Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01328 ATGGAAATTGATCTGAACCAAACAGCCAGTGAGGTGGGGAAGAATGCATATTGCTATGGAAATTGTGAAGAGGGTCTTTGCAATTGTTGTTTATCCTCCTCAACTTCTTCTTGTTCCTCAAATTCATCGTCAACTCCCGTCTCTTCTTCAACCTATTTGGAGCTTTGGCATGCTTGTGCTGGTCCTCTCACCTCATTGCCCAAGAAAGGAAATGTAGTTGTCTATTTCCCCCAAGGTCATTTGGAGCAAATTGCCTCGGCGTCTCCCTTTTCCCCCATGGAGATGCGCACGTTTGACCTTCAGCCACAGATCCTCTGCAGGGTCATCAATGTTCACCTACTCGCCAATAAGGAGAATGATGAGGTCTATACGCAACTTACTCTCCGTCCCTTGCCAGAGTTATTAGGCACTGGTGTAGCGGGCAAAGAGCTGGAGGAGTTGGCGTTGAATGGAGCTGATGGAGATGGGAGCGGGGGATCGCCTACTAGATCTACACCTCACATGTTCTGCAAAACACTTACAGCGTCTGACACCAGCACCCATGGAGGATTCTCTGTTCCTCGCAGAGCTGCTGAAGACTGTTTCCCTCCTCTGGATTACACTCAGCTTAGGCCGTCTCAAGAGCTAATAGCCAAGGACTTGCATGGCGTGGAGTGGAGATTTAGACATATTTACAGAGGTCAACCTAGGCGGCATCTGCTCACTACTGGATGGAGTATTTTTGTAAGCCAAAAGAATCTTATTTCTGGTGATGCAGTGCTCTTTTTAAGGGGTGAGAATGGAGAGTTAAGGTTGGGAATAAGGCGAGCTGTTCGGCCTAGAAATGGTCTTCCTGATTCAATTGTTGGCAACCAAAATTCTTGTGCAAATGATCTTGCTCGTGTGGTGAAAGCAATATCCACCAAGAGCACATTTGATGTGTTTTATAATCCAAGGGCATATCATGCACAATTTATTATATCTTGTCAGAAGTATGTGAAGAGCATCAATAATCCAATGAGTGTAGGCACAAGATTCAAAATGAGATTTGAGATGGATGATTCACCAGAAAGAAGGTTTAATGGTGTAGTTGTTGGAATTAGTGACATGGATTCCTTTAGATGGCCAAACTCAAAATGGAGATGCTTAACAGTCCGATGGGATAAAGACAGTGATCATCAAGAACGTGTGTCACCCTGGGAGATCGATCCTTCTGTTTCTCTCCCGCCTTTGAGTGTTCAGTCTTCTCCAAGGCTGAAGAAACTGAGAACTAGTCTGCAGGCAGCCCCGCCTAACAACGCCTTTACTGGGAGGGGCGGTTTTATGGACTTTGAGGATTCGGTTAGATCCTCTAAGGTCTTGCAAGGTCAAGAAAATGTAGGTATTGTATCACCCTTTTATGGATGTGATACTGTGAAACGTTCACTGGAGTTTGATGTGCGATCTTCTGCACAACAAAACCAAGTGCCAGGTGGAGTTGAAAAACTCAATATAGCTGATTATGTAAAGGTTCATGCGAACTCTTCTTTCACAGGCTTTATGGAATCTGATAGATTTCTGAAGGTCTTGCAAGGTCAAGAAATATGCTCATTGAGGCCACCGACTAGTAAACCAGAATATAGTTTAGGTGTTTGGGGAAAGTTCAATCTTAGTGACAACTCTTTTAACACATTTCAATCACCAAACTCCAATTTTTATCACATGGCGTCTAACAGCGCCCAAGAGATGTATTTCCCTCGTAGTGAGATGCACAGTACTGGCCAAGCGGCCATGATGCTCTCAAATGATAGAAACTTTCCAAGAGAGAGTGCCTTGTTCAACCCATCTGCTGTTGGTGCTAATGTTATCAGGACTAAAATGGAAAGGACTAATCGTTCTCTTGATCGGGAATCTCTACATCTAGTGTCTGCTCCTCCAACTTTAGGGTCGAATATGAGGAATTCCAAGGATGAAAATGTGAATGATAATGCAACTGGCTGTAAACTTTTTGGCTTTTCCTTGACTACAGAAACTGCTACAAACGTGCAAAGTTCAGGAAAGAGAAGTTGTACCAAGGTTCACAAACAAGGCAGCCTGGTGGGAAGAGCTATCGATCTCTCTAGGCTGAATGGCTATACTGATCTGATTTCAGAACTGGAGCGGCTGTTTAGCATGGAAGGTCTCTTAAAAGATCCCGATAAAGGATGGCGAGTTTTGTACACAGACAACGAGAACGATGTAATGGTTGTTGGGGATTATCCATGGCATGACTTCTGTGATGCGGTTTCGAAAATCCACATATACACTCAAGAAGAAGTGGAAAAGATGACAAATGGAGTGACCAGCGATGATACTCAAAGCTGCTTAGACCAGGCTCCTTTATGTATGGAAGCATCAAAATCCTCTTCAGTGGGCCAACCTGATTCTCCTCCAACAGCAGTAGGAGGTTAA 2409 44.21 