Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01306 ATGGAAGAGTTCCTAGACAATATACCTCCCATGGATCTGATGCGTTCCGAGAAGATGACTTTTGTTCAGCTCATTATCCCTGTTGAGTCCGCTCATCGAGCCATTTCATATCTTGGCGAGCTTGGCATCCTTCAATTTAGAGATTTAAACGTGGACAAAAGTCCTTTCCAGAGAACCTTTGTTAACCAGGTAAAGCGATGTGCAGAGATGTCAAGGAAGCTAAGATTTTTCAAAGATCAAATCAGTAAAGCTGGTGTACTGGCATCTACACGCCCAATTCTTCAAGAACATATTGAACTAGAGGATTTAGAGATACGACTGGCTGATCATGAGCATGAGCTGATTGAAATGAACTCTAACAGTGAGAAACTTCGACAGTCATATAATGAACTATTAGAATTCAAGATGGTATTGCAAAAGGCAAGCGTCTTTCTGGTGTCCAGTAATAGCCATTCAGTTTCTGAAGAAAGGGAGTTGAATGAAAATGTTTTCTTGAATGATAGCTATGTTGAGGATGGATCATTACTTGAACGGGAAATGAGACCTGGACCATCCAACCAATCTGGTTTGAGATTTATTTGTGGAATTATTTGTAAATCCAAAGTTCTTAGATTTGAAAGGATGTTGTTCCGTGCGACAAGGGGAAACATGCTTTTCAATCAGGCACCAGCTGATGTACAGATCGTGGATCCCATATCTACAGAAATGGTTGAGAAAACAGTATTTGTTGTGTTTTTCTCTGGGGAGCAGGCCCGAAACAAAGTTTTGAAGATCTGTGAGGCTTTTGGAGCAAATTGCTATCCTGTTCCTGAAGATATAACCAAACAGAGGCAGATAACTAGAGAAGTATCATCTCGCCTCACGGAACTTGAGGCCACTTTAGATGCTGGGATCCGACACCGAAACGAGGCTCTTGCATCAATAGGGTTTCACTTGATTAAATGGATGAATATGGTAAGAAGGGAAAAGGCTGTATATGATACGTTAAACATGTTGAATTTTGATGTCACTAAAAAATGTCTTGTTGGAGAAGGATGGTGCCCAATCTTTGCCAAAACTCAGATTCAAGAGGCACTACAGCGAGCAACATTTGATAGTAGTTCACAAGTGGGGATAATATTTCATGTGATGGATACGGTTGAATCCCCTCCTACACATTTTAGAACAAACCGTTTGACAAATGCTTTTCAAGAAATTGTTGACGCCTATGGTGTTGCTAGATATCAAGAAGCAAATCCTACAGTTTACACTGTTATTACATTTCCATTCCTATTCGCAGTGATGTTTGGGGATTGGGGTCATGGAATATGCTTGTTGCTTGGAGCTTTAGTTCTTATAGCTCGTGAAAGTAAGCTCAATAATCAGAAATTAGGAAGCTTTATGGAGATGCTATTTGGTGGCCGCTATGTCCTTCTTTTGATGTCCCTATTTTCAATTTATTGTGGGTTAATCTACAATGAGTTCTTCTCTGTTCCATATCATATATTTGGTGCATCTGCTTACAAGTGTCGAGATAATTCATGCAGTGATGCCCACACTGTTGGCTTAGTTAAATACCGTGATCCATATCCATTCGGTGTTGACCCAAGCTGGCGTGGAAGTCGTTCAGAACTTCCTTTTCTGAATTCTCTTAAAATGAAGATGTCTATCTTGTTGGGTATAGCTCAAATGAACTTAGGGATCATATTGAGTTATTTTAATGCCCGTTTTACTGGAAGCTCAATCGATATCAGGTACCAGTTTATACCACAAGTGATCTTCCTTAATAGCCTTTTTGGATATCTTTCTCTTCTCATTGTCATCAAGTGGTGCACCGGATCTCAAGCAGACCTCTATCATGTGATGATTTACATGTTTTTAAGCCCATTTGAGGATCTTGGTGAGAACGAACTGTTTTGGGGCCAAAGACCTCTTCAAATTATATTGTTGATGTTGGCGATAGTTGCAGTGCCTTGGATGCTTTTTCCTAAACCCTTTATTTTGAAAAAGATGCACACAGAGAGATTTCAAGGCCGTACTTATGGAATGCTTGGAACCTCTGAGATTGATCTTGAGGTGGAACCTGATTCAGCAAGGCAACACCAAGAGGACTTCAATTTTAGTGAGATTTTTGTTCACCAAATGATTCACTCCATAGAATTCGTCTTGGGTGCAGTTTCAAATACAGCATCCTATCTCCGACTTTGGGCTTTAAGCTTGGCGCACTCAGAACTGTCAACAGTTTTCTATGAGAAAGTACTACTCTTAGCTTGGGGGTATGACAGCTTTGTCATTCGGCTGATTGGTTTAGCTGTTTTTTCGTTTGCAACTGCTTTCATACTTCTTATGATGGAGACCCTCAGTGCCTTCCTTCATGCCTTGCGTCTTCATTGGGTCGAGTTTCAAAATAAGTTCTACCATGGTGATGGCCACAAGTTCAAACCTTTTTCCTTTGCTTCCATCGATGAGGACGAAGATTAA 2460 40.28 MEEFLDNIPPMDLMRSEKMTFVQLIIPVESAHRAISYLGELGILQFRDLNVDKSPFQRTFVNQVKRCAEMSRKLRFFKDQISKAGVLASTRPILQEHIELEDLEIRLADHEHELIEMNSNSEKLRQSYNELLEFKMVLQKASVFLVSSNSHSVSEERELNENVFLNDSYVEDGSLLEREMRPGPSNQSGLRFICGIICKSKVLRFERMLFRATRGNMLFNQAPADVQIVDPISTEMVEKTVFVVFFSGEQARNKVLKICEAFGANCYPVPEDITKQRQITREVSSRLTELEATLDAGIRHRNEALASIGFHLIKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKTQIQEALQRATFDSSSQVGIIFHVMDTVESPPTHFRTNRLTNAFQEIVDAYGVARYQEANPTVYTVITFPFLFAVMFGDWGHGICLLLGALVLIARESKLNNQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGASAYKCRDNSCSDAHTVGLVKYRDPYPFGVDPSWRGSRSELPFLNSLKMKMSILLGIAQMNLGIILSYFNARFTGSSIDIRYQFIPQVIFLNSLFGYLSLLIVIKWCTGSQADLYHVMIYMFLSPFEDLGENELFWGQRPLQIILLMLAIVAVPWMLFPKPFILKKMHTERFQGRTYGMLGTSEIDLEVEPDSARQHQEDFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDSFVIRLIGLAVFSFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGHKFKPFSFASIDEDED* 