Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01222 ATGGCCACTCCATTTTCTCTCTGCATTCCCCTCCTTCTCTCATTTTCCCTCCTAATCGAAGCCAGAATCCCCGGAGTTTACTCCGGCGGCCCATGGCAGAGTGCCCACGCCACTTTCTACGGCGGCTCCGACGCTTCCGGCACAATGGGTGGAGCTTGTGGGTACGGGAATTTGTACAGCCAAGGCTATGGCGTTAACACCGCGGCGCTTAGTACTGCGCTCTTCAACAAGGGTCAGAGCTGCGGCGCTTGCTTTGAAATTAAGTGCGCTAATGATCCAAGATGGTGCCATTCTGGTAGCCCGTCGATATTGATTACTGCTACTAATTTCTGCCCGCCGAACTATGCTCTTCCGAACGATAATGGCGGCTGGTGTAATCCCCCGAGGTCTCATTTTGACCTCGCTATGCCTATGTTCCTTAAAATCGCTGAGTACCGCGCCGGAATCGTCCCCGTCTCTTACCGCCGAGTACCATGCCGTAAGCAAGGAGGAATCCGGTTCACCATCAACGGGTTTCGTTACTTCAATCTGGTTCTAATAACGAACGTGGCAGGGGCAGGGGATATCGTGAGGGTGAGTGTGAAAGGAACAAGAACCGGTTGGATGAGTTTAACAAGAAACTGGGGACAGAATTGGCAATCCAACGCCGTATTGGTGGGTCAGGCTCTTTCTTTTAGAGTTACCGGCAGCGACCGACGAACCTCAACATCGTGGAACATTGTCCCCGCTCATTGGCAGTTCGGCCAAACTTTCACCGGAAAGAACTTCCGTGTGTAA 777 52.64 MATPFSLCIPLLLSFSLLIEARIPGVYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPNDNGGWCNPPRSHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGTRTGWMSLTRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNIVPAHWQFGQTFTGKNFRV* 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 18396907 18397941 + Chy11G198020.1 Chy11g01222 236983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01222 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Chy11g01222 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Chy11g01222 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Chy11g01222 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Chy11g01222 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Chy11g01222 258 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Chy11g01222 258 Gene3D - 21 160 IPR036908 -
Chy11g01222 258 PANTHER EXPANSIN 7 257 - -
Chy11g01222 258 PANTHER EXPANSIN-A15 7 257 IPR002963 GO:0009664
Chy11g01222 258 Pfam Lytic transglycolase 67 154 IPR009009 -
Chy11g01222 258 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Chy11g01222 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Chy11g01222 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Chy11g01222 258 Gene3D - 164 256 IPR036749 -
Chy11g01222 258 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Chy11g01222 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Chy11g01222 258 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Chy11g01222 258 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Chy11g01222 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Chy11g01222 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Chy11g01222 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Chy11g01222 258 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Chy11g01222 258 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Chy11g01222 258 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
Chy11g01222 258 SMART dpbb_1 67 154 IPR007112 -
Chy11g01222 258 SUPERFAMILY PHL pollen allergen 161 253 IPR036749 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy11g01222 Chy12g00201 CCT
Chy11g01222 Chy12g00201 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00885 Chy-Chr8:16259905 Chy11g01222 Chy-Chr11:18396907 2.90E-77 dispersed
Chy10g01014 Chy-Chr10:15516342 Chy11g01222 Chy-Chr11:18396907 1.46E-125 dispersed
Chy01g00568 Chy-Chr1:4083549 Chy11g01222 Chy-Chr11:18396907 1.93E-91 transposed
Chy09g00397 Chy-Chr9:3497307 Chy11g01222 Chy-Chr11:18396907 2.55E-155 transposed
Chy10g00538 Chy-Chr10:11972620 Chy11g01222 Chy-Chr11:18396907 2.41E-170 wgd
Chy11g01222 Chy-Chr11:18396907 Chy12g00201 Chy-Chr12:2415956 3.81E-168 wgd
Chy11g01222 Chy-Chr11:18396907 Chy08g00748 Chy-Chr8:15209147 3.18E-146 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01222 - - csv:101203979 526.168