Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01242 ATGGAGGGAGGTAACAATGGCGGCTCCTTTCGGAGTTTGATCGACTTGGTGAACGATGTTGCTTCAATCTCTGACTTCAGGTACGCGGTCAGAAAGCAGTATTGTAATTTAGCTAGGCGGCTGAAGCTGTTGATCCCAATGTTTGAAGAGATGAGGGATATGAAGCAACCGCTGCCGGATGATACCGTTCAAGCTCTTGCTTCGTTGAAAGAAGCTCTGGAATCGACTAAGGAGTTGCTTAGACATGGGAGCGAGGGGAGCAAGATTTATCTGGCCTTGGAGAGAGAGCAAATTTTGAATCAATTTCACAAGGTGACAGCAAGACTGGAGCAAGCTCTGAATGAAATTTCACATGAAGCTCTTGACATATCTGATGAAGTCAAGGAGCAGGTTGACCTTGTTCTCTCTCAATTCAAAAGGGCTAGAGAAAGGAAGGATACACAAGATGCTGAGCTGTATGTTAACCTGAACTCTCTCTATAACAACAGAGATGTTGCTACTGATCCTTTTGTCTTGAAAGGATTGGCTGAGAAGTTGCAATTGATGGATATAGCTGATCTTACTCAAGAATCTCTTGCTTTACATGAAATGGTTTCGGCTAGTGATGGAGATCCAGGAGGGAGATTTGAGAAAATGTCAATACTATTGAAGAGAATAAAAGATTTTATGCTAACTGAAAACCCTGAATTTGGTGTTTCTTCAAAAGAACAGAGTCATCCTCGCACTGGTGGACAAGCGTCTGCTGGTAAGAAAGATATATCGTCCCTTCACATACCTGAGGACTTTCGATGCCCCATATCCCTGGATTTGATGAAAGATCCCGTCATTGTCTCTACAGGACAGTTCCTGAATACATCAAATAATTTTCCTGGAGAATTGAGAGGCCAAGATATGATGCTGCATCGAGGATTGACCTATGAACGTGGTTTCATTGAGAAGTGGCTGGCAGATGGACACATGACATGCCCAAAAACTCAACAAGTTCTCACTAGCAAAATTCTTACACCAAATTATGTTTTACGTAGTCTCATAGCTCAATGGTGCGAGGCCAATGGGATCAAACCACCACAACGTGCCAGCAGTTCTCAGCCGAGTGAGTTGACTCCGGCTGAACGCTCTAAGTATGAAGCTCTACTCCACAAACTCACATCAGGTAACATTGAAGACAAGCGATCTGCTGCTGGTGAGATTCGCCTTCTAGCCAAACGCAATGCAAATAATCGTGTAGCCATTGCTGAAGCTGGTGCAATTCCTCTTCTTGTTGATCTCCTTTCAACAACAGACCCCCTCATTCAAGAACATGCTGTGACAGCATTACTTAACCTATCAATTTGTGACAATAACAAGAGAAGCATCATGTCCTGTAGGGCTGCGCCTGGCATAGTCCATGTGCTGAAGTGGGGGAGTATGGAAGCACGTGAAAATGCTGCTGCCACTCTTTTCAGTCTCTCTGTTGTAGACGAATATAAAATAATGATTGGCGCATCGGGAGCCATTCTGCCACTTATTGCATTACTTAATGAAGGTACTCAAAGGGGGAAGAAGGATGCTGCAACCGCTCTATTCAACTTGTGTTTCTTCCAAGGGAACAAGATAAAGGCAGTCAGGGGTGGTGTTGTTTCCATACTAATGCAGCTGTTGACAGAATCTAGAATAGGGATGGTAGATGAGGCCCTTGCAATATTAGCCATACTGGCCAGCAATTCCGAAGGACGAGCCGCTATTGGAGCAGCCGAATCTGTCCCCATTTTAGTAAATCTCATTGGAACAGGATCCCCTAGGAATAGGGAAAATGCAGCTGCAGTTTTGGTGCATCTTTGCCTGGGAGACAAACGACATCTTGTTGAAGCAAAGGAGCTTGGAGCGATTGGTTTGCTTGTGGATATGGCAGAAAATGGAACAGACCGAGGTAAGCGAAAAGCAACACAATTGCTTGACCAAATAAACAGGTTTACAGAGCTGCAGAAAGAGGCTGAGGTTCAATCTCAGTCTCAATCCCAGCCGTTACTACCACCACCTTCCGCAATCGGCAACGTTGAAAGCTGA 2046 44.67 MEGGNNGGSFRSLIDLVNDVASISDFRYAVRKQYCNLARRLKLLIPMFEEMRDMKQPLPDDTVQALASLKEALESTKELLRHGSEGSKIYLALEREQILNQFHKVTARLEQALNEISHEALDISDEVKEQVDLVLSQFKRARERKDTQDAELYVNLNSLYNNRDVATDPFVLKGLAEKLQLMDIADLTQESLALHEMVSASDGDPGGRFEKMSILLKRIKDFMLTENPEFGVSSKEQSHPRTGGQASAGKKDISSLHIPEDFRCPISLDLMKDPVIVSTGQFLNTSNNFPGELRGQDMMLHRGLTYERGFIEKWLADGHMTCPKTQQVLTSKILTPNYVLRSLIAQWCEANGIKPPQRASSSQPSELTPAERSKYEALLHKLTSGNIEDKRSAAGEIRLLAKRNANNRVAIAEAGAIPLLVDLLSTTDPLIQEHAVTALLNLSICDNNKRSIMSCRAAPGIVHVLKWGSMEARENAAATLFSLSVVDEYKIMIGASGAILPLIALLNEGTQRGKKDAATALFNLCFFQGNKIKAVRGGVVSILMQLLTESRIGMVDEALAILAILASNSEGRAAIGAAESVPILVNLIGTGSPRNRENAAAVLVHLCLGDKRHLVEAKELGAIGLLVDMAENGTDRGKRKATQLLDQINRFTELQKEAEVQSQSQSQPLLPPPSAIGNVES* 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 18538898 18542629 + Chy11G198220.1 Chy11g01242 237003

