Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy11g01398 | ATGGAATTTTTTTTCTCCGCTACATTAGACGATCGTAGTGGCAGCGGCCGCCGAAGACAGCCGGACCTTGCGGTGGTGGCCATGGGTAATCCGCCGTTGTCTCCACCACTTTTTTCTCCTTCTTCCTTCTTCACTATTCCTCCTGGTATCAGCCCCACCCAATTACTTGATTCCCCTCCTCTTCTTCTCAACTCTTCTCGTATTCTGCTATCGCCGTCCACCGGAGATTTGAGAAAATCAACGAGTAACAATTCCGGCCACCACCAACAGAATGTCAAGCAAGAACACAACAACATTACTGAATTCTCATTTCCTCCTAATCACACCACAAAATCATCATCATCATCATCAATGTTTCAATCCTCTTCAACATCTCAGGTGCAAACTCAGGCATGGGATTTGGAATGGGAGAATGACGACCGGGGAGATCAATGGGGGATGAGGAACAGATCAGGATCTGAGGATGGGTTTAATTGGAGAAAATATGGGCAAAAAGTGGTAAAAGGAAGTGAAAATCCTAGAAGCTATTACAAATGCACATTCCCAAATTGCCCTGTTAGAAAACAAGTTGAAAGATCGTTGAATAACAATGGTCAAATTACTGAAATTGTTTACAAAAGTAAACATAACCATCCAAAACCAGACTTCACTAGAAGGTCATCTTCCTCTTTTTCTTCTTTTTCTTCATCCTCTTTTGAACCTGCGCAGCTAAAGAATTCAATACCCTCTCACTCTCTAACCACGCCGGAGAACTCTTCAATTACCGTTGGGGATGATCATTCCGACCAAGCTCATCCAAAAAGATGGAAAAGTGAGAGTAGTGAGAAGGAAGAAATGATAACAGGAGGAGGGGGGAAAACAATGAGGGAAGAAAGGATTGTAGTTCAAACAATTAGCAATGTGGATAAATTAGATGATGGTTACTGGTGGAGAAAATATGGACAGAAAGTGGTCAAGGGAAATCCAAATCCAAGAAGCTATTACAAATGCACATATCCAGGATGTGGAGTGAGGAAGCATATAGAGAGGGCATCCCATGATTTTAGAGCAGTTGTCACTACCTATGAAGGGAAGCACAACCACGATATTCCGACAGCCCGTGGCGGCAAACCAATACTTAGTAATAAGGGTAGAAATAATGAGGTTGTGTCGTCGAGCATTGGTGGTGATCCACGACTGAGTTCAGAGATTTGTAGTGCTACTAATGGATTATTGAAGTTCACAAACATGTCGTGGAAGAACAAAGAAGAGGTCGTCGATAATATATATGGGTTGTTATACTTAGGATGA | 1290 | 42.48 | MEFFFSATLDDRSGSGRRRQPDLAVVAMGNPPLSPPLFSPSSFFTIPPGISPTQLLDSPPLLLNSSRILLSPSTGDLRKSTSNNSGHHQQNVKQEHNNITEFSFPPNHTTKSSSSSSMFQSSSTSQVQTQAWDLEWENDDRGDQWGMRNRSGSEDGFNWRKYGQKVVKGSENPRSYYKCTFPNCPVRKQVERSLNNNGQITEIVYKSKHNHPKPDFTRRSSSSFSSFSSSSFEPAQLKNSIPSHSLTTPENSSITVGDDHSDQAHPKRWKSESSEKEEMITGGGGKTMREERIVVQTISNVDKLDDGYWWRKYGQKVVKGNPNPRSYYKCTYPGCGVRKHIERASHDFRAVVTTYEGKHNHDIPTARGGKPILSNKGRNNEVVSSSIGGDPRLSSEICSATNGLLKFTNMSWKNKEEVVDNIYGLLYLG* | 430 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 20393355 | 20398752 | + | Chy11G199780.1 | Chy11g01398 | 237159 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy11g01398 | 429 | MobiDBLite | consensus disorder prediction | 205 | 285 | - | - | |
Chy11g01398 | 429 | MobiDBLite | consensus disorder prediction | 260 | 285 | - | - | |
Chy11g01398 | 429 | SUPERFAMILY | WRKY DNA-binding domain | 151 | 214 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Chy11g01398 | 429 | PANTHER | WRKY TRANSCRIPTION FACTOR 33-RELATED | 32 | 385 | - | - | |
Chy11g01398 | 429 | MobiDBLite | consensus disorder prediction | 73 | 124 | - | - | |
Chy11g01398 | 429 | Pfam | WRKY DNA -binding domain | 305 | 362 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Chy11g01398 | 429 | Pfam | WRKY DNA -binding domain | 154 | 212 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Chy11g01398 | 429 | ProSiteProfiles | WRKY domain profile. | 154 | 214 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Chy11g01398 | 429 | MobiDBLite | consensus disorder prediction | 217 | 259 | - | - | |
Chy11g01398 | 429 | ProSiteProfiles | WRKY domain profile. | 299 | 364 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Chy11g01398 | 429 | SUPERFAMILY | WRKY DNA-binding domain | 296 | 364 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Chy11g01398 | 429 | Gene3D | WRKY domain | 291 | 357 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Chy11g01398 | 429 | Gene3D | WRKY domain | 146 | 215 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Chy11g01398 | 429 | SMART | WRKY_cls | 304 | 363 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Chy11g01398 | 429 | SMART | WRKY_cls | 153 | 213 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Chy11g01398 | 429 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 32 | 385 | IPR044810 | GO:0003700 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy10g01039 | Chy-Chr10:15648725 | Chy11g01398 | Chy-Chr11:20393355 | 1.25E-65 | dispersed | |
Chy11g01398 | Chy-Chr11:20393355 | Chy02g01672 | Chy-Chr2:16368321 | 8.92E-15 | dispersed | |
Chy11g01398 | Chy-Chr11:20393355 | Chy09g00217 | Chy-Chr9:1819693 | 1.11E-74 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
18762 | PF03106 | WRKY | 4.10E-26 | CL0274 | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy11g01398 | K13424 | - | csv:101205221 | 602.823 |