Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01294 ATGTTTGATCTTAATCTCAATGTTGGCTCGCCTGATGCGGCTCAGAAGGAGGACTCCGTTGTGTTCTTTGAGAAGCTTCCTCAAGGTTCGGGGAACCAAATGGATGAATCAGGAACTTCCAATTCTTCGATTGTCAATGCGGATACCTCCAGCAATGGTGGCGATGATGACTCGTGCTCCACACGCGCCGGTGGTGAGCTCTTCACGTTTAACTTCGAGATATTGAAGGCTGGAAGCGCAAACGACGTTGTCACGAAAGAGCTTTTTCCAATAGGTGGAACGGTGAATGCTGACTTCGGGATTCTTCAAGGGCATAACTCCGCCTCTTCTTCCTCCACTTCATCGAGGAAGAACTGGATCAACCTTGCGTTTGATCGAAGCGGGTCGGCAGGGGAGGGGAGAATGGTTCAGCCGGTTCAGCCTCAGCCGGTGAAGAAGAGCAGGAGGGGACCGAGGTCTCGGAGCTCACAGTACAGGGGCGTCACATTCTACCGGAGGACTGGGCGGTGGGAATCTCATATCTGGGACTGCGGGAAGCAAGTCTATCTCGGTGGATTCGACACTGCACATTCTGCAGCAAGAGCATATGATCGAGCTGCTATCAAGTTCAGAGGGGTTGATGCTGACATTAATTTCAATCTTAGTGATTATGAGGATGATCTGAAACAGATGAAGAATTTAAGCAAGGAAGAGTTTGTTCACATACTTCGTCGCCAGAGTACTGGTTTCTCAAGAGGGAGCTCCAAATATAGAGGGGTGACACTGCACAAATGTGGCCGATGGGAAGCTAGGATGGGGCAGCTCCTTGGGAAAAAGTATATATATCTTGGGCTATTCGACAGCGAGGTAGAAGCTGCAAGGGCTTATGACAAAGCAGCAATCAAATGTAATGGGCGGGAGGCAGTAACAAATTTTGAGCCTAGCACATACGGAGAGAGAATTTCTGAGGGCAGCAGTGAAGGTGGGTGGAACATGCTCGATTTGAATTTAGGGATTTCGCCTCCCTCACTTGACAACTCTCCAAAGGATTCTGAGGGGCATCTGCGGTTTCAATCTGGTTCTTGTTATGCTAATGACAGGAGCACAATGATGGAAAGCAATGCTGATGCAGCAGTTGGCGATCCACCTATGAAAGGACCGGTAATCACATCAGAGCATGCTCCCTTATGGAATGGTTTACAAACAAGCTTCCTTCCCAGTGAGGAAATCGTGACAGAGAAGAGACTTGCATTAGGTTCATCCCAAGGAATTCCCCCCAACTGGGGATGGCAAATTCATAGCCAGGTTAATGCCACCCAAGTGCCACTGTTCTCTGCTGCAGCATCATCAGGATTCTCATTTTCAGCTACCCATTTCCCGGCTGCCATCCATCCACTGTGCCGTCCGGGCTCGACTGCCCATAACCTCCATTTCACTACACCCAAAGCTTCTTCCCTCAACTCCCCCCAGCATCATCATCACCACCAGTTGAACCCACAACAGGCACCACCATAA 1494 49.67 MFDLNLNVGSPDAAQKEDSVVFFEKLPQGSGNQMDESGTSNSSIVNADTSSNGGDDDSCSTRAGGELFTFNFEILKAGSANDVVTKELFPIGGTVNADFGILQGHNSASSSSTSSRKNWINLAFDRSGSAGEGRMVQPVQPQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADINFNLSDYEDDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYGERISEGSSEGGWNMLDLNLGISPPSLDNSPKDSEGHLRFQSGSCYANDRSTMMESNADAAVGDPPMKGPVITSEHAPLWNGLQTSFLPSEEIVTEKRLALGSSQGIPPNWGWQIHSQVNATQVPLFSAAASSGFSFSATHFPAAIHPLCRPGSTAHNLHFTTPKASSLNSPQHHHHHQLNPQQAPP* 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19151202 19154380 - Chy11G198740.1 Chy11g01294 237055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01294 497 ProSiteProfiles AP2/ERF domain profile. 157 213 IPR001471 GO:0003700|GO:0006355
Chy11g01294 497 CDD AP2 157 215 IPR001471 GO:0003700|GO:0006355
Chy11g01294 497 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 457 - -
Chy11g01294 497 Gene3D AP2/ERF domain 156 214 IPR036955 GO:0003700|GO:0006355
Chy11g01294 497 Gene3D AP2/ERF domain 248 307 IPR036955 GO:0003700|GO:0006355
Chy11g01294 497 CDD AP2 248 308 IPR001471 GO:0003700|GO:0006355
Chy11g01294 497 MobiDBLite consensus disorder prediction 467 497 - -
Chy11g01294 497 Pfam AP2 domain 157 205 IPR001471 GO:0003700|GO:0006355
Chy11g01294 497 Pfam AP2 domain 248 298 IPR001471 GO:0003700|GO:0006355
Chy11g01294 497 MobiDBLite consensus disorder prediction 130 158 - -
Chy11g01294 497 ProSiteProfiles AP2/ERF domain profile. 249 306 IPR001471 GO:0003700|GO:0006355
Chy11g01294 497 PRINTS Ethylene responsive element binding protein signature 250 261 IPR001471 GO:0003700|GO:0006355
Chy11g01294 497 PRINTS Ethylene responsive element binding protein signature 288 308 IPR001471 GO:0003700|GO:0006355
Chy11g01294 497 MobiDBLite consensus disorder prediction 30 58 - -
Chy11g01294 497 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 457 - -
Chy11g01294 497 MobiDBLite consensus disorder prediction 28 58 - -
Chy11g01294 497 SUPERFAMILY DNA-binding domain 156 214 IPR016177 GO:0003677
Chy11g01294 497 SUPERFAMILY DNA-binding domain 248 307 IPR016177 GO:0003677
Chy11g01294 497 SMART rav1_2 249 312 IPR001471 GO:0003700|GO:0006355
Chy11g01294 497 SMART rav1_2 157 219 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g00619 Chy-Chr10:12785616 Chy11g01294 Chy-Chr11:19151202 2.89E-81 dispersed
Chy11g00229 Chy-Chr11:2147611 Chy11g01294 Chy-Chr11:19151202 6.69E-104 dispersed
Chy11g01294 Chy-Chr11:19151202 Chy04g00696 Chy-Chr4:8352238 2.75E-09 dispersed
Chy11g01294 Chy-Chr11:19151202 Chy04g02096 Chy-Chr4:26347995 7.68E-125 wgd
Chy11g01294 Chy-Chr11:19151202 Chy08g00813 Chy-Chr8:15713566 8.00E-126 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18751 PF00847 AP2 3.10E-09 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01294 K09284 - csv:101222024 926.776