRLNMDEFRLPTTNKRSQHGIVYYWKSWNRQRKVAKYYERQESLLKGFNEVDSYNELGILPGTLTEDEKKQEANSERQAIYISNVANMLIFIAKVYASVESRSLAVIASTLDSLLDLLSGFILWFTANAMRKPNQYRYPIGKNRMQPVGIVVFASVMATLGIQILLESARELISEVQPDRDPDKVKWMVGIMAAVTVVKFCLTIYCRRFANEIIRAYAQDHFFDVITNSIGLATALLAIKFYWWLDPLGAILLSKKMDRRYND* 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14890452 14892447 + Chy11G196220.1 Chy11g01042 236803

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01042 296 Gene3D Cation efflux protein transmembrane domain 109 288 IPR027469 -
Chy11g01042 296 MobiDBLite consensus disorder prediction 1 22 - -
Chy11g01042 296 Pfam Cation efflux family 114 286 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Chy11g01042 296 PANTHER CATION DIFFUSION FACILITATOR FAMILY TRANSPORTER 2 287 - -
Chy11g01042 296 SUPERFAMILY Cation efflux protein transmembrane domain-like 107 287 IPR027469 -
Chy11g01042 296 PANTHER MITOCHONDRIAL METAL TRANSPORTER 1-RELATED 2 287 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01042 - - - csv:101216157 553.903
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g00581 Chy-Chr10:12437913 Chy11g01042 Chy-Chr11:14890452 3.01E-87 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1151 Blo04g00461 . . . . . . . . . . . . . . . Cpe16g00708 . . . . . . . Cla02g01828 Cam02g1937 Cec02g1964 Cco02g2003 Clacu02g1917 Cmu02g1866 Cre02g2179 . . . . . . . Cme11g01635 . . . . Bpe15g00920 . Bma03g00494 . . . . . . . . . Cpe05g01032 Bhi10g00937 . . . . . . . . . . . . . . Csa06g01150 Chy11g01042 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005363 3 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01042 Chy_Chr11 FPKM 54.968727 53.326061 52.222134 50.287918 51.690453 66.882889 53.186729 37.052849 37.051514 39.571754