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19304033 19313672 - Chy11G198860.1 Chy11g01306 237067

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01306 819 PIRSF ATP6V0A1 9 819 IPR026028 GO:0000220|GO:0046961
Chy11g01306 819 Pfam V-type ATPase 116kDa subunit family 37 811 IPR002490 GO:0033179|GO:0046961|GO:1902600
Chy11g01306 819 PANTHER VACUOLAR PROTON ATPASE A1 5 819 - -
Chy11g01306 819 PANTHER VACUOLAR PROTON ATPASES 5 819 IPR002490 GO:0033179|GO:0046961|GO:1902600
Chy11g01306 819 Coils Coil 93 127 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01306 K02154 ATPeV0A, ATP6N; V-type H+-transporting ATPase subunit a - csv:101216514 1633.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00757 Chy-Chr1:5656055 Chy11g01306 Chy-Chr11:19304033 0 dispersed
Chy11g01306 Chy-Chr11:19304033 Chy03g01413 Chy-Chr3:16871625 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g328 . . Bda02g00785 Bda09g01479 Bpe01g00166 . . . . . . . . . . Cpe05g00871 . . . . . . . . Cla02g02031 Cam02g2151 Cec02g2193 Cco02g2230 Clacu02g2138 Cmu02g2073 Cre02g2386 . . . . . . Chy11g01306 Cme11g01758 . . . . Bpe08g00136 . Bma07g00127 . Sed01g0903 Cmo02g00864 Cmo20g00495 Cma02g00864 Cma20g00461 Car02g00626 Car20g00400 . . Bhi10g00598 Tan05g0297 Cmetu03g1529 . Hepe08g0853 . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy03g01604 . 376 1373 Primary Pumps ATPases(2) AT1G10130 82.8 0.0e+00 1621.7
Chy11g01306 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.3 0.0e+00 1340.1
Chy03g01413 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.2 8.0e-296 1013.1
Chy01g00757 . 10 813 Primary Pumps ATPases(2) AT2G28520 63.3 3.4e-294 1007.7
Chy01g00757 . 6 819 Primary Pumps ATPases(2) AT2G21410 75.6 0.0e+00 1226.1
Chy03g01413 . 1 809 Primary Pumps ATPases(2) AT2G21410 73.4 0.0e+00 1197.6
Chy11g01306 . 9 820 Primary Pumps ATPases(2) AT2G21410 62.2 3.0e-298 1021.1
Chy01g00757 . 8 819 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1231.5
Chy03g01413 . 1 809 Primary Pumps ATPases(2) AT4G39080 74.3 0.0e+00 1192.9
Chy11g01306 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.5 5.6e-297 1016.9
Chy06g00369 . 28 129 Primary Pumps ATPases(2) AT4G34720 93.1 1.1e-38 156.4
Chy03g01403 . 36 130 Primary Pumps ATPases(2) AT4G34720 98.9 1.9e-38 155.6
Chy03g01404 . 28 121 Primary Pumps ATPases(2) AT4G34720 100.0 9.2e-38 153.3
Chy06g00369 . 2 123 Primary Pumps ATPases(2) AT1G75630 95.9 1.3e-50 196.4
Chy03g01404 . 2 124 Primary Pumps ATPases(2) AT1G75630 95.1 5.1e-50 194.5
Chy03g01403 . 2 130 Primary Pumps ATPases(2) AT1G75630 90.7 4.7e-48 188.0
Chy06g00369 . 3 129 Primary Pumps ATPases(2) AT2G16510 93.7 1.3e-51 199.5