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01242 681 Pfam Armadillo/beta-catenin-like repeat 405 443 IPR000225 GO:0005515
Chy11g01242 681 Pfam Armadillo/beta-catenin-like repeat 487 525 IPR000225 GO:0005515
Chy11g01242 681 Pfam Armadillo/beta-catenin-like repeat 568 607 IPR000225 GO:0005515
Chy11g01242 681 SUPERFAMILY RING/U-box 252 282 - -
Chy11g01242 681 MobiDBLite consensus disorder prediction 230 244 - -
Chy11g01242 681 ProSiteProfiles U-box domain profile. 257 354 IPR003613 GO:0004842|GO:0016567
Chy11g01242 681 SMART arm_5 404 444 IPR000225 GO:0005515
Chy11g01242 681 SMART arm_5 527 567 IPR000225 GO:0005515
Chy11g01242 681 SMART arm_5 486 526 IPR000225 GO:0005515
Chy11g01242 681 SMART arm_5 445 485 IPR000225 GO:0005515
Chy11g01242 681 SMART arm_5 568 608 IPR000225 GO:0005515
Chy11g01242 681 MobiDBLite consensus disorder prediction 656 672 - -
Chy11g01242 681 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 297 662 - -
Chy11g01242 681 Coils Coil 95 115 - -
Chy11g01242 681 CDD RING-Ubox_PUB 262 327 IPR045210 -
Chy11g01242 681 Pfam U-box domain 258 283 IPR003613 GO:0004842|GO:0016567
Chy11g01242 681 Pfam U-box domain 298 351 IPR003613 GO:0004842|GO:0016567
Chy11g01242 681 Gene3D - 361 673 IPR011989 -
Chy11g01242 681 MobiDBLite consensus disorder prediction 656 681 - -
Chy11g01242 681 MobiDBLite consensus disorder prediction 230 250 - -
Chy11g01242 681 PANTHER U BOX DOMAIN-CONTAINING 11 286 - -
Chy11g01242 681 SUPERFAMILY RING/U-box 299 356 - -
Chy11g01242 681 PANTHER U BOX DOMAIN-CONTAINING 297 662 - -
Chy11g01242 681 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 415 453 IPR000225 GO:0005515
Chy11g01242 681 SMART Ubox_2 261 347 IPR003613 GO:0004842|GO:0016567
Chy11g01242 681 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 354 IPR013083 -
Chy11g01242 681 SUPERFAMILY ARM repeat 376 648 IPR016024 -
Chy11g01242 681 Gene3D - 9 120 IPR036537 GO:0007166
Chy11g01242 681 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 286 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01242 - - - csv:101221150 1212.98
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy11g01242 Chy12g00185 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00861 Chy-Chr3:11831154 Chy11g01242 Chy-Chr11:18538898 1.81E-31 dispersed
Chy10g01301 Chy-Chr10:17453715 Chy11g01242 Chy-Chr11:18538898 0 dispersed
Chy11g00210 Chy-Chr11:1971633 Chy11g01242 Chy-Chr11:18538898 5.37E-10 dispersed
