Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01288 ATGGAACCGTCGGATAAACCAGCGCCGAAGTCGTCGTCACTGGCGCCATTTCCTCGGGACTCGCGAGGATCCTTAGAGGTTTTCAATCCCTCCTCCACTTACTCGTCCCGATCGATCAATTCCATCCCTCGGACGAACCCAACGTGGCCCAATTGGGCAGAGCCACGTAGCAGTGCGGAGTCGGATTCAACCAAACCCCCCGCTAAACCGCCGAGTAAAACCGGCGAGGAGATTACGTCATGGATGGCTTTCAAGGACTCAAACCCTTCCCCTTCCCCACAGCCCTCATCCCCACTAGCTCAAAAAACCATCTCGGCCATTCTGAGCGAAAAGTCGCCGTCGGGGAAGTCGCAATCGCAATCGCAATCGGCGGACGAAGTGGGTTCGGCCGCCTTACGCGCCGCCGAGTGGGGATTGGTACTGAAAACCGATACGGAAACTGGGAAGCCGCAAGGCGTTGGGGTTAGAACTTCGGGCGGCGATGAACCGAATACGAAACAGGAAAACTCCCGAAGGACTTCGAATAATTCGGTGCGGAGTTCGGGCGACGACATGTCGGAAGAAGGGGGAAGAGAAAGGGGGATTCCGAGAGTTTCTGAAGATTTAAAAGACGCTTTGTCGACATTTCAACAAACATTTGTGGTTTCTGATGCTACTAAACCTGATTATCCTATTATGTATGCTAGTGCTGGATTTTTCAAGATGACTGGCTATACTTCCAAGGAAGTTATTGGAAGAAATTGTCGATTTTTACAAGGTGCAGATACAGACCCAGAAGATGTGGCCAAGATCAGAGAAGCTTTACAAGCTGGGACAAGTTACTGTGGGAGGTTGTTGAATTACAAGAAAGATGGGACCCCTTTTTGGAACCTTCTTACTATTTCACCAATCAAAGATGATGATGGCAAAGTTCTCAAACTTATTGGAATGCAAGTGGAGGTGAGCAAACACACAGAAGGATTCAAGGATAAGATGGTCCGTCCCAATGGGTTGCCAGAATCATTGATTCGTTATGATGCCCGTCAAAAGGAGATGGCAACCAGTTCGGTAACGGAGCTTGTGCAGGCAGTGAAAAGGCCTCGGTCTATAAGTGAATATAGGCCTCGAGCTCTAAGTGAATCTATGAACCGGCGGTTATTTAGAAAATCCGGGGGCGGGGGTGGTGAGGGGGATAAGGATGAGGAGGACAAACTTGAACCGACTATGGTGAGACGGAAGTCTGAGAGTGCAGCAGCTCCAACGGGTCGAAGATCGCAGGGAGGAAGTAGAAGGTCGATGCAGCGTATTAATGAGGTGCCAGACAAAAAACCCAAAAAGTCTAGCCGTCGTTCATTTATGGGGATTATGAGGAAAAGTCAATCAAATGTTGAAGAAAGCTTTGACATTGAAGAAGGTTCGGATGACGATAATGAGTCCGATGACGATGTTAGACCAGATAGTGTTGATGACAAAGTAAGGCAGAGGGAAATGAGGAAGGGTATTGATTTAGCTACTACCCTTGAACGTATAGAAAAGAACTTTGTGATTACTGATCCTAGATTGCCTGACAATCCCATTATATTTGCATCTGATAGCTTTCTGGAGCTAACTGAGTACAGTAGAGAAGAAATCTTGGGAAGAAATTGCAGATTTCTGCAAGGTCCTGAAACTGATCGAACGACCGTCAAGAAAATAAGAGATGCAATTGACAATCAAACAGACGTTACAGTGCAGCTTATTAACTACACTAAAAGTGGTAAGAAGTTTTGGAACCTGTTTCATCTACAACCTATGCGTGACCAGAAGGGTGAAGTCCAATATTTCATTGGAGTTCAACTCGACGGTAGCCAACATGTGGAACCACTAAGCAATTGCATAGCGGAAAGTACTGCAAAGGAGGGCGAAAAACTGATAAAAGAAACTGCTGAAAATGTTGATTTGGCAGCCAGAGAACTTCCTGATGCCAATTTGACACCAGAAGATTTATGGGCAAATCATTCTAAGTTGGTTCAACCAAAACCTCACAGAAAGGATAGTCCTTCTTGGCAAGCTATCCAGAAGATTTTGGACAGTGGAGAACAGATAGGACTGAAACATTTCAAGCCAGTGAAGCCTTTGGGATCTGGTGATACTGGCAGTGTGCATTTGGTAGAACTGTGTGGGACTAATCAATACTTTGCAATGAAGGCAATGGATAAGGGTGTCATGCTCAACCGCAACAAGGTGCATAGAGCTTGCGCCGAGAGGGAAATACTTGACATGTTGGATCATCCTTTTCTTCCTGCGTTATACGCTTCGTTTCAGACAAAAACACATGTTTGTCTTATAACTGATTACTGCCCTGGTGGAGAACTCTTTCTGCTTTTGGACAGACAACCCACAAAGGTCATAAAGGAAGATGCTGTTAGGTTTTATGCTGCTGAAGTTGTCGTCGCATTGGAGTATCTCCATTGTCAAGGTAAGGCTTTGTCAGTGATTGTGGAGGTGGTAAAGTTAACCTTCAAGTTTCTTGCTGTGAATTTTATCTCTGTTCTTTCAGGGATAATTTATCGAGATCTAAAGCCTGAGAATGTTCTACTCCAGAGCAACGGCCATGTTGCCTTGACGGATTTTGACTTGTCATGTTTGACTTCTTGTAAACCTCAGCTTTTGCTTCCAGCAGCAAATGAGAAGAAAAAACAATCAAAAGCTCAACAGACTCCGATCTTTATGGCCGAACCAATGCGAGCTTCGAACTCCTTTGTTGGAACTGAAGAGTATATAGCACCGGAAATCATTACTGGGGCTGGCCATACTAGTGCAGTGGACTGGTGGGCTTTGGGCATCCTTCTATATGAAATGCTTTATGGATACACACCCTTTAGGGGGAAAACAAGGCAAAAGACCTTTGCCAACATTCTCCATAAGGATCTTAAATTTCCAAGAAGTATATCGGCTAGCCTCAATGCAAAGCAGTTAATTTTTAGGTTATTGCATAGAGACCCCAAAAACCGATTAGGTTCTCGAGAAGGCGCCAGTGAAATCAAACGGCATCCTTTCTTCCGAGGCGTCAATTGGGCGCTTGTCCGTTGCATGGTAAACTCGAAACTCAATTTCAAGAGACATCTTACTGAGAAGCTTCATTTCCTAACATATCTGATTGTTTTGCAGAATCCTCCCGAGCTCGAAGCGCCTCTTTTCCAGACCACCGATGGCGAAAAAGATGCTAATAAAGCATCAGATTTTGATCCAAAAGAACTTGAACTCAGTGTTTTCTGA 3237 45.26 MEPSDKPAPKSSSLAPFPRDSRGSLEVFNPSSTYSSRSINSIPRTNPTWPNWAEPRSSAESDSTKPPAKPPSKTGEEITSWMAFKDSNPSPSPQPSSPLAQKTISAILSEKSPSGKSQSQSQSADEVGSAALRAAEWGLVLKTDTETGKPQGVGVRTSGGDEPNTKQENSRRTSNNSVRSSGDDMSEEGGRERGIPRVSEDLKDALSTFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPEDVAKIREALQAGTSYCGRLLNYKKDGTPFWNLLTISPIKDDDGKVLKLIGMQVEVSKHTEGFKDKMVRPNGLPESLIRYDARQKEMATSSVTELVQAVKRPRSISEYRPRALSESMNRRLFRKSGGGGGEGDKDEEDKLEPTMVRRKSESAAAPTGRRSQGGSRRSMQRINEVPDKKPKKSSRRSFMGIMRKSQSNVEESFDIEEGSDDDNESDDDVRPDSVDDKVRQREMRKGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDRTTVKKIRDAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLSNCIAESTAKEGEKLIKETAENVDLAARELPDANLTPEDLWANHSKLVQPKPHRKDSPSWQAIQKILDSGEQIGLKHFKPVKPLGSGDTGSVHLVELCGTNQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFLPALYASFQTKTHVCLITDYCPGGELFLLLDRQPTKVIKEDAVRFYAAEVVVALEYLHCQGKALSVIVEVVKLTFKFLAVNFISVLSGIIYRDLKPENVLLQSNGHVALTDFDLSCLTSCKPQLLLPAANEKKKQSKAQQTPIFMAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPRSISASLNAKQLIFRLLHRDPKNRLGSREGASEIKRHPFFRGVNWALVRCMVNSKLNFKRHLTEKLHFLTYLIVLQNPPELEAPLFQTTDGEKDANKASDFDPKELELSVF* 1079
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19049688 19061814 - Chy11G198680.1 Chy11g01288 237049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01288 1078 SMART pac_2 275 317 IPR001610 -
Chy11g01288 1078 SMART pac_2 569 611 IPR001610 -
Chy11g01288 1078 ProSiteProfiles Protein kinase domain profile. 693 1007 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy11g01288 1078 PANTHER PHOTOTROPIN-1 145 1077 - -
Chy11g01288 1078 Pfam PAS domain 515 607 IPR000014 -
Chy11g01288 1078 Pfam PAS domain 219 315 IPR000014 -
Chy11g01288 1078 PANTHER FLIPPASE KINASE 1-RELATED 145 1077 - -
Chy11g01288 1078 SUPERFAMILY PYP-like sensor domain (PAS domain) 508 607 IPR035965 -
Chy11g01288 1078 MobiDBLite consensus disorder prediction 384 404 - -
Chy11g01288 1078 Gene3D Phosphorylase Kinase; domain 1 692 776 - -
Chy11g01288 1078 MobiDBLite consensus disorder prediction 141 196 - -
Chy11g01288 1078 CDD PAS 507 607 IPR000014 -
