Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01356 ATGATGTGTAATGGTTGCAATAGGAAATCTGCAAGCCCTAACTTCGTGATGGACGGTGGATTTAAACGAGGGGGATTGGGATTTTGCATCTCTGTTTTGCTTGAATTTTCAGCTACAGATGATTTGATTGGATTTAGGAGTGCTGTTGAGGAAGATGGTCATGATATTGATGAGGCGAGTTTGTGGTATGGGAGGATTTTTGGTTCTAAAAAGATGGGGTATGAAGAAAGGACTCCTCTTATGGTTGCAGCCATGTTTGGGAGCCTGAATGTTCTGTCTTATATCCTTCACAGTGGTCGTGTCGATGTTAATCGAGCTTGTGGTTCAGATGGCGTAACGACTCTTCATTGTGCTGTTGCTGGTGGTTCTGCTGTTGTGGATCAGGTTGTCAAACTCTTGCTTGATGCTTCCGCTGATGTAAGTGCTGTCGATGCTAACGGTAACCGGCCTGGTGATTTGATTGCTCCTGATTTTACTTCAGCCTTTTATTCAAGGAAAAAAACATTACAACAATTGCTAAATGGTCATGAAGAAGGTCTTAGTTCATCTGAGGCAATATTTTACGAGAGGGAAACGTTGGAGCCACTGGAGCTTTCAACCCTTCGAGCTTCACGAGATGGGACGGAGAAGAAAGAGTATCCAGTCGATCTCTCACTTCCAGACATCAAGAACGGAATCTATAGCACGGATGAGTTTAGAATGTATACTTTTAAGATCAAACCTTGTACAAGAGCTTACTCTCATGATTGGACAGAGTGTCCATTTGTTCACCCTGGTGAAAATGCAAGGAGGCGAGATCCAAGAAAATATCATTACAGCTGCGTCCCGTGTCCGGAATTCAGAAAAGGAACATGTAGGCAGGGGGATGCCTGTGAATATGCTCATGGAATTTTTGAATGTTGGCTCCATCCTGCTCAATATCGTACCCGTCTTTGCAAGGATGAAACCGGATGTACCAGAAAAGTCTGTTTCTTTGCTCACAAGCCAGAAGAGCTCCGCCCCTTGTATGCTTCAACCGGTTCTGCTGTACTGTCTCCAAGATCAATATGTGGTTCTTCACTAGACATCGCGTCGATCAGTCCACTTACCCTTGGTTCTCCTTCAGCTTTGATACCTCCTTCGTCAACTCCACCTTTAACTCCTTCTGGAGTTTCTTCTCCAATGGGTGGAACCATGTGGCAGACTCAGTGTAATATTGCTCCCCCAACCCTGCACCTTCCAGGTAGCAGGCTAAAGGCTTCCTTGAGCGCAAGAGACGTGGATTTAGATGTCGAGTTACTTGGTCTCGAAAGTCAACGCCGTAGACAACAGCAGCTAATGGATGAGATGTCCTGTCTACCTTCCCCTTCCAGATGGAACAATGGCTTACCAACTCCTGCATCTTTTCCTTCCCCAAGGAGTAGAAATGGAGAACTGAATGGACTTGGAGGCATGAAGCCGACTAACCTCGAGGACTTTTTCGGATCTGTAGATCCTGCAATTTATCCTCAATTACAAGGACTTTCATTGGATTCTGTGGGATCGCAGGTACAGTCCCCTTCTGGAATCCAGATGCGCCAAAGCCTCAAACAGTCTTTCCTCTCGAGCTTTGGTAACAGCATTGGATCCCCTCCTCCAAGGTTGTCTCAACCATCCGTGTCTACTGCAGCCAGCGTTTTGAGTTCTAGAGCTGCTGCTTTTGCTAAGCGTAGCCAGAGCTTTATCGAACGTAGTATGGTGAGCCGCCATACGGGACTATCACCCCCAGGTACATCCACAACTGCCATGCCTATGAACCTGTCTGATTGGGGTTCACCCGACGGAAAACTAGACTGGGGAATTCGTGGAGAAGAACTCAACAAGTTAAAGAAGTCTGCATCATTTGGGATTCGAAACAATTGCACCAGTTCTCCAGTGATGTCCACAATGCACACTACCGCTCCCGAGCCAGATGTTTCCTGGGTTCAGTCCCTGGTGAAGGATGCTCCATCCGAAAATGCTGTGCAGTTGAGTATGGACGAGCAGCAGCAGCTGCTTTGTCATCTCAATAATGGCGATTCGAAGCAAATGTACATGGAACAGGAACAGTTGGTTGCTTGA 2079 46.51 MMCNGCNRKSASPNFVMDGGFKRGGLGFCISVLLEFSATDDLIGFRSAVEEDGHDIDEASLWYGRIFGSKKMGYEERTPLMVAAMFGSLNVLSYILHSGRVDVNRACGSDGVTTLHCAVAGGSAVVDQVVKLLLDASADVSAVDANGNRPGDLIAPDFTSAFYSRKKTLQQLLNGHEEGLSSSEAIFYERETLEPLELSTLRASRDGTEKKEYPVDLSLPDIKNGIYSTDEFRMYTFKIKPCTRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGTCRQGDACEYAHGIFECWLHPAQYRTRLCKDETGCTRKVCFFAHKPEELRPLYASTGSAVLSPRSICGSSLDIASISPLTLGSPSALIPPSSTPPLTPSGVSSPMGGTMWQTQCNIAPPTLHLPGSRLKASLSARDVDLDVELLGLESQRRRQQQLMDEMSCLPSPSRWNNGLPTPASFPSPRSRNGELNGLGGMKPTNLEDFFGSVDPAIYPQLQGLSLDSVGSQVQSPSGIQMRQSLKQSFLSSFGNSIGSPPPRLSQPSVSTAASVLSSRAAAFAKRSQSFIERSMVSRHTGLSPPGTSTTAMPMNLSDWGSPDGKLDWGIRGEELNKLKKSASFGIRNNCTSSPVMSTMHTTAPEPDVSWVQSLVKDAPSENAVQLSMDEQQQLLCHLNNGDSKQMYMEQEQLVA* 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19834103 19836181 + Chy11G199360.1 Chy11g01356 237117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01356 692 Gene3D - 272 334 - -
Chy11g01356 692 SMART ANK_2a 110 142 IPR002110 GO:0005515
Chy11g01356 692 SMART ANK_2a 75 105 IPR002110 GO:0005515
Chy11g01356 692 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 296 IPR000571 GO:0046872
Chy11g01356 692 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Chy11g01356 692 PANTHER UNKEMPT FAMILY MEMBER 29 690 IPR045234 -
Chy11g01356 692 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 29 690 - -
Chy11g01356 692 ProSiteProfiles Ankyrin repeat region circular profile. 110 144 - -
Chy11g01356 692 SUPERFAMILY Ankyrin repeat 72 150 IPR036770 -
Chy11g01356 692 MobiDBLite consensus disorder prediction 447 467 - -
Chy11g01356 692 ProSiteProfiles Zinc finger C3H1-type profile. 276 298 IPR000571 GO:0046872
Chy11g01356 692 SMART c3hfinal6 271 297 IPR000571 GO:0046872
Chy11g01356 692 SMART c3hfinal6 306 329 IPR000571 GO:0046872
Chy11g01356 692 Pfam Ankyrin repeats (3 copies) 73 143 IPR002110 GO:0005515
Chy11g01356 692 Gene3D - 40 174 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00223 Chy-Chr7:1831517 Chy11g01356 Chy-Chr11:19834103 6.93E-55 dispersed
Chy04g01739 Chy-Chr4:23772606 Chy11g01356 Chy-Chr11:19834103 3.91E-163 transposed
Chy10g00408 Chy-Chr10:9756104 Chy11g01356 Chy-Chr11:19834103 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18758 PF12796 Ank_2 1.00E-06 CL0465 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01356 - - csv:101213761 1341.25