Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01436 ATGGTCGTTTCTTCGATACCCAAATTCTTCCCTCGACCTATTGCGATTCCTCTCTCGTTTCCTCCTCCCCTTTATCTCAAATGGGTCTCCACCTTCTCCACATTCGAATCTTCTCCACGCCCTCTCCAGAATCTTTCCTCATTCCTCAATGGCAGACCCTCAAGCAGCTCCTTGGATTGCGAGCTCTCCGTGGTCTCAGCCTTGAAGTACTGCGCCTCCAGTTCAGCCATTTCTTCAGGGCAACAAATCCATGCCATCGTTCTCAAATATGGGTTTAATTCGAATACTTTCATCCTTAATAGCTTGATCAATATGTATGTTAAATGTGGACTTCTTTCCAGTGCCAGATTGCTGTTTGATTCGTGTTCTGTCTTGGATTCTGTTTCTTGTAACATTATGATGTCTGGGTATGTAAAACTTCGCCAATTGGAGAACGCACGCCAGTTGTTCGCCAAAATGCCTGAAAGAGGCTGCGTCTCTTACACCACTATGATTTTGGGTTTGGCACAGAATGATTGTTGGGGAGAAGCAATTGAGGTTTTTAAGGATATGAGGTCTGCAGGTGTAGCCCCAAATGAAGTGACAATGGCAAGTGTTATGTCAGCGTGTTCACATATTGGTGGTATTTGGAATTGCCGGATGCTCCATGCACTGGTAATAAAGTTACATTTTTTTGGTCTTGTTCTTATTTCGACAAATTTGTTGCACATGTATTGTGTTTTTTCAAGTTTAAAGGATACTAAGAGATTATTCAATGAGATGCCAGTGCGTAATACTGTTTCATGGAATGTGATGTTAAAAGGGTATGTAAAATCAGGTCTTGTTGATCAAGCAAGAGAGTTGTTTGAGAGGATTCCAGAAAGAGATGTATTTTCTTGGGCTATAATGATTGATGGGTTTGTGCAAATGAAACGGTTAAGGAAAGCTTTGTTATTGTATTCTGCAATGAGAAAAAGTGATTTGCATCCCAATGAAGTGTTGATCGTTGATTTGCTTTCTGCTTTTGGGCAATCAGTTTCAATTGATGAAGGCAGGCAGTTTCATTCTTTGATTATTAAAAATGGTTTTGTTTGTTTTGATTTCATACAAGCAACTATTATTAGTTTCTATGCAGCTTGTAGAAGGATTGATCTTGCTTATTTGCAATATCAGATGAGTGATAAGAGTCATCTCACGTCTTCAAATGTCATGATTGTGGGCTTCACAAAGAACGGAATGATTGATCAAGCAAGACAAATATTTGATATGATGCCTGAAAAAGATGTTTTTTCGTGGAGCACCATGATTTCTGGTTATGCACAAAATGAGTTGCCTGATATGGCTTTAGAGCTTTTCCGTGGAATGATTGTTAGTAAAGTTGAGCCTAACGAGATCACCATGGTTAGCGTTTTCTCTGCGATTGCAGCTTTAGGTAAACTACCAGAAGGAAGATGGGCCCATGAGTATGTTTGCAACAAAGCCATTCCTCTTAATGATAATTTGAGTGCTGCAATCATTGACATGTATGCCAAATGTGGAAGTATCGACACTGCCTTAGATGTGTTCCATCAGATCAAAGACAAGACCTCTACCATCTCGCCATGGAATGCCATCATATGTGGATTGGCGATGCATGGGCATGCAAATCTATCTCTTGAAATATTTTCCAACTTGCAAAGACGGAGTATCAAGCTCAACTCGATTACATTTCTCGGGGTTCTCAGTGCTTGTTGCCATGCTGGATTGGTCGAGGTCGGGGAGAGATATTTCTGGAGCATGAAGACTCAACATGGTGTAGAACCAAACATTAAGCATTATGGATGTCTAGTGGATCTGTTAGGGAGGGTTGGGCGATTAAGGGAAGCAGAGGAAATTGTAAGAACCATGCCAATGAAGGCAGATGTTGTCATATGGGGCACATTATTGGCAGCATGTAGAACACACAGGGAAGTCGAAATAGGCGAAAGAGCTGCAGAGAATTTGGCTAGATTACAAGCGTCTCACGGGCCAGGTCGTGTCCTCCTATCTAACTTATACGCTGATGCAGGGTTGTGGGAAGATGCAGCCTTGGTTAGAAGAGCAATACAAAGTCAAAGGATGATAAGATCGCCTGGGTACAGTGGTGTTGTATGA 2112 41.52 MVVSSIPKFFPRPIAIPLSFPPPLYLKWVSTFSTFESSPRPLQNLSSFLNGRPSSSSLDCELSVVSALKYCASSSAISSGQQIHAIVLKYGFNSNTFILNSLINMYVKCGLLSSARLLFDSCSVLDSVSCNIMMSGYVKLRQLENARQLFAKMPERGCVSYTTMILGLAQNDCWGEAIEVFKDMRSAGVAPNEVTMASVMSACSHIGGIWNCRMLHALVIKLHFFGLVLISTNLLHMYCVFSSLKDTKRLFNEMPVRNTVSWNVMLKGYVKSGLVDQARELFERIPERDVFSWAIMIDGFVQMKRLRKALLLYSAMRKSDLHPNEVLIVDLLSAFGQSVSIDEGRQFHSLIIKNGFVCFDFIQATIISFYAACRRIDLAYLQYQMSDKSHLTSSNVMIVGFTKNGMIDQARQIFDMMPEKDVFSWSTMISGYAQNELPDMALELFRGMIVSKVEPNEITMVSVFSAIAALGKLPEGRWAHEYVCNKAIPLNDNLSAAIIDMYAKCGSIDTALDVFHQIKDKTSTISPWNAIICGLAMHGHANLSLEIFSNLQRRSIKLNSITFLGVLSACCHAGLVEVGERYFWSMKTQHGVEPNIKHYGCLVDLLGRVGRLREAEEIVRTMPMKADVVIWGTLLAACRTHREVEIGERAAENLARLQASHGPGRVLLSNLYADAGLWEDAALVRRAIQSQRMIRSPGYSGVV* 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21134773 21136884 + Chy11G200160.1 Chy11g01436 237197