Chy11g01288 1078 Gene3D Transferase(Phosphotransferase) domain 1 839 1016 - -
Chy11g01288 1078 Gene3D Transferase(Phosphotransferase) domain 1 777 813 - -
Chy11g01288 1078 SMART serkin_6 693 1007 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy11g01288 1078 MobiDBLite consensus disorder prediction 25 68 - -
Chy11g01288 1078 ProSiteProfiles PAC domain profile. 272 326 IPR000700 -
Chy11g01288 1078 Pfam Protein kinase domain 695 1007 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy11g01288 1078 SMART pas_2 200 269 IPR000014 -
Chy11g01288 1078 SMART pas_2 494 563 IPR000014 -
Chy11g01288 1078 CDD STKc_phototropin_like 691 1018 - -
Chy11g01288 1078 TIGRFAM sensory_box: PAS domain S-box protein 517 607 IPR000014 -
Chy11g01288 1078 TIGRFAM sensory_box: PAS domain S-box protein 225 317 IPR000014 -
Chy11g01288 1078 MobiDBLite consensus disorder prediction 97 127 - -
Chy11g01288 1078 MobiDBLite consensus disorder prediction 460 476 - -
Chy11g01288 1078 ProSiteProfiles PAC domain profile. 566 620 IPR000700 -
Chy11g01288 1078 MobiDBLite consensus disorder prediction 365 488 - -
Chy11g01288 1078 ProSiteProfiles PAS repeat profile. 496 565 IPR000014 -
Chy11g01288 1078 SUPERFAMILY Protein kinase-like (PK-like) 671 1021 IPR011009 -
Chy11g01288 1078 SUPERFAMILY PYP-like sensor domain (PAS domain) 219 311 IPR035965 -
Chy11g01288 1078 Gene3D PAS domain 480 645 - -
Chy11g01288 1078 ProSiteProfiles PAS repeat profile. 198 269 IPR000014 -
Chy11g01288 1078 MobiDBLite consensus disorder prediction 158 183 - -
Chy11g01288 1078 MobiDBLite consensus disorder prediction 1 129 - -
Chy11g01288 1078 ProSitePatterns Protein kinases ATP-binding region signature. 699 722 IPR017441 GO:0005524
Chy11g01288 1078 ProSitePatterns Serine/Threonine protein kinases active-site signature. 841 853 IPR008271 GO:0004672|GO:0006468
Chy11g01288 1078 CDD PAS 225 314 IPR000014 -
Chy11g01288 1078 Gene3D PAS domain 212 367 - -
Chy11g01288 1078 MobiDBLite consensus disorder prediction 412 426 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00553 Chy-Chr1:3963768 Chy11g01288 Chy-Chr11:19049688 6.32E-16 dispersed
Chy05g00604 Chy-Chr5:7241553 Chy11g01288 Chy-Chr11:19049688 1.08E-10 dispersed
Chy07g00261 Chy-Chr7:2059432 Chy11g01288 Chy-Chr11:19049688 5.74E-47 dispersed
Chy10g00205 Chy-Chr10:5192758 Chy11g01288 Chy-Chr11:19049688 4.45E-14 dispersed
Chy11g01288 Chy-Chr11:19049688 Chy11g00891 Chy-Chr11:12313870 9.92E-103 dispersed
Chy11g01288 Chy-Chr11:19049688 Chy11g00746 Chy-Chr11:10264225 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71568 PF00069 Pkinase 3.60E-56 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01288 K20715 - csv:101214662 1905.57