Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01268 ATGAGGAGTGTGTTCTTCAATTCTCCAATTTCTTCTTCTGTACCGAGCACGCCGTCGTCCTCGCACTCGTCGTCTCGACCCACTTTATCGGATTCAATGGTTGAGGAGAATCTTGAAGTTGCAGAATCTTTTGTGATGAGGTGGAGACCTGATTCCACCATTGTTGGTTCTTTGTTTCGAGGAGATGACCGTGATGAAGCTCGGAAGTATATCAAAGCCGTTAAGGGTTTGTATAATTCCATGCATAGCCTTGCTTCTCGGGATTCATCTTCCCGGAAGCTTATGCGTGCTCATGATTTGATGAAGATAGCTATGGAGAGGCTACAGAAAGAGTTTTATCAGATCTTGTCAGCTAATCGAGAGTATTTGTATCCGGAATCGGTTTCTGGCATCCAATCGCCGATGACGATATCGGCCAGATCGAGTGTTTCTGATTTTGAATTGGAATCGGAAGATGAATTCCGATTTGCTAATGAATTTATTGCGGAGGTTGAGCGAGTGTCTATGTCGGCTATGGCGGATTTGAAAGCAATTGCGGATTGTATGATATCGACGGGCTATGGTAAGGAATGTGTGAAGGTTTATAAAAGTGTGAGGAAGTCGATAATTGATGAGAGTCTCTATAATCTAGGGATTGAGAAATTGAGTTTTTCGAAAGTTCAGAAGATGGATTGGGAGGTTCTGGAAATCAAAATCAAAATCTGGTTGAAAGGTGTGAAAACGGCAGTGAAGTCTTTGTTTGAAGGAGAGAAAATTCTTTGCGATCATGTTTTCTCAGGTTCCGTTCCAATCAGAGAATCGTGCTTCGCTCAAATTTCCAAAGACGGAGCAGAAATTCTGTTTGGATTTCCAGAATTAGTTGCGAAATACAAGAAAACTCCGGAGAAAATTTTCATTACGCTAGATCTATACGAAGCCATAGCCGATCTCTGGCCGGAGATCGATTACATTTTCTCATCCACAGCAACATCAATGATACAGTCACAAGCCGTCAGCTCACTAATCAAACTCGGAGAGAACATTCGAACATTACTCTCAGAATTCGAAATGGCTATTCAGAAAGAATCATCGAAAACGCCTGTTCCTAGAGGCGGTGTTCATCCACTCACTCGCTACGTGATGAACTACATCTCATTCCTCTCCGATTACAGTGGCATACTAAACGACATTGTAGCCGATTGGTCTTTAGCAACAAAATTATCAATGCCAGAATCATATTACGGAACACCTAAACAAGAAGATAGTCCAATTACCTTACGTTTCGCTTGGTTGATTCTCGTCCTCCTTTGCAAACTCGACGGCAAAGCAGAGCATTACAACGATGTCGCTCTCTCCTACTTGTTCTTAGCAAACAATCTCCAGTACATCGTTGAAAAAGTCCGTACCTCGAATCTGAGATTCATCCTCGGCAGCGACTGGGTTGAGAGACACGAATCGAAGATCAAACTGTACTCCTCCAAGTACAGACGCATTGGATGGAGTGGAGTTTTCTCGTCGCTACCGACGGATGTGACGGCTGAAATATCGCCGGAGGAAGCAAGAGAATCGTTTATAAATTTCAACAGAGCTTTTGAAGAAACTTACAGAAAACAAACCTCATGGATCGTCCCCGATCAGAAGCTTCGCGATGAACTAAAGATCTTATTAGCGAGGGAAATGGGAGCTCTCTATGGCGAGTTTTACAGGAGGAATCGGGTTCGGGTTAGGCGGGTTTCTGGGTCGGATCATGTGGTCAGATTATCGCCTGATGATTTGGGTAACTATTTATCGGATCTATTTTACGGGCATGGATCCGATAGTGTTGGGAGCGGGTCCTCGTCTCATGCATCCTCCCACTCCTCGCCGTCTTCCCGAGGGAGATTGGCCCGTTGA 1872 44.18 MRSVFFNSPISSSVPSTPSSSHSSSRPTLSDSMVEENLEVAESFVMRWRPDSTIVGSLFRGDDRDEARKYIKAVKGLYNSMHSLASRDSSSRKLMRAHDLMKIAMERLQKEFYQILSANREYLYPESVSGIQSPMTISARSSVSDFELESEDEFRFANEFIAEVERVSMSAMADLKAIADCMISTGYGKECVKVYKSVRKSIIDESLYNLGIEKLSFSKVQKMDWEVLEIKIKIWLKGVKTAVKSLFEGEKILCDHVFSGSVPIRESCFAQISKDGAEILFGFPELVAKYKKTPEKIFITLDLYEAIADLWPEIDYIFSSTATSMIQSQAVSSLIKLGENIRTLLSEFEMAIQKESSKTPVPRGGVHPLTRYVMNYISFLSDYSGILNDIVADWSLATKLSMPESYYGTPKQEDSPITLRFAWLILVLLCKLDGKAEHYNDVALSYLFLANNLQYIVEKVRTSNLRFILGSDWVERHESKIKLYSSKYRRIGWSGVFSSLPTDVTAEISPEEARESFINFNRAFEETYRKQTSWIVPDQKLRDELKILLAREMGALYGEFYRRNRVRVRRVSGSDHVVRLSPDDLGNYLSDLFYGHGSDSVGSGSSSHASSHSSPSSRGRLAR* 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 18902583 18904454 - Chy11G198480.1 Chy11g01268 237029

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01268 623 SUPERFAMILY Cullin repeat-like 57 593 IPR016159 -
Chy11g01268 623 MobiDBLite consensus disorder prediction 601 623 - -
Chy11g01268 623 MobiDBLite consensus disorder prediction 1 32 - -
Chy11g01268 623 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 21 600 - -
