Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01242 ATGGAGGGAGGTAACAATGGCGGCTCCTTTCGGAGTTTGATCGACTTGGTGAACGATGTTGCTTCAATCTCTGACTTCAGGTACGCGGTCAGAAAGCAGTATTGTAATTTAGCTAGGCGGCTGAAGCTGTTGATCCCAATGTTTGAAGAGATGAGGGATATGAAGCAACCGCTGCCGGATGATACCGTTCAAGCTCTTGCTTCGTTGAAAGAAGCTCTGGAATCGACTAAGGAGTTGCTTAGACATGGGAGCGAGGGGAGCAAGATTTATCTGGCCTTGGAGAGAGAGCAAATTTTGAATCAATTTCACAAGGTGACAGCAAGACTGGAGCAAGCTCTGAATGAAATTTCACATGAAGCTCTTGACATATCTGATGAAGTCAAGGAGCAGGTTGACCTTGTTCTCTCTCAATTCAAAAGGGCTAGAGAAAGGAAGGATACACAAGATGCTGAGCTGTATGTTAACCTGAACTCTCTCTATAACAACAGAGATGTTGCTACTGATCCTTTTGTCTTGAAAGGATTGGCTGAGAAGTTGCAATTGATGGATATAGCTGATCTTACTCAAGAATCTCTTGCTTTACATGAAATGGTTTCGGCTAGTGATGGAGATCCAGGAGGGAGATTTGAGAAAATGTCAATACTATTGAAGAGAATAAAAGATTTTATGCTAACTGAAAACCCTGAATTTGGTGTTTCTTCAAAAGAACAGAGTCATCCTCGCACTGGTGGACAAGCGTCTGCTGGTAAGAAAGATATATCGTCCCTTCACATACCTGAGGACTTTCGATGCCCCATATCCCTGGATTTGATGAAAGATCCCGTCATTGTCTCTACAGGACAGTTCCTGAATACATCAAATAATTTTCCTGGAGAATTGAGAGGCCAAGATATGATGCTGCATCGAGGATTGACCTATGAACGTGGTTTCATTGAGAAGTGGCTGGCAGATGGACACATGACATGCCCAAAAACTCAACAAGTTCTCACTAGCAAAATTCTTACACCAAATTATGTTTTACGTAGTCTCATAGCTCAATGGTGCGAGGCCAATGGGATCAAACCACCACAACGTGCCAGCAGTTCTCAGCCGAGTGAGTTGACTCCGGCTGAACGCTCTAAGTATGAAGCTCTACTCCACAAACTCACATCAGGTAACATTGAAGACAAGCGATCTGCTGCTGGTGAGATTCGCCTTCTAGCCAAACGCAATGCAAATAATCGTGTAGCCATTGCTGAAGCTGGTGCAATTCCTCTTCTTGTTGATCTCCTTTCAACAACAGACCCCCTCATTCAAGAACATGCTGTGACAGCATTACTTAACCTATCAATTTGTGACAATAACAAGAGAAGCATCATGTCCTGTAGGGCTGCGCCTGGCATAGTCCATGTGCTGAAGTGGGGGAGTATGGAAGCACGTGAAAATGCTGCTGCCACTCTTTTCAGTCTCTCTGTTGTAGACGAATATAAAATAATGATTGGCGCATCGGGAGCCATTCTGCCACTTATTGCATTACTTAATGAAGGTACTCAAAGGGGGAAGAAGGATGCTGCAACCGCTCTATTCAACTTGTGTTTCTTCCAAGGGAACAAGATAAAGGCAGTCAGGGGTGGTGTTGTTTCCATACTAATGCAGCTGTTGACAGAATCTAGAATAGGGATGGTAGATGAGGCCCTTGCAATATTAGCCATACTGGCCAGCAATTCCGAAGGACGAGCCGCTATTGGAGCAGCCGAATCTGTCCCCATTTTAGTAAATCTCATTGGAACAGGATCCCCTAGGAATAGGGAAAATGCAGCTGCAGTTTTGGTGCATCTTTGCCTGGGAGACAAACGACATCTTGTTGAAGCAAAGGAGCTTGGAGCGATTGGTTTGCTTGTGGATATGGCAGAAAATGGAACAGACCGAGGTAAGCGAAAAGCAACACAATTGCTTGACCAAATAAACAGGTTTACAGAGCTGCAGAAAGAGGCTGAGGTTCAATCTCAGTCTCAATCCCAGCCGTTACTACCACCACCTTCCGCAATCGGCAACGTTGAAAGCTGA 2046 44.67 MEGGNNGGSFRSLIDLVNDVASISDFRYAVRKQYCNLARRLKLLIPMFEEMRDMKQPLPDDTVQALASLKEALESTKELLRHGSEGSKIYLALEREQILNQFHKVTARLEQALNEISHEALDISDEVKEQVDLVLSQFKRARERKDTQDAELYVNLNSLYNNRDVATDPFVLKGLAEKLQLMDIADLTQESLALHEMVSASDGDPGGRFEKMSILLKRIKDFMLTENPEFGVSSKEQSHPRTGGQASAGKKDISSLHIPEDFRCPISLDLMKDPVIVSTGQFLNTSNNFPGELRGQDMMLHRGLTYERGFIEKWLADGHMTCPKTQQVLTSKILTPNYVLRSLIAQWCEANGIKPPQRASSSQPSELTPAERSKYEALLHKLTSGNIEDKRSAAGEIRLLAKRNANNRVAIAEAGAIPLLVDLLSTTDPLIQEHAVTALLNLSICDNNKRSIMSCRAAPGIVHVLKWGSMEARENAAATLFSLSVVDEYKIMIGASGAILPLIALLNEGTQRGKKDAATALFNLCFFQGNKIKAVRGGVVSILMQLLTESRIGMVDEALAILAILASNSEGRAAIGAAESVPILVNLIGTGSPRNRENAAAVLVHLCLGDKRHLVEAKELGAIGLLVDMAENGTDRGKRKATQLLDQINRFTELQKEAEVQSQSQSQPLLPPPSAIGNVES* 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 18538898 18542629 + Chy11G198220.1 Chy11g01242 237003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01242 681 Pfam Armadillo/beta-catenin-like repeat 405 443 IPR000225 GO:0005515