Chy11g00773 Chy-Chr11:10806676 Chy11g01242 Chy-Chr11:18538898 6.00E-154 dispersed
Chy11g01242 Chy-Chr11:18538898 Chy12g00056 Chy-Chr12:498638 2.59E-87 dispersed
Chy01g01096 Chy-Chr1:12401459 Chy11g01242 Chy-Chr11:18538898 1.35E-07 transposed
Chy05g00730 Chy-Chr5:9934829 Chy11g01242 Chy-Chr11:18538898 1.39E-61 transposed
Chy11g01242 Chy-Chr11:18538898 Chy12g00185 Chy-Chr12:2245357 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g428 . Blo03g01237 Bda02g00818 . . Bpe08g01367 Bma14g00501 . Cmo13g00131 . Cma01g00596 Cma13g00132 Car01g00541 Car13g00102 . . Cpe20g00814 Bhi08g00620 . . . . . . Cla02g01975 Cam02g2095 Cec02g2133 Cco02g2163 Clacu02g2083 Cmu02g2020 Cre02g2329 . . Cone18ag0344 Cone11ag1246 Lsi02g01363 Csa06g01498 Chy11g01242 Cme11g01284 . Blo14g00121 Bda07g00590 . . Bpe11g00764 . Bma11g00122 Sed05g2955 . . . Cma20g00410 . Car20g00358 . . Bhi10g00688 Tan05g0378 Cmetu11g2533 . . . . Cla03g00152 Cam03g0158 Cec03g0157 Cco03g0164 Clacu03g0161 Cmu03g0778 Cre03g0473 . Csa01g02400 Chy12g00185 Cme12g00199
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g01575 . 1 1043 U-box Gene Family AT5G15400 75.7 0.0e+00 1568.1
Chy11g00210 . 209 855 U-box Gene Family AT2G23140 66.0 6.6e-120 428.3
Chy03g01664 . 1 800 U-box Gene Family AT1G24330 55.4 5.2e-228 787.7
Chy10g00794 . 25 765 U-box Gene Family AT1G24330 57.7 4.7e-221 764.6
Chy03g01664 . 1 799 U-box Gene Family AT1G67530 55.2 3.5e-224 775.0
Chy10g00794 . 25 765 U-box Gene Family AT1G67530 56.3 7.9e-216 747.3
Chy02g00356 . 1 362 U-box Gene Family AT4G21350 62.1 1.0e-120 430.3
Chy04g00817 . 135 462 U-box Gene Family AT3G07360 54.4 2.2e-79 292.7
Chy09g00867 . 251 456 U-box Gene Family AT1G71020 53.1 3.1e-53 206.5
Chy10g01301 . 210 412 U-box Gene Family AT1G71020 51.9 8.7e-48 188.3
Chy12g00185 CCT 259 428 U-box Gene Family AT1G71020 57.8 1.5e-47 187.6
Chy12g00185 CCT 94 643 U-box Gene Family AT2G28830 57.9 1.7e-98 357.1
Chy12g00185 CCT 1 635 U-box Gene Family AT3G46510 68.3 2.0e-159 559.7
Chy11g01242 CCT 11 671 U-box Gene Family AT3G46510 64.0 8.6e-155 544.3
Chy10g01301 . 5 620 U-box Gene Family AT3G46510 58.5 1.3e-123 440.7
Chy10g01301 . 9 619 U-box Gene Family AT3G54850 69.1 1.2e-166 583.6
Chy11g01242 CCT 13 650 U-box Gene Family AT3G54850 55.2 2.9e-112 402.9
Chy12g00185 CCT 9 632 U-box Gene Family AT3G54850 55.2 1.1e-103 374.4
Chy11g00773 . 92 644 U-box Gene Family AT5G42340 64.6 4.9e-118 422.2
Chy08g00584 . 9 671 U-box Gene Family AT5G01830 57.9 2.1e-196 682.6
Chy12g00056 . 1 714 U-box Gene Family AT1G29340 67.3 7.5e-245 843.6
Chy06g01338 . 27 443 U-box Gene Family AT5G37490 51.6 1.3e-111 400.2
Chy08g00534 . 4 423 U-box Gene Family AT3G52450 50.8 5.2e-116 414.8
Chy05g00202 CCT,ECH 13 412 U-box Gene Family AT2G35930 51.9 1.4e-115 413.3
