Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01152 ATGCAGCTCTTCCTTCACCGCTCTACTTTCCGCCTCATTACAGCTTTCTTCTCTGCTGCACCTTTGCTCCACTGGTTCACCGCGGCGGCTCAGCTCCAACACCCTCTGCCGGATCTACATTGGCTTCCAGCCACCGCCACTTGGTACGGAACCCCCGAGGGAGACGGTAGCGACGGTGGAGCATGTGGGTATGGTAATTTAGTGGATGTGAAGCCTTTAAAGGCTAGAGTTGGGGCTGTGAGTCCTGTTTTGTTCAGAAATGGTGAAGGTTGTGGAGCTTGTTACAAAGTGAAGTGTTTAGACCACAACATTTGCTCTAGACGAGCAGTGACTATAATCGTCACCGACGAGTGCCCCGGTGGGTATTGTTCCAATGGCAATACTCACTTCGATCTCAGCGGCGCCGCCTTTGGTCGTATGGCCATTGCCGGAGAAGGTGGGCAGCTCAGAAACCGAGGGGAAATCCCAGTAATTTACCGACGAACTCCGTGTAAGTACCCAGGCAAGAACATTGCCTTCCATGTCAATGAAGGCTCGACAGATTACTGGCTCTCACTCTTGGTTGAATTCGAGGATGGGGATGGAGACATTGGTGCAATGCAAATAAAAGAAACAAATTCAGGGGAGTGGCTGGATATGAACCATCTATGGGGAGCAAATTGGTGCATAATTGGTGGGCCATTAAAGGGCCCATTCTCAGTGAGATTAACAACATTATCTACGGGAAGAACTCTCTCAGCAAGAGATATAATCCCAAGGAATTGGTCTCCAAAAGCCACTTACACTTCACGCCTTAAATTCTTCACTTAA 810 49.38 MQLFLHRSTFRLITAFFSAAPLLHWFTAAAQLQHPLPDLHWLPATATWYGTPEGDGSDGGACGYGNLVDVKPLKARVGAVSPVLFRNGEGCGACYKVKCLDHNICSRRAVTIIVTDECPGGYCSNGNTHFDLSGAAFGRMAIAGEGGQLRNRGEIPVIYRRTPCKYPGKNIAFHVNEGSTDYWLSLLVEFEDGDGDIGAMQIKETNSGEWLDMNHLWGANWCIIGGPLKGPFSVRLTTLSTGRTLSARDIIPRNWSPKATYTSRLKFFT* 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 17431592 17433018 + Chy11G197320.1 Chy11g01152 236913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01152 269 Gene3D - 29 164 IPR036908 -
Chy11g01152 269 SUPERFAMILY Barwin-like endoglucanases 40 168 IPR036908 -
Chy11g01152 269 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 182 263 IPR007117 -
Chy11g01152 269 SMART dpbb_1 77 159 IPR007112 -
Chy11g01152 269 PANTHER EXPANSIN-LIKE PROTEIN B1 14 268 - -
Chy11g01152 269 PANTHER EXPANSIN-B3 14 268 - -
Chy11g01152 269 Pfam Lytic transglycolase 79 158 IPR009009 -
Chy11g01152 269 SUPERFAMILY PHL pollen allergen 169 263 IPR036749 -
Chy11g01152 269 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 59 169 IPR007112 -
Chy11g01152 269 PRINTS Major pollen allergen Lol pI signature 141 156 IPR005795 GO:0005576|GO:0019953
Chy11g01152 269 PRINTS Major pollen allergen Lol pI signature 119 134 IPR005795 GO:0005576|GO:0019953
Chy11g01152 269 PRINTS Major pollen allergen Lol pI signature 79 90 IPR005795 GO:0005576|GO:0019953
Chy11g01152 269 PRINTS Major pollen allergen Lol pI signature 189 204 IPR005795 GO:0005576|GO:0019953
Chy11g01152 269 PRINTS Major pollen allergen Lol pI signature 173 188 IPR005795 GO:0005576|GO:0019953
Chy11g01152 269 PRINTS Major pollen allergen Lol pI signature 239 256 IPR005795 GO:0005576|GO:0019953
Chy11g01152 269 Pfam Expansin C-terminal domain 171 252 IPR007117 -
Chy11g01152 269 Gene3D - 165 264 IPR036749 -
Chy11g01152 269 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576
Chy11g01152 269 PRINTS Expansin/Lol pI family signature 210 224 IPR007118 GO:0005576
Chy11g01152 269 PRINTS Expansin/Lol pI family signature 40 55 IPR007118 GO:0005576
Chy11g01152 269 PRINTS Expansin/Lol pI family signature 81 99 IPR007118 GO:0005576
Chy11g01152 269 PRINTS Expansin/Lol pI family signature 249 263 IPR007118 GO:0005576
Chy11g01152 269 PRINTS Expansin/Lol pI family signature 58 76 IPR007118 GO:0005576
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy01g00353 Chy11g01152 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00035 Chy-Chr6:263379 Chy11g01152 Chy-Chr11:17431592 1.34E-68 dispersed
Chy11g01152 Chy-Chr11:17431592 Chy05g00682 Chy-Chr5:8773611 1.50E-37 dispersed
Chy04g00026 Chy-Chr4:273417 Chy11g01152 Chy-Chr11:17431592 2.27E-32 transposed
Chy04g00051 Chy-Chr4:565264 Chy11g01152 Chy-Chr11:17431592 2.54E-29 transposed
Chy01g00353 Chy-Chr1:2560711 Chy11g01152 Chy-Chr11:17431592 2.72E-147 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01152 K20628 - csv:101202998 544.273