Chy11g01268 623 Pfam Exo70 exocyst complex subunit 235 591 IPR046364 GO:0000145|GO:0005546|GO:0006887
Chy11g01268 623 Gene3D Exocyst complex component Exo70 53 600 - -
Chy11g01268 623 PANTHER EXOCYST COMPLEX PROTEIN EXO70 21 600 IPR004140 GO:0000145|GO:0006887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01268 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101212978 1118.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g02117 Chy-Chr4:26479891 Chy11g01268 Chy-Chr11:18902583 0 dispersed
Chy11g01268 Chy-Chr11:18902583 Chy12g00132 Chy-Chr12:1479268 0 dispersed
Chy02g01759 Chy-Chr2:18785089 Chy11g01268 Chy-Chr11:18902583 4.39E-102 transposed
Chy04g00756 Chy-Chr4:9618640 Chy11g01268 Chy-Chr11:18902583 1.51E-108 transposed
Chy07g00871 Chy-Chr7:11768668 Chy11g01268 Chy-Chr11:18902583 3.59E-91 transposed
Chy12g01170 Chy-Chr12:16583153 Chy11g01268 Chy-Chr11:18902583 2.21E-98 transposed
Chy12g01498 Chy-Chr12:18822797 Chy11g01268 Chy-Chr11:18902583 4.62E-73 transposed
Chy11g01268 Chy-Chr11:18902583 Chy08g00789 Chy-Chr8:15529608 6.48E-137 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy10g01231 . 14 652 EXO70 exocyst subunit family AT5G03540 76.7 1.0e-285 979.2
Chy08g00976 . 1 640 EXO70 exocyst subunit family AT5G03540 70.9 2.3e-264 908.3
Chy08g00976 . 1 640 EXO70 exocyst subunit family AT5G52340 80.0 1.9e-297 1018.1
Chy10g01231 . 16 652 EXO70 exocyst subunit family AT5G52340 74.4 1.1e-271 932.6
Chy08g00976 . 145 632 EXO70 exocyst subunit family AT5G52350 63.2 1.2e-173 606.7
Chy10g01231 . 151 652 EXO70 exocyst subunit family AT5G52350 60.6 5.4e-169 591.3
Chy12g00323 . 1 630 EXO70 exocyst subunit family AT5G58430 66.3 4.9e-245 844.0
Chy12g00323 . 1 629 EXO70 exocyst subunit family AT1G07000 52.0 8.8e-175 610.5
Chy07g01488 . 60 673 EXO70 exocyst subunit family AT5G13150 53.0 1.1e-173 607.1
Chy04g00756 . 12 611 EXO70 exocyst subunit family AT1G72470 64.5 2.7e-214 741.9
Chy04g00756 . 9 607 EXO70 exocyst subunit family AT1G54090 62.0 3.7e-208 721.5
Chy04g00756 . 9 608 EXO70 exocyst subunit family AT3G14090 64.1 1.0e-218 756.5
Chy12g01170 . 18 656 EXO70 exocyst subunit family AT5G50380 62.0 1.7e-227 785.8
Chy02g01759 . 13 651 EXO70 exocyst subunit family AT5G50380 61.8 8.1e-225 776.9
Chy03g01199 . 13 683 EXO70 exocyst subunit family AT4G31540 73.1 5.9e-292 1000.0
Chy10g00590 . 58 601 EXO70 exocyst subunit family AT3G55150 51.1 9.4e-151 530.8
Chy11g01268 . 30 595 EXO70 exocyst subunit family AT3G55150 50.3 3.4e-148 522.3
Chy10g00590 . 27 601 EXO70 exocyst subunit family AT2G39380 51.5 2.2e-155 546.2
Chy04g02117 . 27 633 EXO70 exocyst subunit family AT3G09520 54.6 4.4e-177 618.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001818 3 2 3 3 3 2 0 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 2 2 3 3 2 2 2 0 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01268 Chy_Chr11 FPKM 6.887859 8.492773 9.107653 10.118124 12.561724 12.648561 13.115304 12.084194 11.323019 11.855542