Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy11g01344 | ATGACCGCAATTACTCGAGCAAATCAGCGCAAGATCGAGACTGTAGTGGACACCAATTCCCCGAAGCGGAAACCGAGATCCAGTAGTGTGCAGAGGCAACGAAGCCCTGCCTCTACGCCGGTCAATTGGAAATCGCCTCGTCGGTGCCTTAATTCGAGTCCGAAAACCCCTCCAGAGAGCGATGGGAAAGCGGTTGATGGTGGCTTTTCTAACTCACTTACTTCACCGATAAGATGCTTGTTGAAGGACCTTATTGTCAAACCAGATTGGAATCCTAAAGATACCGAACATGTAAAAACTGCGAAAGAAGCATTGCACATATCGACAGCTCCAACAACAATCATGTGCCGTGAAGATGAACAAAGTAAAATCTTCAATTTCTGCAAGGCTAGTGTGGAGCAAGAAAAAGCTGGTAGTTTGTATGTTTGCGGGTGTCCAGGAACTGGCAAATCTTTGTCCATGGAGAAAGTGAAAGATCAGTTGGCCGCTTGGGCCGAACAGTCCGGTCTTCAGCTGCCAGACATTTTGTCCATAAACTGCACTTCCTTAGCTAATACATCCGATATTTTCACTAAGATCATGGGTGAAACCCAACCAAAAAAGAAAAGGAATGGCTCTTTAACTCCCTTGCAACATCTTCAACGCTTGTACTCCCAGAAGGCAGAGTCATCTTGCATGAAAATGAAGTTGATAATAGCTGATGAACTGGATTATTTAATTACAAAAGATAAAGCAGTGTTACATGATCTGTTTATGCTTACAACTTTCCCATTTTCAAGATGTATCTTGATAGGAATTGCAAATGCTATCGACTTAGCTGATCGCTTTCTTCCAAGACTTCAGGCATTGAATTGCAAACCTCAGGTTGTAACTTATAGGGCGTATTCCAAGGAACAGATCCTCAAAATTCTTCAACAAAGGTTAACTGGGCTTCCTTTCGTTGTCTTCCACTCGCAAGCACTGGAGCTTTGTGCTAGAAAAGTTGCAGCGGTGTCTGGAGACATGAGGAAAGCTCTATGTGTTTGCCGGAATGCCATTGAATTATTAGAGGTGGAGATCAAAGCATCCTCGAAGGAGCTGAACCATGATGACGCATGTGATACTTCAGCACCACCTGAGCCTGTCAAAAGATCAGAGTCTCAGATTGTGAGGTTGGACCATATGGCTGTGGCCTTATCTAAGACCTTTAAATCACCAGCAGTGGAAACCATACAATCTCTTCCTCAGCATCAACAGATCATTTTGTGCTCTGTTGTGAAACTTGTTCGCGGAGGAAAGAAGGATACAACTATAGGGGAGCTAAACAAATCATACATAGACATGTGTAAATCAACACTAATCCCACCAGTGGGTAGTTTGGAACTTTCAAATATGTTCATGGTGCTAAACGACCAGGGGCTTCTCAAACTTGGCCAATCTCGCGACAATAAAACGAGGCGTGTGTTGTTGAAAGTCGACGAAGCCGATGTCACATTCGCATTACAGGATTATAGGTACTATTCTTTACATGGCCATGTTGGGACCATGGCAAGGAGAATTCAACAGGGAGCTAATTCAGTTCAAGGGGTTGAAGCCACTCTATGGCAGGTGCCTGAGACATTGTCCGATGTGATACTGAAAAAGATCAAAGCTCCTCCAAAAGCAGATGATGTGCAAGAGATCCATCCAGAACAACTGGTGGAAGCAGATGGTTTTCTTTTCGGGTTTCCATCACGATTCGGGGTCATGGCTGCTCAATTCAAGGCGTTCTTTGATGCAACAAGTGAGATATGGCAGTCTCAAGCACTTGCTGGCAAACCTGCTGGAATTTTCTGGAGTACTGGTTTTCATGGTGGAGGTCAGGAGCTTACTGCATTGACAGCAATAACGCAGCTAGCACATCACGGTATGATATTTGTACCTCTTGGTTACACATTTGGGAGTAAGATGATGGAAATGAATGAGGTGAAAGGTGGCTCTCCTTATGGTGCTGGAACCTTTGCAGCCGATGGAACGCGACAACCGACTGAGTTGGAGCTTGAACAGGCCTTTTACCAAGAGAGAGCCATCGCAAGATCCCATTCGCAACCACATTCCGGCCTTAGGCTTAACAAAATCAAAGAAAAACACCTCTCTGTATCTCCCCTCCTCTGCCCTCCGATTCCGTCGCGCCCAATGAGCTCCGGTAGGATGGAGAGCCTATGGCGAGCTGCAACCGGCCAAGATCCGAGTCCGGAGGATTACAAAGGCGTCGAATTCTGGACCAGCCCCGAGCGAGCCGGCTGGCTCAACAAGCAAGGCGAATACCTAAGAACCTGGCGTCGCCGTTGGTTCGTTCTGAAACGAGGTAAACTCTTCTGGTTTAAGGACTCTATTGTTACTCGCGCTTCAATTCCACGCGGTGTTATCCCTGTCAATACCTGCCTCACCGTCAAAGGAGCTGAGGATATCCTCCATAAGCCTTGCGCCTTCGAACTCTCTACCACCGGTCAAGACACTATGTACTTCATCGCTGAGTCGGAGCGTGAAAAGGAGGAGTGGATCAATTCGATTGGGCGCTCGATAGTTCAGAATTCGCGATCGGTTACCGAATCTGAAGTTGTTGATTACGATAACAGGCGATGA | 2604 | 46.27 | MTAITRANQRKIETVVDTNSPKRKPRSSSVQRQRSPASTPVNWKSPRRCLNSSPKTPPESDGKAVDGGFSNSLTSPIRCLLKDLIVKPDWNPKDTEHVKTAKEALHISTAPTTIMCREDEQSKIFNFCKASVEQEKAGSLYVCGCPGTGKSLSMEKVKDQLAAWAEQSGLQLPDILSINCTSLANTSDIFTKIMGETQPKKKRNGSLTPLQHLQRLYSQKAESSCMKMKLIIADELDYLITKDKAVLHDLFMLTTFPFSRCILIGIANAIDLADRFLPRLQALNCKPQVVTYRAYSKEQILKILQQRLTGLPFVVFHSQALELCARKVAAVSGDMRKALCVCRNAIELLEVEIKASSKELNHDDACDTSAPPEPVKRSESQIVRLDHMAVALSKTFKSPAVETIQSLPQHQQIILCSVVKLVRGGKKDTTIGELNKSYIDMCKSTLIPPVGSLELSNMFMVLNDQGLLKLGQSRDNKTRRVLLKVDEADVTFALQDYRYYSLHGHVGTMARRIQQGANSVQGVEATLWQVPETLSDVILKKIKAPPKADDVQEIHPEQLVEADGFLFGFPSRFGVMAAQFKAFFDATSEIWQSQALAGKPAGIFWSTGFHGGGQELTALTAITQLAHHGMIFVPLGYTFGSKMMEMNEVKGGSPYGAGTFAADGTRQPTELELEQAFYQERAIARSHSQPHSGLRLNKIKEKHLSVSPLLCPPIPSRPMSSGRMESLWRAATGQDPSPEDYKGVEFWTSPERAGWLNKQGEYLRTWRRRWFVLKRGKLFWFKDSIVTRASIPRGVIPVNTCLTVKGAEDILHKPCAFELSTTGQDTMYFIAESEREKEEWINSIGRSIVQNSRSVTESEVVDYDNRR* | 868 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 19699618 | 19710032 | + | Chy11G199240.1 | Chy11g01344 | 237105 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy11g01344 | 867 | Gene3D | - | 285 | 404 | - | - | |
| Chy11g01344 | 867 | SMART | Cdc6_C_2 | 415 | 494 | IPR015163 | - | |
| Chy11g01344 | 867 | CDD | PH_AtPH1 | 752 | 858 | - | - | |
| Chy11g01344 | 867 | PANTHER | CELL DIVISION CONTROL PROTEIN 6-RELATED | 19 | 501 | - | - | |
| Chy11g01344 | 867 | CDD | Cdc6_C | 408 | 490 | IPR015163 | - | |
| Chy11g01344 | 867 | Gene3D | - | 498 | 689 | IPR029039 | - | |
| Chy11g01344 | 867 | CDD | AAA | 120 | 280 | - | - | |