Chy03g01404 . 3 121 Primary Pumps ATPases(2) AT2G16510 99.2 8.4e-51 196.8
Chy03g01403 . 3 130 Primary Pumps ATPases(2) AT2G16510 92.2 3.5e-49 191.4
Chy06g00369 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.1e-52 202.6
Chy03g01404 . 1 121 Primary Pumps ATPases(2) AT1G19910 97.5 1.6e-51 198.7
Chy03g01403 . 1 130 Primary Pumps ATPases(2) AT1G19910 92.3 1.8e-50 195.3
Chy04g00346 . 1 175 Primary Pumps ATPases(2) AT2G25610 84.0 2.6e-71 265.4
Chy03g01156 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.2 2.9e-70 261.9
Chy06g00369 . 28 129 Primary Pumps ATPases(2) AT4G38920 93.1 3.1e-38 154.8
Chy03g01403 . 36 130 Primary Pumps ATPases(2) AT4G38920 98.9 5.2e-38 154.1
Chy03g01404 . 28 121 Primary Pumps ATPases(2) AT4G38920 100.0 2.6e-37 151.8
Chy04g00346 . 6 175 Primary Pumps ATPases(2) AT4G32530 77.5 2.0e-73 272.3
Chy03g01156 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 2.4e-71 265.4
Chy12g00153 . 1 1066 Primary Pumps ATPases(2) AT1G07810 80.4 0.0e+00 1667.5
Chy12g00153 . 1 1066 Primary Pumps ATPases(2) AT1G07670 80.3 0.0e+00 1669.1
Chy03g01604 . 376 1373 Primary Pumps ATPases(2) AT1G10130 82.8 0.0e+00 1621.7
Chy12g00153 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.4 0.0e+00 1313.9
Chy02g01423 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 1.2e-57 219.2
Chy01g00662 . 6 489 Primary Pumps ATPases(2) AT1G76030 96.3 1.5e-268 921.8
Chy05g00536 . 553 814 Primary Pumps ATPases(2) AT3G58730 82.1 1.6e-117 419.1
Chy04g01674 . 14 466 Primary Pumps ATPases(2) AT3G42050 79.5 5.8e-208 720.3
Chy06g00369 . 3 129 Primary Pumps ATPases(2) AT2G16510 93.7 1.3e-51 199.5
Chy03g01404 . 3 121 Primary Pumps ATPases(2) AT2G16510 99.2 8.4e-51 196.8
Chy03g01403 . 3 130 Primary Pumps ATPases(2) AT2G16510 92.2 3.5e-49 191.4
Chy01g00662 . 1 489 Primary Pumps ATPases(2) AT4G38510 95.5 2.3e-269 924.5
Chy06g01559 . 177 360 Primary Pumps ATPases(2) AT1G64200 73.3 1.8e-65 245.7
Chy01g00662 . 9 489 Primary Pumps ATPases(2) AT1G20260 96.1 3.0e-266 914.1
Chy11g01306 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.3 0.0e+00 1340.1
Chy03g01413 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.2 8.0e-296 1013.1
Chy01g00757 . 10 813 Primary Pumps ATPases(2) AT2G28520 63.3 3.4e-294 1007.7
Chy04g01523 . 1 351 Primary Pumps ATPases(2) AT3G28715 91.7 8.6e-191 662.9
Chy06g01559 . 177 406 Primary Pumps ATPases(2) AT4G11150 76.6 1.3e-89 326.2
Chy01g02105 . 1 624 Primary Pumps ATPases(2) AT1G78900 92.8 0.0e+00 1167.1
Chy01g00662 . 6 489 Primary Pumps ATPases(2) AT1G76030 96.3 1.5e-268 921.8
Chy01g00662 . 1 489 Primary Pumps ATPases(2) AT4G38510 95.5 2.3e-269 924.5
Chy01g00662 . 9 489 Primary Pumps ATPases(2) AT1G20260 96.1 3.0e-266 914.1
Chy05g00536 . 553 814 Primary Pumps ATPases(2) AT3G58730 82.1 1.6e-117 419.1
Chy06g01559 . 177 406 Primary Pumps ATPases(2) AT4G11150 76.6 1.3e-89 326.2
Chy06g01559 . 177 399 Primary Pumps ATPases(2) AT3G08560 68.1 7.7e-74 273.9
Chy06g01559 . 177 360 Primary Pumps ATPases(2) AT1G64200 73.3 1.8e-65 245.7
