Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01046 ATGATCACGACGGTCACAGCTAGAGTAATCACAACAGCTCGATCATTGGTTCCATCCAGCCAGCTCTCTCTTCTACGTCCGTCTTCTTATGTCTTCGCTGCCCAGAAATCTCACTCCCACACCCTTCTCATTCGTCAGATGAGCTCGGAGGCGCAGAGCATCACTACTCGTCTTCACAGTTCTGGATTATTACGAAGCCAAGGTCTCATTGGAGGGAAGTGGATTGATGCTTATGATGGGAAGACCCTTAAGGTTCAAAATCCAGCTAATGGTGAAGTTATAACCAATGTTCCGCTCATGGGCAAAAGGGAGACCGATGATGCTATTTCATCAGCTTATGATGCTTTTAAGTCTTGGAGCAAGCTCACTGCAGCTGATCGGAGTAATCGACTACGCAAATGGTATGAGCTCCTAATGGCCCACAAAGAAGAGCTTGGACAACTGATAACCTTAGAGCAAGGAAAGCCCTTAAAGGAAGCTTTGGGTGAGACTAATTATGGAGCCAGCTTTATTGAGTTCTTTTCCGAAGAAGCAAAGCGAGTATACGGTGACATAATCTCACCAACTATAGCTGATCGTCGACTTTTGGTCTTGAAGCAGCCAGTTGGAGTTGTTGGCATCATTACCCCTTGGAACTTTCCGCTGGCTATGATTACACGGAAGGTTGGACCTGCTCTTGCAAGTGGTTGTACGGTGGTCATAAAACCCTCTGAGCTTACCCCCTTGACAGCTTTGGCAGCAGCTGAGCTCTCACTTCAAGCTGGAATTCCCCCGGGTGTCGTGAATGTGGTTATGGGAGATGCTCCTGCTATTGGGGATGCTATACTTGCAAGTTCTCAGGTAAGAAAGATCACGTTTACCGGCTCAACTGCAGTTGGAAAAAAGTTGATGGCAGGTGCTGCTGGAACTGTTAAAAGGGTGTCCTTTGAACTTGGTGGTAATGCCCCCTGCATAATATTTGACGATGCAGATGTGGATGTTGCAGTAAAAGGATCTATTGCAGCAAAGTTCCGAAATAGTGGACAGACTTGTGTTTGTGCCAATAGAATTCTTGTTCAAGAAGGAATATACGAGAAATTTACAAATGCTTTCTCAAAAGCGGTGCAAAATCTGCAAGTTGGAGACGGGTTTGGTGAAGGTGTAGCTCAGGGTCCTTTAATTAATGAAGCTGCCGTACAGAAGGTTGAGAAATTTCTTCAAGATGCCACTACAAAGGGAGCGAAAGTTCTTCTTGGTGGTAAAAGACACAGCCTTGGGATGACATTTTTTGAGCCTACAGTTGTTGCTGGCGTGAAAAGTGACATGCTTTTATCCAGGGAGGAAGTATTTGGTCCCGTGGCACCATTACTGCCATTCAGAACAGAGGAGGAAGCAATTGCTCTCGCAAACGACACCAATGCAGGATTAGCTGCTTACATATTCACAAATAATATTCAGCGTTCGTGGAGAGTGACTGAAGCTCTCGAATATGGAATGGTCGGTGTTAATGAAGGCCTAATTTCTACAGAGGTGGCTCCATTTGGGGGTGTTAAACAGTCAGGCCTTGGTAGGGAGGGGTCGAAATATGGGATGGACGAATATCTTGAGAAACATGTATGGACATCCATATTTTATTGA 1617 45.52 MITTVTARVITTARSLVPSSQLSLLRPSSYVFAAQKSHSHTLLIRQMSSEAQSITTRLHSSGLLRSQGLIGGKWIDAYDGKTLKVQNPANGEVITNVPLMGKRETDDAISSAYDAFKSWSKLTAADRSNRLRKWYELLMAHKEELGQLITLEQGKPLKEALGETNYGASFIEFFSEEAKRVYGDIISPTIADRRLLVLKQPVGVVGIITPWNFPLAMITRKVGPALASGCTVVIKPSELTPLTALAAAELSLQAGIPPGVVNVVMGDAPAIGDAILASSQVRKITFTGSTAVGKKLMAGAAGTVKRVSFELGGNAPCIIFDDADVDVAVKGSIAAKFRNSGQTCVCANRILVQEGIYEKFTNAFSKAVQNLQVGDGFGEGVAQGPLINEAAVQKVEKFLQDATTKGAKVLLGGKRHSLGMTFFEPTVVAGVKSDMLLSREEVFGPVAPLLPFRTEEEAIALANDTNAGLAAYIFTNNIQRSWRVTEALEYGMVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEYLEKHVWTSIFY* 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14923094 14948806 + Chy11G196260.1 Chy11g01046 236807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01046 538 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 337 348 IPR016160 GO:0016491
Chy11g01046 538 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 313 502 IPR016163 GO:0016620
Chy11g01046 538 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 80 527 IPR016162 GO:0016491
Chy11g01046 538 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 61 530 - -
Chy11g01046 538 SUPERFAMILY ALDH-like 45 531 IPR016161 GO:0016491
Chy11g01046 538 Pfam Aldehyde dehydrogenase family 74 529 IPR015590 GO:0016491
Chy11g01046 538 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 309 316 IPR029510 GO:0016491
Chy11g01046 538 CDD ALDH_F5_SSADH_GabD 85 529 - -
Chy11g01046 538 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 61 530 - -
Chy11g01046 538 TIGRFAM SSADH: succinate-semialdehyde dehydrogenase 85 529 IPR010102 GO:0009013|GO:0009450
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02162 Chy-Chr1:26249458 Chy11g01046 Chy-Chr11:14923094 3.54E-63 dispersed
Chy02g00769 Chy-Chr2:4759868 Chy11g01046 Chy-Chr11:14923094 5.94E-52 dispersed
Chy02g02570 Chy-Chr2:28916466 Chy11g01046 Chy-Chr11:14923094 6.88E-110 dispersed
Chy05g01239 Chy-Chr5:16782046 Chy11g01046 Chy-Chr11:14923094 1.83E-59 dispersed
Chy11g01046 Chy-Chr11:14923094 Chy11g01565 Chy-Chr11:22174285 4.12E-51 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01046 K17761 - csv:101217352 984.556