Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01047 ATGTACCATGCCACCAAGAAACCTTCCTCTATGACTTCTCATGACAGGCCAATGTGTGTTCAAGGCGATTCCGGTCTCGTCCTCACCACCGACCCCAAACCCCGTCTCCGTTGGACCGTCGAGCTCCACGAGCGCTTTGTCGACGCTGTCACTCAACTTGGTGGCCCTGATAAAGCTACCCCTAAGACCATCATGCGGGTTATGGGTGTCAAGGGTCTCACTCTCTACCATCTCAAAAGTCATCTTCAGAAGTTCAGACTTGGAAAGCAACCTCACAAGGAATTCAATGATCAATCAATAAAGGATGGTATAAGAGCTTCAGCCTTGGAACTTCAGAGAAACAGTGGATCTTCTTCCACCTTAATGGACCGTAGTATGAACGAAATGCATATGGAGGTCCAGAGACGACTGCATGAACAAATTGAGGTACAAAGGCACCTTCAATTGAGAATTGAGGCTCAAGGCAAATACATGCAAAGTATACTGGAGAAAGCTTGCCAAACTCTCGCCGGCGAAAATATGGCCGCAGTCACCGCCGCCTCCGCCGGACCTTTCAAAACTACTTCCAACAATATGGGAACAACCACCAACCTTGTCTCAGACGCCGCCATCAAAGACTTCATTTCACCTCACCACACCTTCCCTCCTTTTCAAGACATGAACAACCTATTTAACTCTGACCCGCCACCACCTCCGCCGCCTCTCATTGACTGCCTCAAAAAGCCCAGCCCCTTCATCTCTGGGGCCGGTAAGACCCCCATTTTCTGGCCAGACGATCTCCGGCTCCAAGACTTAGGAACTCCTTCTGCCACCTTAGCACCCGCGCCCCCTCCCATCGGTGGCCCACCCGACTTGGATTCTCTACAGTTGGAAATGTATGAATCCAAACCGCCACCACCAACACCGCTACTCGCTGTTGGCAACAGCGCCATGAATGAGAAGAAGTTTGACATGACGTTAAAGCTCGAGAGACCATCCCCACCGCGATCGGGACATTCGGATGAAAGGGTGAATAATAATAATAATAATGGTATGGCTAACAATAACAACCCTACAATGTCACAGCCACAGGGAAGAAATTCTTCATTTGGTTAA 1095 49.59 MYHATKKPSSMTSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDQSIKDGIRASALELQRNSGSSSTLMDRSMNEMHMEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAAVTAASAGPFKTTSNNMGTTTNLVSDAAIKDFISPHHTFPPFQDMNNLFNSDPPPPPPPLIDCLKKPSPFISGAGKTPIFWPDDLRLQDLGTPSATLAPAPPPIGGPPDLDSLQLEMYESKPPPPTPLLAVGNSAMNEKKFDMTLKLERPSPPRSGHSDERVNNNNNNGMANNNNPTMSQPQGRNSSFG* 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14949199 14952274 + Chy11G196270.1 Chy11g01047 236808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01047 364 MobiDBLite consensus disorder prediction 250 364 - -
Chy11g01047 364 Pfam Myb-like DNA-binding domain 36 84 IPR001005 -
Chy11g01047 364 Pfam MYB-CC type transfactor, LHEQLE motif 129 168 IPR025756 -
Chy11g01047 364 SUPERFAMILY Homeodomain-like 32 88 IPR009057 -
Chy11g01047 364 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 33 88 IPR006447 GO:0003677
Chy11g01047 364 Gene3D - 32 90 - -
Chy11g01047 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 90 IPR017930 -
Chy11g01047 364 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 2 226 IPR044848 GO:0003700
Chy11g01047 364 MobiDBLite consensus disorder prediction 332 364 - -
Chy11g01047 364 MobiDBLite consensus disorder prediction 316 331 - -
Chy11g01047 364 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 2 226 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00365 Chy-Chr6:2434197 Chy11g01047 Chy-Chr11:14949199 4.30E-70 dispersed
Chy11g01047 Chy-Chr11:14949199 Chy02g01741 Chy-Chr2:18297676 7.64E-34 dispersed
Chy04g00796 Chy-Chr4:10249813 Chy11g01047 Chy-Chr11:14949199 4.24E-50 transposed
Chy04g01368 Chy-Chr4:20330154 Chy11g01047 Chy-Chr11:14949199 5.38E-59 transposed
Chy05g00677 Chy-Chr5:8623909 Chy11g01047 Chy-Chr11:14949199 2.78E-25 transposed
Chy08g00372 Chy-Chr8:8874263 Chy11g01047 Chy-Chr11:14949199 1.54E-31 transposed
Chy01g00844 Chy-Chr1:7393449 Chy11g01047 Chy-Chr11:14949199 1.16E-125 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18735 PF00249 Myb_DNA-binding 2.00E-06 CL0123 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01047 - - csv:101203721 687.567