MEIDLNQTASEVGKNAYCYGNCEEGLCNCCLSSSTSSCSSNSSSTPVSSSTYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQIASASPFSPMEMRTFDLQPQILCRVINVHLLANKENDEVYTQLTLRPLPELLGTGVAGKELEELALNGADGDGSGGSPTRSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYTQLRPSQELIAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLISGDAVLFLRGENGELRLGIRRAVRPRNGLPDSIVGNQNSCANDLARVVKAISTKSTFDVFYNPRAYHAQFIISCQKYVKSINNPMSVGTRFKMRFEMDDSPERRFNGVVVGISDMDSFRWPNSKWRCLTVRWDKDSDHQERVSPWEIDPSVSLPPLSVQSSPRLKKLRTSLQAAPPNNAFTGRGGFMDFEDSVRSSKVLQGQENVGIVSPFYGCDTVKRSLEFDVRSSAQQNQVPGGVEKLNIADYVKVHANSSFTGFMESDRFLKVLQGQEICSLRPPTSKPEYSLGVWGKFNLSDNSFNTFQSPNSNFYHMASNSAQEMYFPRSEMHSTGQAAMMLSNDRNFPRESALFNPSAVGANVIRTKMERTNRSLDRESLHLVSAPPTLGSNMRNSKDENVNDNATGCKLFGFSLTTETATNVQSSGKRSCTKVHKQGSLVGRAIDLSRLNGYTDLISELERLFSMEGLLKDPDKGWRVLYTDNENDVMVVGDYPWHDFCDAVSKIHIYTQEEVEKMTNGVTSDDTQSCLDQAPLCMEASKSSSVGQPDSPPTAVGG* 803
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19476458 19482954 - Chy11G199080.1 Chy11g01328 237089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01328 802 Pfam AUX/IAA family 534 759 IPR033389 -
Chy11g01328 802 ProSiteProfiles PB1 domain profile. 674 758 IPR000270 GO:0005515
Chy11g01328 802 CDD B3_DNA 167 269 IPR003340 GO:0003677
Chy11g01328 802 Pfam B3 DNA binding domain 169 270 IPR003340 GO:0003677
Chy11g01328 802 Pfam Auxin response factor 296 376 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Chy11g01328 802 Gene3D - 167 271 IPR015300 -
Chy11g01328 802 PANTHER AUXIN RESPONSE FACTOR 17 790 - -
Chy11g01328 802 Gene3D - 670 763 - -
Chy11g01328 802 ProSiteProfiles B3 DNA-binding domain profile. 169 271 IPR003340 GO:0003677
Chy11g01328 802 Gene3D - 333 402 - -
Chy11g01328 802 SUPERFAMILY DNA-binding pseudobarrel domain 163 280 IPR015300 -
Chy11g01328 802 SUPERFAMILY CAD & PB1 domains 676 753 - -
Chy11g01328 802 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 790 IPR044835 GO:0003677|GO:0006355|GO:0009725
Chy11g01328 802 SMART B3_2 169 271 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy11g01328 Chy-Chr11:19476458 Chy12g00362 Chy-Chr12:3963674 1.10E-17 dispersed
Chy01g01310 Chy-Chr1:16826589 Chy11g01328 Chy-Chr11:19476458 1.48E-22 transposed
Chy02g00267 Chy-Chr2:1738800 Chy11g01328 Chy-Chr11:19476458 5.75E-142 transposed
Chy02g02705 Chy-Chr2:29881835 Chy11g01328 Chy-Chr11:19476458 5.75E-29 transposed
Chy09g01305 Chy-Chr9:15000111 Chy11g01328 Chy-Chr11:19476458 4.73E-20 transposed
Chy11g01328 Chy-Chr11:19476458 Chy08g00839 Chy-Chr8:15901478 7.77E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18754 PF02362 B3 1.20E-20 CL0405 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01328 - - csv:101212503 1567.75