| Chy11g01344 | 867 | ProSiteProfiles | Flavodoxin-like domain profile. | 495 | 683 | IPR008254 | GO:0010181 | |
| Chy11g01344 | 867 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 102 | 352 | IPR027417 | - | |
| Chy11g01344 | 867 | Pfam | CDC6, C terminal winged helix domain | 415 | 493 | IPR015163 | - | |
| Chy11g01344 | 867 | Pfam | AAA lid domain | 318 | 351 | IPR041083 | - | |
| Chy11g01344 | 867 | Gene3D | - | 94 | 284 | IPR027417 | - | |
| Chy11g01344 | 867 | ProSiteProfiles | PH domain profile. | 749 | 849 | IPR001849 | - | |
| Chy11g01344 | 867 | SMART | AAA_5 | 136 | 286 | IPR003593 | - | |
| Chy11g01344 | 867 | Pfam | AAA domain | 135 | 254 | IPR003593 | - | |
| Chy11g01344 | 867 | Pfam | NADPH-dependent FMN reductase | 507 | 636 | IPR005025 | GO:0016491 | |
| Chy11g01344 | 867 | SUPERFAMILY | Winged helix DNA-binding domain | 401 | 496 | IPR036390 | - | |
| Chy11g01344 | 867 | Pfam | PH domain | 751 | 847 | IPR001849 | - | |
| Chy11g01344 | 867 | MobiDBLite | consensus disorder prediction | 1 | 69 | - | - | |
| Chy11g01344 | 867 | SUPERFAMILY | Flavoproteins | 499 | 685 | IPR029039 | - | |
| Chy11g01344 | 867 | Gene3D | - | 405 | 495 | IPR036388 | - | |
| Chy11g01344 | 867 | Gene3D | - | 747 | 860 | IPR011993 | - | |
| Chy11g01344 | 867 | PANTHER | CELL DIVISION CONTROL PROTEIN 6 HOMOLOG | 19 | 501 | - | - | |
| Chy11g01344 | 867 | SUPERFAMILY | PH domain-like | 698 | 849 | - | - | |
| Chy11g01344 | 867 | SMART | PH_update | 750 | 851 | IPR001849 | - | |
| Chy11g01344 | 867 | MobiDBLite | consensus disorder prediction | 1 | 58 | - | - | |
| Chy11g01344 | 867 | TIGRFAM | flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV | 499 | 685 | IPR010089 | GO:0003955|GO:0010181 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy06g01780 | Chy-Chr6:21161070 | Chy11g01344 | Chy-Chr11:19699618 | 2.86E-89 | dispersed | |
| Chy11g00416 | Chy-Chr11:3980703 | Chy11g01344 | Chy-Chr11:19699618 | 1.51E-70 | dispersed | |
| Chy11g01344 | Chy-Chr11:19699618 | Chy04g00760 | Chy-Chr4:9669583 | 5.58E-29 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy11g01344 | K02213 | - | csv:101205741 | 935.636 |