Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy11g01242 | ATGGAGGGAGGTAACAATGGCGGCTCCTTTCGGAGTTTGATCGACTTGGTGAACGATGTTGCTTCAATCTCTGACTTCAGGTACGCGGTCAGAAAGCAGTATTGTAATTTAGCTAGGCGGCTGAAGCTGTTGATCCCAATGTTTGAAGAGATGAGGGATATGAAGCAACCGCTGCCGGATGATACCGTTCAAGCTCTTGCTTCGTTGAAAGAAGCTCTGGAATCGACTAAGGAGTTGCTTAGACATGGGAGCGAGGGGAGCAAGATTTATCTGGCCTTGGAGAGAGAGCAAATTTTGAATCAATTTCACAAGGTGACAGCAAGACTGGAGCAAGCTCTGAATGAAATTTCACATGAAGCTCTTGACATATCTGATGAAGTCAAGGAGCAGGTTGACCTTGTTCTCTCTCAATTCAAAAGGGCTAGAGAAAGGAAGGATACACAAGATGCTGAGCTGTATGTTAACCTGAACTCTCTCTATAACAACAGAGATGTTGCTACTGATCCTTTTGTCTTGAAAGGATTGGCTGAGAAGTTGCAATTGATGGATATAGCTGATCTTACTCAAGAATCTCTTGCTTTACATGAAATGGTTTCGGCTAGTGATGGAGATCCAGGAGGGAGATTTGAGAAAATGTCAATACTATTGAAGAGAATAAAAGATTTTATGCTAACTGAAAACCCTGAATTTGGTGTTTCTTCAAAAGAACAGAGTCATCCTCGCACTGGTGGACAAGCGTCTGCTGGTAAGAAAGATATATCGTCCCTTCACATACCTGAGGACTTTCGATGCCCCATATCCCTGGATTTGATGAAAGATCCCGTCATTGTCTCTACAGGACAGTTCCTGAATACATCAAATAATTTTCCTGGAGAATTGAGAGGCCAAGATATGATGCTGCATCGAGGATTGACCTATGAACGTGGTTTCATTGAGAAGTGGCTGGCAGATGGACACATGACATGCCCAAAAACTCAACAAGTTCTCACTAGCAAAATTCTTACACCAAATTATGTTTTACGTAGTCTCATAGCTCAATGGTGCGAGGCCAATGGGATCAAACCACCACAACGTGCCAGCAGTTCTCAGCCGAGTGAGTTGACTCCGGCTGAACGCTCTAAGTATGAAGCTCTACTCCACAAACTCACATCAGGTAACATTGAAGACAAGCGATCTGCTGCTGGTGAGATTCGCCTTCTAGCCAAACGCAATGCAAATAATCGTGTAGCCATTGCTGAAGCTGGTGCAATTCCTCTTCTTGTTGATCTCCTTTCAACAACAGACCCCCTCATTCAAGAACATGCTGTGACAGCATTACTTAACCTATCAATTTGTGACAATAACAAGAGAAGCATCATGTCCTGTAGGGCTGCGCCTGGCATAGTCCATGTGCTGAAGTGGGGGAGTATGGAAGCACGTGAAAATGCTGCTGCCACTCTTTTCAGTCTCTCTGTTGTAGACGAATATAAAATAATGATTGGCGCATCGGGAGCCATTCTGCCACTTATTGCATTACTTAATGAAGGTACTCAAAGGGGGAAGAAGGATGCTGCAACCGCTCTATTCAACTTGTGTTTCTTCCAAGGGAACAAGATAAAGGCAGTCAGGGGTGGTGTTGTTTCCATACTAATGCAGCTGTTGACAGAATCTAGAATAGGGATGGTAGATGAGGCCCTTGCAATATTAGCCATACTGGCCAGCAATTCCGAAGGACGAGCCGCTATTGGAGCAGCCGAATCTGTCCCCATTTTAGTAAATCTCATTGGAACAGGATCCCCTAGGAATAGGGAAAATGCAGCTGCAGTTTTGGTGCATCTTTGCCTGGGAGACAAACGACATCTTGTTGAAGCAAAGGAGCTTGGAGCGATTGGTTTGCTTGTGGATATGGCAGAAAATGGAACAGACCGAGGTAAGCGAAAAGCAACACAATTGCTTGACCAAATAAACAGGTTTACAGAGCTGCAGAAAGAGGCTGAGGTTCAATCTCAGTCTCAATCCCAGCCGTTACTACCACCACCTTCCGCAATCGGCAACGTTGAAAGCTGA | 2046 | 44.67 | MEGGNNGGSFRSLIDLVNDVASISDFRYAVRKQYCNLARRLKLLIPMFEEMRDMKQPLPDDTVQALASLKEALESTKELLRHGSEGSKIYLALEREQILNQFHKVTARLEQALNEISHEALDISDEVKEQVDLVLSQFKRARERKDTQDAELYVNLNSLYNNRDVATDPFVLKGLAEKLQLMDIADLTQESLALHEMVSASDGDPGGRFEKMSILLKRIKDFMLTENPEFGVSSKEQSHPRTGGQASAGKKDISSLHIPEDFRCPISLDLMKDPVIVSTGQFLNTSNNFPGELRGQDMMLHRGLTYERGFIEKWLADGHMTCPKTQQVLTSKILTPNYVLRSLIAQWCEANGIKPPQRASSSQPSELTPAERSKYEALLHKLTSGNIEDKRSAAGEIRLLAKRNANNRVAIAEAGAIPLLVDLLSTTDPLIQEHAVTALLNLSICDNNKRSIMSCRAAPGIVHVLKWGSMEARENAAATLFSLSVVDEYKIMIGASGAILPLIALLNEGTQRGKKDAATALFNLCFFQGNKIKAVRGGVVSILMQLLTESRIGMVDEALAILAILASNSEGRAAIGAAESVPILVNLIGTGSPRNRENAAAVLVHLCLGDKRHLVEAKELGAIGLLVDMAENGTDRGKRKATQLLDQINRFTELQKEAEVQSQSQSQPLLPPPSAIGNVES* | 682 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 18538898 | 18542629 | + | Chy11G198220.1 | Chy11g01242 | 237003 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy11g01242 | 681 | Pfam | Armadillo/beta-catenin-like repeat | 405 | 443 | IPR000225 | GO:0005515 | |
Chy11g01242 | 681 | Pfam | Armadillo/beta-catenin-like repeat | 487 | 525 | IPR000225 | GO:0005515 | |