Chy11g01242 681 Pfam Armadillo/beta-catenin-like repeat 487 525 IPR000225 GO:0005515
Chy11g01242 681 Pfam Armadillo/beta-catenin-like repeat 568 607 IPR000225 GO:0005515
Chy11g01242 681 SUPERFAMILY RING/U-box 252 282 - -
Chy11g01242 681 MobiDBLite consensus disorder prediction 230 244 - -
Chy11g01242 681 ProSiteProfiles U-box domain profile. 257 354 IPR003613 GO:0004842|GO:0016567
Chy11g01242 681 SMART arm_5 404 444 IPR000225 GO:0005515
Chy11g01242 681 SMART arm_5 527 567 IPR000225 GO:0005515
Chy11g01242 681 SMART arm_5 486 526 IPR000225 GO:0005515
Chy11g01242 681 SMART arm_5 445 485 IPR000225 GO:0005515
Chy11g01242 681 SMART arm_5 568 608 IPR000225 GO:0005515
Chy11g01242 681 MobiDBLite consensus disorder prediction 656 672 - -
Chy11g01242 681 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 297 662 - -
Chy11g01242 681 Coils Coil 95 115 - -
Chy11g01242 681 CDD RING-Ubox_PUB 262 327 IPR045210 -
Chy11g01242 681 Pfam U-box domain 258 283 IPR003613 GO:0004842|GO:0016567
Chy11g01242 681 Pfam U-box domain 298 351 IPR003613 GO:0004842|GO:0016567
Chy11g01242 681 Gene3D - 361 673 IPR011989 -
Chy11g01242 681 MobiDBLite consensus disorder prediction 656 681 - -
Chy11g01242 681 MobiDBLite consensus disorder prediction 230 250 - -
Chy11g01242 681 PANTHER U BOX DOMAIN-CONTAINING 11 286 - -
Chy11g01242 681 SUPERFAMILY RING/U-box 299 356 - -
Chy11g01242 681 PANTHER U BOX DOMAIN-CONTAINING 297 662 - -
Chy11g01242 681 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 415 453 IPR000225 GO:0005515
Chy11g01242 681 SMART Ubox_2 261 347 IPR003613 GO:0004842|GO:0016567
Chy11g01242 681 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 354 IPR013083 -
Chy11g01242 681 SUPERFAMILY ARM repeat 376 648 IPR016024 -
Chy11g01242 681 Gene3D - 9 120 IPR036537 GO:0007166
Chy11g01242 681 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 286 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy11g01242 Chy12g00185 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00861 Chy-Chr3:11831154 Chy11g01242 Chy-Chr11:18538898 1.81E-31 dispersed
Chy10g01301 Chy-Chr10:17453715 Chy11g01242 Chy-Chr11:18538898 0 dispersed
Chy11g00210 Chy-Chr11:1971633 Chy11g01242 Chy-Chr11:18538898 5.37E-10 dispersed
Chy11g00773 Chy-Chr11:10806676 Chy11g01242 Chy-Chr11:18538898 6.00E-154 dispersed
Chy11g01242 Chy-Chr11:18538898 Chy12g00056 Chy-Chr12:498638 2.59E-87 dispersed
Chy01g01096 Chy-Chr1:12401459 Chy11g01242 Chy-Chr11:18538898 1.35E-07 transposed
Chy05g00730 Chy-Chr5:9934829 Chy11g01242 Chy-Chr11:18538898 1.39E-61 transposed
Chy11g01242 Chy-Chr11:18538898 Chy12g00185 Chy-Chr12:2245357 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01242 - - csv:101221150 1212.98