Chy08g00534 . 4 423 U-box Gene Family AT2G35930 50.4 5.4e-115 411.4
Chy04g01856 . 7 321 U-box Gene Family AT2G35930 50.9 3.7e-79 292.4
Chy06g01075 . 9 424 U-box Gene Family AT3G19380 64.2 2.7e-146 515.4
Chy06g01075 . 1 424 U-box Gene Family AT1G49780 64.3 2.1e-151 532.3
Chy02g01040 . 1 407 U-box Gene Family AT5G64660 54.7 1.0e-121 433.7
Chy02g01040 . 1 407 U-box Gene Family AT5G09800 50.8 2.0e-106 382.9
Chy07g00203 . 1 445 U-box Gene Family AT3G49810 63.2 1.8e-151 532.7
Chy03g01606 . 1 449 U-box Gene Family AT3G49810 61.0 2.6e-147 518.8
Chy03g01606 . 1 449 U-box Gene Family AT5G65920 61.5 1.9e-145 512.7
Chy07g00203 . 1 445 U-box Gene Family AT5G65920 61.9 4.1e-145 511.5
Chy06g00167 CCT 1 874 U-box Gene Family AT2G45910 51.3 9.6e-228 786.9
Chy09g01031 . 25 808 U-box Gene Family AT4G25160 52.4 3.4e-225 778.5
Chy09g00312 . 39 554 U-box Gene Family AT5G40140 55.4 7.8e-93 338.2
Chy02g02552 . 27 537 U-box Gene Family AT5G40140 51.6 8.6e-68 255.0
Chy03g00609 . 4 815 U-box Gene Family AT1G76390 60.6 2.3e-266 915.2
Chy03g00609 . 13 815 U-box Gene Family AT1G20780 61.1 1.0e-274 943.0
Chy10g00794 . 25 775 U-box Gene Family AT1G27910 62.6 2.2e-255 878.6
Chy03g01664 . 1 803 U-box Gene Family AT1G27910 58.5 1.2e-253 872.8
Chy02g00840 . 1 593 U-box Gene Family AT5G67530 74.2 4.0e-260 894.0
Chy04g01907 . 12 162 U-box Gene Family AT5G67530 50.3 8.8e-42 168.7
Chy06g00229 . 688 819 U-box Gene Family AT5G67530 56.1 1.4e-39 161.4
Chy09g01031 . 26 808 U-box Gene Family AT5G61550 50.5 1.6e-222 769.6
Chy06g00436 . 50 592 U-box Gene Family AT1G04510 70.7 7.4e-218 753.4
Chy06g00436 . 50 561 U-box Gene Family AT2G33340 69.6 5.6e-204 707.2
Chy04g00818 . 10 278 U-box Gene Family AT3G07370 66.5 1.3e-101 366.3
Chy04g01575 . 1 1043 U-box Gene Family AT5G15400 75.7 0.0e+00 1568.1
Chy11g00210 . 209 855 U-box Gene Family AT2G23140 66.0 6.6e-120 428.3
Chy03g01664 . 1 800 U-box Gene Family AT1G24330 55.4 5.2e-228 787.7
Chy10g00794 . 25 765 U-box Gene Family AT1G24330 57.7 4.7e-221 764.6
Chy03g01664 . 1 799 U-box Gene Family AT1G67530 55.2 3.5e-224 775.0
Chy10g00794 . 25 765 U-box Gene Family AT1G67530 56.3 7.9e-216 747.3
Chy02g00356 . 1 362 U-box Gene Family AT4G21350 62.1 1.0e-120 430.3
Chy04g00817 . 135 462 U-box Gene Family AT3G07360 54.4 2.2e-79 292.7
Chy09g00867 . 251 456 U-box Gene Family AT1G71020 53.1 3.1e-53 206.5
Chy10g01301 . 210 412 U-box Gene Family AT1G71020 51.9 8.7e-48 188.3
Chy12g00185 CCT 259 428 U-box Gene Family AT1G71020 57.8 1.5e-47 187.6
Chy12g00185 CCT 94 643 U-box Gene Family AT2G28830 57.9 1.7e-98 357.1
Chy12g00185 CCT 1 635 U-box Gene Family AT3G46510 68.3 2.0e-159 559.7
Chy11g01242 CCT 11 671 U-box Gene Family AT3G46510 64.0 8.6e-155 544.3