Chy11g01242 | 681 | Pfam | Armadillo/beta-catenin-like repeat | 568 | 607 | IPR000225 | GO:0005515 | |
Chy11g01242 | 681 | SUPERFAMILY | RING/U-box | 252 | 282 | - | - | |
Chy11g01242 | 681 | MobiDBLite | consensus disorder prediction | 230 | 244 | - | - | |
Chy11g01242 | 681 | ProSiteProfiles | U-box domain profile. | 257 | 354 | IPR003613 | GO:0004842|GO:0016567 | |
Chy11g01242 | 681 | SMART | arm_5 | 404 | 444 | IPR000225 | GO:0005515 | |
Chy11g01242 | 681 | SMART | arm_5 | 527 | 567 | IPR000225 | GO:0005515 | |
Chy11g01242 | 681 | SMART | arm_5 | 486 | 526 | IPR000225 | GO:0005515 | |
Chy11g01242 | 681 | SMART | arm_5 | 445 | 485 | IPR000225 | GO:0005515 | |
Chy11g01242 | 681 | SMART | arm_5 | 568 | 608 | IPR000225 | GO:0005515 | |
Chy11g01242 | 681 | MobiDBLite | consensus disorder prediction | 656 | 672 | - | - | |
Chy11g01242 | 681 | PANTHER | RING-TYPE E3 UBIQUITIN TRANSFERASE | 297 | 662 | - | - | |
Chy11g01242 | 681 | Coils | Coil | 95 | 115 | - | - | |
Chy11g01242 | 681 | CDD | RING-Ubox_PUB | 262 | 327 | IPR045210 | - | |
Chy11g01242 | 681 | Pfam | U-box domain | 258 | 283 | IPR003613 | GO:0004842|GO:0016567 | |
Chy11g01242 | 681 | Pfam | U-box domain | 298 | 351 | IPR003613 | GO:0004842|GO:0016567 | |
Chy11g01242 | 681 | Gene3D | - | 361 | 673 | IPR011989 | - | |
Chy11g01242 | 681 | MobiDBLite | consensus disorder prediction | 656 | 681 | - | - | |
Chy11g01242 | 681 | MobiDBLite | consensus disorder prediction | 230 | 250 | - | - | |
Chy11g01242 | 681 | PANTHER | U BOX DOMAIN-CONTAINING | 11 | 286 | - | - | |
Chy11g01242 | 681 | SUPERFAMILY | RING/U-box | 299 | 356 | - | - | |
Chy11g01242 | 681 | PANTHER | U BOX DOMAIN-CONTAINING | 297 | 662 | - | - | |
Chy11g01242 | 681 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 415 | 453 | IPR000225 | GO:0005515 | |
Chy11g01242 | 681 | SMART | Ubox_2 | 261 | 347 | IPR003613 | GO:0004842|GO:0016567 | |
Chy11g01242 | 681 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 255 | 354 | IPR013083 | - | |
Chy11g01242 | 681 | SUPERFAMILY | ARM repeat | 376 | 648 | IPR016024 | - | |
Chy11g01242 | 681 | Gene3D | - | 9 | 120 | IPR036537 | GO:0007166 | |
Chy11g01242 | 681 | PANTHER | RING-TYPE E3 UBIQUITIN TRANSFERASE | 11 | 286 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Chy11g01242 | Chy12g00185 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy03g00861 | Chy-Chr3:11831154 | Chy11g01242 | Chy-Chr11:18538898 | 1.81E-31 | dispersed | |
Chy10g01301 | Chy-Chr10:17453715 | Chy11g01242 | Chy-Chr11:18538898 | 0 | dispersed | |
Chy11g00210 | Chy-Chr11:1971633 | Chy11g01242 | Chy-Chr11:18538898 | 5.37E-10 | dispersed | |
Chy11g00773 | Chy-Chr11:10806676 | Chy11g01242 | Chy-Chr11:18538898 | 6.00E-154 | dispersed | |
Chy11g01242 | Chy-Chr11:18538898 | Chy12g00056 | Chy-Chr12:498638 | 2.59E-87 | dispersed | |
Chy01g01096 | Chy-Chr1:12401459 | Chy11g01242 | Chy-Chr11:18538898 | 1.35E-07 | transposed | |
Chy05g00730 | Chy-Chr5:9934829 | Chy11g01242 | Chy-Chr11:18538898 | 1.39E-61 | transposed | |
Chy11g01242 | Chy-Chr11:18538898 | Chy12g00185 | Chy-Chr12:2245357 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy11g01242 | - | - | csv:101221150 | 1212.98 |