Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01044 ATGCAGCTCCTTCAATCCCGCTTGATAAATTTTCTATCAATTTCTTCTTCACCGGCCGCCTCCACAATCCAAGAAATTGCTTCTGCTTGCCCCAAAGGTTTGGCTAAGGTTGTGCTGAAGAAGGGGAAGGCGCAGCTTTTCAAAGATGGGAGTCCAATGGTGTACAGTGGAGCTGTTGATAGAATAATTGGAAGGCCACCACCAAAAACTGGAGATGTTGTCCTGGTAGCGGATGGGACTGAAAAACCTATAGGATGGGGTCTGTATAATTCAGTTTCTATGTTCTCTGTTAGATTGATGCAGTTGGAAGAAGAGGCAGCTAGAGACCCTTCCTGCACTTTAAATGTTGAGAAGATGATTGAAACGAGGGTACATACTGCTAGAGAATTACGAAAGAACTTGGGGCTTCCGTCAGCTAGTACTAATGCTTATCGTCTTGTTAATAGTGAAGGAGACAGATTGTCAGGGCTGATTATCGATGTCTTTGGAGATTTAGCAGTGGTAGCATCATCTGCTGCTTGGGTGGAGAAGTACAAAGCTGAAATAGAGGACTGTGTCCGTGGAATTGAAGAAATCAACCATGTGAAATGGAGACCATCGGTGGACATTCTGAAAGAAGAAGGTATAAATGTGTCTGAATTAAAGGATACAAGTCCGTCTACTTGTGCTGAAAGAACAAAGGTGACAGAGAATGACATTTTCTATGCCATCTCACTTGAAGGCCAGAAAACAGGTTTTTATGCTGATCAGCGTGAAAATCGTCATTTTATCTCAACAATTTCGGAGGGTCAGAAAGTTCTTGATCTCTGCTGCTACAGTGGTGGGTTTTCTCTAAATGCATTACGTGGTGGAGCTATTAATGTCACTGGTATTGATTCGTCATTGCCTGCACTGGAGCTAGCAAAAGAAAATGTGGTCCTTAATAGCATGGATCCGGAAAGAATATCATTTCTGAAAGCGGATGCCACAGCATTCATGAAGGATGCCCTATCTAGGAATGAATCTTGGGATATAGTCATTTTGGATCCTCCTAAACTAGCACCACGGAAAAAGGTTTTGCAAACTGCATCAGGTATGTACAGGAATTTAAATTCATTGGCAATGCAACTCACAAGAAAAGGTGGTTTTCTCATGACTTGTTCATGTTCTGGAGCAATGACACAAAGTGGGATGTTCTTGCAAATACTTCAGGGTGCAGCATCAACGGCTAAAAAGAAAATTACGGTTCTACGACAAGCAGGAGCAGCATGTGATCACCCAATCGACCCTACTTATCCAGAGGGTGCTTATCTTTCTAACATTCTTCTACGAGTGCTATGA 1320 42.58 MQLLQSRLINFLSISSSPAASTIQEIASACPKGLAKVVLKKGKAQLFKDGSPMVYSGAVDRIIGRPPPKTGDVVLVADGTEKPIGWGLYNSVSMFSVRLMQLEEEAARDPSCTLNVEKMIETRVHTARELRKNLGLPSASTNAYRLVNSEGDRLSGLIIDVFGDLAVVASSAAWVEKYKAEIEDCVRGIEEINHVKWRPSVDILKEEGINVSELKDTSPSTCAERTKVTENDIFYAISLEGQKTGFYADQRENRHFISTISEGQKVLDLCCYSGGFSLNALRGGAINVTGIDSSLPALELAKENVVLNSMDPERISFLKADATAFMKDALSRNESWDIVILDPPKLAPRKKVLQTASGMYRNLNSLAMQLTRKGGFLMTCSCSGAMTQSGMFLQILQGAASTAKKKITVLRQAGAACDHPIDPTYPEGAYLSNILLRVL* 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14898237 14902278 + Chy11G196240.1 Chy11g01044 236805

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01044 439 CDD AdoMet_MTases 265 380 - -
Chy11g01044 439 ProSiteProfiles PUA domain profile. 34 90 - -
Chy11g01044 439 Pfam S-adenosylmethionine-dependent methyltransferase 223 393 IPR019614 GO:0008168
Chy11g01044 439 Gene3D Vaccinia Virus protein VP39 226 439 IPR029063 -
Chy11g01044 439 Gene3D PUA domain 34 105 IPR036974 GO:0003723
Chy11g01044 439 Pfam PUA-like domain 37 100 IPR041532 -
Chy11g01044 439 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 123 434 IPR029063 -
Chy11g01044 439 CDD RlmI_M_like 120 209 - -
Chy11g01044 439 SMART pua_5 35 115 IPR002478 GO:0003723
Chy11g01044 439 PANTHER RIBOSOMAL RNA LARGE SUBUNIT METHYLTRANSFERASE 19 439 - -
Chy11g01044 439 Gene3D RNA methyltransferase domain (HRMD) like 116 216 - -
Chy11g01044 439 SUPERFAMILY PUA domain-like 36 104 IPR015947 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01044 - - - csv:101215914 837.41
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1166 . . . . . . . . . . . . . . . . Cpe16g00706 . . . . . . . Cla02g01830 Cam02g1939 Cec02g1966 Cco02g2005 Clacu02g1919 Cmu02g1868 Cre02g2181 . . . . . . . Cme11g01637 . . . . . . . . . . . . . . . . . Bhi10g00931 . . . . . . . . . . . . . . Csa06g01148 Chy11g01044 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010611 1 3 1 0 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01044 Chy_Chr11 FPKM 1.567807 1.495758 0.0 0.0 1.749656 1.851974 1.965958 0.000551 0.0 0.0