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01436 703 Pfam E motif 641 702 IPR046848 -
Chy11g01436 703 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 61 154 - -
Chy11g01436 703 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 212 417 - -
Chy11g01436 703 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 276 700 - -
Chy11g01436 703 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 137 207 - -
Chy11g01436 703 Pfam PPR repeat family 159 204 IPR002885 -
Chy11g01436 703 Pfam PPR repeat family 420 466 IPR002885 -
Chy11g01436 703 Gene3D Tetratricopeptide repeat domain 227 377 IPR011990 GO:0005515
Chy11g01436 703 Pfam PPR repeat 99 120 IPR002885 -
Chy11g01436 703 Pfam PPR repeat 128 158 IPR002885 -
Chy11g01436 703 Pfam PPR repeat 291 320 IPR002885 -
Chy11g01436 703 Pfam PPR repeat 260 289 IPR002885 -
Chy11g01436 703 Pfam PPR repeat 497 521 IPR002885 -
Chy11g01436 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 421 455 IPR002885 -
Chy11g01436 703 TIGRFAM PPR: pentatricopeptide repeat domain 128 159 IPR002885 -
Chy11g01436 703 TIGRFAM PPR: pentatricopeptide repeat domain 260 290 IPR002885 -
Chy11g01436 703 TIGRFAM PPR: pentatricopeptide repeat domain 159 193 IPR002885 -
Chy11g01436 703 TIGRFAM PPR: pentatricopeptide repeat domain 423 457 IPR002885 -
Chy11g01436 703 TIGRFAM PPR: pentatricopeptide repeat domain 395 422 IPR002885 -
Chy11g01436 703 TIGRFAM PPR: pentatricopeptide repeat domain 291 325 IPR002885 -
Chy11g01436 703 Gene3D Tetratricopeptide repeat domain 383 494 IPR011990 GO:0005515
Chy11g01436 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 126 160 IPR002885 -
Chy11g01436 703 Gene3D Tetratricopeptide repeat domain 495 696 IPR011990 GO:0005515
Chy11g01436 703 Gene3D Tetratricopeptide repeat domain 60 156 IPR011990 GO:0005515
Chy11g01436 703 Gene3D Tetratricopeptide repeat domain 157 217 IPR011990 GO:0005515
Chy11g01436 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 161 191 IPR002885 -
Chy11g01436 703 Pfam Pentatricopeptide repeat domain 547 607 IPR002885 -
Chy11g01436 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 258 292 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01436 - - - csv:105435822 1356.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy11g01436 Chy-Chr11:21134773 Chy06g01009 Chy-Chr6:7656949 5.21E-43 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g422 . . . . Bpe04g01189 . . . . Cmo17g00263 . . . . . . . . . . . . . . Cla06g00540 . . . . . . . Cone15ag0813 . . . . Chy11g01436 . . . . . . . . . . . . . Cma17g00276 . Car17g00251 Cpe12g00229 . Bhi12g01792 . . . . . . . . . . . . . Lsi09g01362 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012333 1 1 0 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 2 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01436 Chy_Chr11 FPKM 102.195267 107.416885 45.027691 43.393742 69.155624 73.828079 70.804382 37.06279 39.424225 41.691101