Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01051 ATGGGTAGCCGGGTCAGCTCGTCGGCTAAACGGAGCGACGGCGGTGTAAAGACCGGAAAAACGGGTGGCGTAGGGAAAGAAGCGTCGGTTAGGAAGGGTGACAGCGGCGTGGGAGGAAGTAGTCGTGGGAAGTCGTTGTGGCGGCCTGAGAAGAAGGTTTATTTTCCGAAGAAATATGGTTTCATAGCAGATAACTTCTCCTCTGTTGACCAGGTTACCTCCGCATTGAGGAAAGAAGGACTAGAATCGTCGAACCTCATCGTCGGAATTGATTTCACCAAAAGCAACGAATGGACAGGTGCAGTATCGTTCAATAAACGGAGCTTGCACGCTCTTTCCGATTCTCCTAATCCCTACCAGAAGGCTCTGTCCATCATCGGGAAAACTCTGGCTCCCTTCGATGAAGACGGCTTAATTCCTTGCTTCGGTTTCGGTGACGCTACGACGCACGATCAATTGGTGTTCAGTTTTCACAATGACAATTCACCATGCCATGGATTTGAAGAAGTTCTTGACTGTTACAAAAACATAATTCCCAATGCTCAACTTTCAGGACCAACTTCTTATGGTCCTGTTGTTGAAGCTGCAATGGATATTGTGGAGAAGAGTGGTGGGCAATTTCATATTCTTCTCATCGTTGCTGATGGACAGGTTACTCGAAGCTCCCTTGTTGGCGATGGTGAATTGAGCGTTCAAGAGGAGAAAACAATCAAAGCAATTGTCGATGCAAGTGCATATCCTCTTTCAATCATTCTTGTTGGAGTTGGAGATGGTCCTTGGGACGACATGAAGAAGTTTGACGACAAGATTCCAGCTCGGGATTTTGATAATTTCCAGTTTGTTAACTTCACTGAAATAATGTCGAAAAATATTGGCGTGGCGGAAAAAGAAGCAGCTTTTGCTTTAGCTGCATTAATGGAGGTTCCTTTCCAGTACAAAGCAGTCACAGAAATGGGTCTTATGGGACGCGTGACAGGGAAAACAACACATATTGTGCCACGACCCCCACCGACATGTTATACTCGTTCTACACGACTTACTTCTATACCAAGCAACACCTCCTCAGCTTCTGCATCTGATGAACATAGTCAGGTCTGCCCCATTTGCTTGACCGCGGGAAAGGACTTGGCCTTTGGATGCGGCCACATGGTTGAGAAACTGAACTATTTAATATCTACAAAACAGTTCTTTATTCACTACTTCAAAGACGTCACCTGCATACTTGTAGGGAATGTGGATCAAGATTGTCCAATTGCCATATATGTCGCCAGCCTATCAGAAACCGAATAA 1290 45.74 MGSRVSSSAKRSDGGVKTGKTGGVGKEASVRKGDSGVGGSSRGKSLWRPEKKVYFPKKYGFIADNFSSVDQVTSALRKEGLESSNLIVGIDFTKSNEWTGAVSFNKRSLHALSDSPNPYQKALSIIGKTLAPFDEDGLIPCFGFGDATTHDQLVFSFHNDNSPCHGFEEVLDCYKNIIPNAQLSGPTSYGPVVEAAMDIVEKSGGQFHILLIVADGQVTRSSLVGDGELSVQEEKTIKAIVDASAYPLSIILVGVGDGPWDDMKKFDDKIPARDFDNFQFVNFTEIMSKNIGVAEKEAAFALAALMEVPFQYKAVTEMGLMGRVTGKTTHIVPRPPPTCYTRSTRLTSIPSNTSSASASDEHSQVCPICLTAGKDLAFGCGHMVEKLNYLISTKQFFIHYFKDVTCILVGNVDQDCPIAIYVASLSETE* 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14999918 15006051 - Chy11G196310.1 Chy11g01051 236812

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01051 429 Pfam Copine 108 321 IPR010734 -
Chy11g01051 429 PANTHER COPINE FAMILY PROTEIN 1 43 384 - -
Chy11g01051 429 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RGLG4 43 384 - -
Chy11g01051 429 SMART VWA_4 83 286 IPR002035 -
Chy11g01051 429 SUPERFAMILY vWA-like 85 266 IPR036465 -
Chy11g01051 429 MobiDBLite consensus disorder prediction 1 45 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01051 K16280 RGLG; E3 ubiquitin-protein ligase RGLG [EC:2.3.2.27] - csv:101218058 709.523
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g00832 Chy-Chr10:14255706 Chy11g01051 Chy-Chr11:14999918 1.08E-143 dispersed
Chy11g01051 Chy-Chr11:14999918 Chy06g00005 Chy-Chr6:22450 1.42E-19 dispersed
Chy11g01051 Chy-Chr11:14999918 Chy02g02625 Chy-Chr2:29377124 6.05E-148 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1179 . . . . Bpe07g00480 . . . . . . . . . . . . . . . . . . . Cla02g01840 Cam02g1946 Cec02g1973 Cco02g2012 . . Cre02g2188 . . . . . . . Cme11g01654 . . . . . . . . Sed05g3319 . . . . . . . Cpe05g01024 Bhi10g00922 Tan05g0573 Cmetu11g1928 . Hepe08g0658 . . . . . . . . . . Csa06g01141 Chy11g01051 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002870 1 4 2 0 1 1 1 2 2 2 1 1 3 2 2 3 1 3 3 2 2 2 1 2 2 2 2 2 2 1 55
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01051 Chy_Chr11 FPKM 1.140819 1.667695 1.447665 1.256313 1.94658 2.237168 2.027346 1.475446 1.397318 1.535385