Chy10g01301 . 5 620 U-box Gene Family AT3G46510 58.5 1.3e-123 440.7
Chy10g01301 . 9 619 U-box Gene Family AT3G54850 69.1 1.2e-166 583.6
Chy11g01242 CCT 13 650 U-box Gene Family AT3G54850 55.2 2.9e-112 402.9
Chy12g00185 CCT 9 632 U-box Gene Family AT3G54850 55.2 1.1e-103 374.4
Chy11g00773 . 92 644 U-box Gene Family AT5G42340 64.6 4.9e-118 422.2
Chy08g00584 . 9 671 U-box Gene Family AT5G01830 57.9 2.1e-196 682.6
Chy12g00056 . 1 714 U-box Gene Family AT1G29340 67.3 7.5e-245 843.6
Chy06g01338 . 27 443 U-box Gene Family AT5G37490 51.6 1.3e-111 400.2
Chy08g00534 . 4 423 U-box Gene Family AT3G52450 50.8 5.2e-116 414.8
Chy05g00202 CCT,ECH 13 412 U-box Gene Family AT2G35930 51.9 1.4e-115 413.3
Chy08g00534 . 4 423 U-box Gene Family AT2G35930 50.4 5.4e-115 411.4
Chy04g01856 . 7 321 U-box Gene Family AT2G35930 50.9 3.7e-79 292.4
Chy06g01075 . 9 424 U-box Gene Family AT3G19380 64.2 2.7e-146 515.4
Chy06g01075 . 1 424 U-box Gene Family AT1G49780 64.3 2.1e-151 532.3
Chy02g01040 . 1 407 U-box Gene Family AT5G64660 54.7 1.0e-121 433.7
Chy02g01040 . 1 407 U-box Gene Family AT5G09800 50.8 2.0e-106 382.9
Chy07g00203 . 1 445 U-box Gene Family AT3G49810 63.2 1.8e-151 532.7
Chy03g01606 . 1 449 U-box Gene Family AT3G49810 61.0 2.6e-147 518.8
Chy03g01606 . 1 449 U-box Gene Family AT5G65920 61.5 1.9e-145 512.7
Chy07g00203 . 1 445 U-box Gene Family AT5G65920 61.9 4.1e-145 511.5
Chy06g00167 CCT 1 874 U-box Gene Family AT2G45910 51.3 9.6e-228 786.9
Chy09g01031 . 25 808 U-box Gene Family AT4G25160 52.4 3.4e-225 778.5
Chy09g00312 . 39 554 U-box Gene Family AT5G40140 55.4 7.8e-93 338.2
Chy02g02552 . 27 537 U-box Gene Family AT5G40140 51.6 8.6e-68 255.0
Chy03g00609 . 4 815 U-box Gene Family AT1G76390 60.6 2.3e-266 915.2
Chy03g00609 . 13 815 U-box Gene Family AT1G20780 61.1 1.0e-274 943.0
Chy10g00794 . 25 775 U-box Gene Family AT1G27910 62.6 2.2e-255 878.6
Chy03g01664 . 1 803 U-box Gene Family AT1G27910 58.5 1.2e-253 872.8
Chy02g00840 . 1 593 U-box Gene Family AT5G67530 74.2 4.0e-260 894.0
Chy04g01907 . 12 162 U-box Gene Family AT5G67530 50.3 8.8e-42 168.7
Chy06g00229 . 688 819 U-box Gene Family AT5G67530 56.1 1.4e-39 161.4
Chy09g01031 . 26 808 U-box Gene Family AT5G61550 50.5 1.6e-222 769.6
Chy06g00436 . 50 592 U-box Gene Family AT1G04510 70.7 7.4e-218 753.4
Chy06g00436 . 50 561 U-box Gene Family AT2G33340 69.6 5.6e-204 707.2
Chy04g00818 . 10 278 U-box Gene Family AT3G07370 66.5 1.3e-101 366.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013844 0 2 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 2 0 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01242 Chy_Chr11 FPKM 6.844444 9.322274 7.04225 6.316463 5.209886 3.893668 6.299698 3.81951 3.684156 4.846999