Chy02g01423 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 1.2e-57 219.2
Chy04g01674 . 14 466 Primary Pumps ATPases(2) AT3G42050 79.5 5.8e-208 720.3
Chy11g01306 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.3 0.0e+00 1340.1
Chy03g01413 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.2 8.0e-296 1013.1
Chy01g00757 . 10 813 Primary Pumps ATPases(2) AT2G28520 63.3 3.4e-294 1007.7
Chy01g00757 . 6 819 Primary Pumps ATPases(2) AT2G21410 75.6 0.0e+00 1226.1
Chy03g01413 . 1 809 Primary Pumps ATPases(2) AT2G21410 73.4 0.0e+00 1197.6
Chy11g01306 . 9 820 Primary Pumps ATPases(2) AT2G21410 62.2 3.0e-298 1021.1
Chy01g00757 . 8 819 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1231.5
Chy03g01413 . 1 809 Primary Pumps ATPases(2) AT4G39080 74.3 0.0e+00 1192.9
Chy11g01306 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.5 5.6e-297 1016.9
Chy06g00369 . 28 129 Primary Pumps ATPases(2) AT4G34720 93.1 1.1e-38 156.4
Chy03g01403 . 36 130 Primary Pumps ATPases(2) AT4G34720 98.9 1.9e-38 155.6
Chy03g01404 . 28 121 Primary Pumps ATPases(2) AT4G34720 100.0 9.2e-38 153.3
Chy06g00369 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.1e-52 202.6
Chy03g01404 . 1 121 Primary Pumps ATPases(2) AT1G19910 97.5 1.6e-51 198.7
Chy03g01403 . 1 130 Primary Pumps ATPases(2) AT1G19910 92.3 1.8e-50 195.3
Chy06g00369 . 28 129 Primary Pumps ATPases(2) AT4G38920 93.1 3.1e-38 154.8
Chy03g01403 . 36 130 Primary Pumps ATPases(2) AT4G38920 98.9 5.2e-38 154.1
Chy03g01404 . 28 121 Primary Pumps ATPases(2) AT4G38920 100.0 2.6e-37 151.8
Chy06g00369 . 2 123 Primary Pumps ATPases(2) AT1G75630 95.9 1.3e-50 196.4
Chy03g01404 . 2 124 Primary Pumps ATPases(2) AT1G75630 95.1 5.1e-50 194.5
Chy03g01403 . 2 130 Primary Pumps ATPases(2) AT1G75630 90.7 4.7e-48 188.0
Chy06g00369 . 3 129 Primary Pumps ATPases(2) AT2G16510 93.7 1.3e-51 199.5
Chy03g01404 . 3 121 Primary Pumps ATPases(2) AT2G16510 99.2 8.4e-51 196.8
Chy03g01403 . 3 130 Primary Pumps ATPases(2) AT2G16510 92.2 3.5e-49 191.4
Chy04g00346 . 6 175 Primary Pumps ATPases(2) AT4G32530 77.5 2.0e-73 272.3
Chy03g01156 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 2.4e-71 265.4
Chy04g00346 . 1 175 Primary Pumps ATPases(2) AT2G25610 84.0 2.6e-71 265.4
Chy03g01156 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.2 2.9e-70 261.9
Chy04g01523 . 1 351 Primary Pumps ATPases(2) AT3G28710 94.0 7.4e-198 686.4
Chy04g01523 . 1 351 Primary Pumps ATPases(2) AT3G28715 91.7 8.6e-191 662.9
Chy12g00153 . 1 1066 Primary Pumps ATPases(2) AT1G07810 80.4 0.0e+00 1667.5
Chy12g00153 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.4 0.0e+00 1313.9
Chy03g01604 . 376 1373 Primary Pumps ATPases(2) AT1G10130 82.8 0.0e+00 1621.7
Chy12g00153 . 1 1066 Primary Pumps ATPases(2) AT1G07670 80.3 0.0e+00 1669.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000455 4 5 5 3 4 3 5 3 3 3 3 3 6 3 3 5 3 6 6 3 3 3 3 3 3 3 3 7 4 4 115
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01306 Chy_Chr11 FPKM 3.271889 3.543111 8.268209 10.133927 4.129992 3.198249 4.423207 4.604686 6.144391 7.263505