Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01451 ATGTTGGAAGTTTCAATTATAGAGAAATTGGAACGGCAAGACTCTGCGAATATGGCTAGACACGGTCCTATTGAGATTCAAACGTCCGGAAGCAATGATTCAGGCGATATTGATACTCAAAATCAATCAAAAGATGAGACAAATCAAGCTACGGGGACTCCCAGTATAGGGAGCAGATCAAGACCGCGTGGATTCTCCGACTCTTTTGCTTCTCATGAGTTGAGATTATTAGATTTGGAAGATGAAACCAAAGATGTGGCATCTCCAAGAGGGGTGCTCGAAGATTGCTCGAGAAGTTTAGATTCTGAAACAACTACTTCTCGGGCCAGCACTTCCGATTGGGAAGGTCATCCGGACTCGAGAAATCCAAGTCATTGGAGAGGGTTCTTTCGTTTACTGAAGAAAGGACCTCAAATGCGATTTCAGACCTTTCCTCCTCTTAAAGCTGTTCCAAAACTCACCAGAAGAAAGAGCAAAAGAATTAGAGAGGATATGATTCCAGTAGTATCACCAGTGATGGACTCTTCTATAGAAACCGAGTTTTGCTATTTCAGATCTTCTTGGAAAAATTTCACACTTTCAGAGCTGGAAGCTGCTTGCAATAACTTCAGCCAAGAAAACTTGATTGGCGAGGGTGGTTATTCTGAAGTTTACAAGGGTCAGTTGGAAGATGGACAACTTGTCGCGATCAAGCGGCTTAATAGAGGTAGCCAAGAGGAGATGACTGCAGACTTCTTGTCTGAGCTTGGAATTATTGTTCATGTTGATCATCCTAATATCGCGAGCGTAATTGGGTACGGCGTTGAAGGGGGAATGCACCTTATACTTCATTTATCACCCCATGGGAGCCTGGCATCCATACTTTACGGGTCAAAGGAGAGACTGGATTGGTCAACCAGGTATAAGATTGCTCTTGGAATTGCTGAAGGCCTCCTTTATCTCCATGAAGGCTGCCAAAGAAGAATAATCCACAGAGACATTAAGGCCGCTAATATACTGCTTAGAGATGATTTTGAGCCTCAGATATCTGACTTCGGGCTTGCAAAGTGGCTTCCAGATCAATGGACTCACCATACTGTGTCAAAATTTGAAGGCACATTCGGGTACCTTCCTCCCGAGTTCTTTATGCATGGCATTGTTGATGAAAAAACTGATGTCTATGCCTATGGAGTGCTTTTATTGGAACTAATTACGGGACGACGAGCACTGGATAGCTTACAGCAAAGCCTTGTGATGTGGGCTAAACCCCTACTTTCTAAACAGAATCTCAAGGAACTTGTTGATTTATCTCTTGTCGACGCATTTGACACCGAACAAATGAAACGAATGGTATCAATAGCTTCAATGTGCATAAATCAATCTTCAATTCTACGGCCGGAAATGAGTGAGATTGTTCAAATTTTGAAAGGGGATGGAGTTGATAATTTGGAGCTTGTGAAACGACAGAAGTCTAAACTTCAAAGGACATACTCTGAAGAGCTTTTGGATGCCGAAGAATACAATTCTACCAAATATTTAAGTGATATCGATCGACATTTGGAGATTGTTTTAGGTACCTGTAATATTGATGTTTAG 1575 42.1 MLEVSIIEKLERQDSANMARHGPIEIQTSGSNDSGDIDTQNQSKDETNQATGTPSIGSRSRPRGFSDSFASHELRLLDLEDETKDVASPRGVLEDCSRSLDSETTTSRASTSDWEGHPDSRNPSHWRGFFRLLKKGPQMRFQTFPPLKAVPKLTRRKSKRIREDMIPVVSPVMDSSIETEFCYFRSSWKNFTLSELEAACNNFSQENLIGEGGYSEVYKGQLEDGQLVAIKRLNRGSQEEMTADFLSELGIIVHVDHPNIASVIGYGVEGGMHLILHLSPHGSLASILYGSKERLDWSTRYKIALGIAEGLLYLHEGCQRRIIHRDIKAANILLRDDFEPQISDFGLAKWLPDQWTHHTVSKFEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRRALDSLQQSLVMWAKPLLSKQNLKELVDLSLVDAFDTEQMKRMVSIASMCINQSSILRPEMSEIVQILKGDGVDNLELVKRQKSKLQRTYSEELLDAEEYNSTKYLSDIDRHLEIVLGTCNIDV* 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21314192 21317567 + Chy11G200310.1 Chy11g01451 237212

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01451 524 MobiDBLite consensus disorder prediction 98 113 - -
Chy11g01451 524 PANTHER OS08G0249100 PROTEIN 47 506 - -
Chy11g01451 524 ProSitePatterns Protein kinases ATP-binding region signature. 209 231 IPR017441 GO:0005524
Chy11g01451 524 MobiDBLite consensus disorder prediction 87 121 - -
Chy11g01451 524 SUPERFAMILY Protein kinase-like (PK-like) 183 468 IPR011009 -
Chy11g01451 524 MobiDBLite consensus disorder prediction 14 65 - -
Chy11g01451 524 Gene3D Phosphorylase Kinase; domain 1 168 277 - -
Chy11g01451 524 ProSiteProfiles Protein kinase domain profile. 203 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy11g01451 524 ProSitePatterns Serine/Threonine protein kinases active-site signature. 322 334 IPR008271 GO:0004672|GO:0006468
Chy11g01451 524 MobiDBLite consensus disorder prediction 22 65 - -
Chy11g01451 524 SMART serkin_6 203 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy11g01451 524 Pfam Protein tyrosine and serine/threonine kinase 206 468 IPR001245 GO:0004672|GO:0006468
Chy11g01451 524 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 ISOFORM X1 47 506 - -
Chy11g01451 524 Gene3D Transferase(Phosphotransferase) domain 1 280 491 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01451 - - - csv:101216575 1035.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00003 Chy-Chr5:31112 Chy11g01451 Chy-Chr11:21314192 1.13E-163 dispersed
Chy05g01150 Chy-Chr5:15966648 Chy11g01451 Chy-Chr11:21314192 1.37E-174 dispersed
Chy06g01595 Chy-Chr6:18322521 Chy11g01451 Chy-Chr11:21314192 5.80E-143 dispersed
Chy11g01451 Chy-Chr11:21314192 Chy11g00026 Chy-Chr11:363731 2.51E-76 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g390 . Blo12g00063 . . Bpe04g01182 . Bma04g01062 . Cmo08g01162 . . . . . . . . . . . . . . . Cla06g00524 . . . . . . . Cone15ag0801 Cone7ag0189 . . . Chy11g01451 . . . . . . . . . . . . Cma08g01190 Cma17g00290 Car08g01067 Car17g00266 Cpe12g00242 Cpe17g00108 Bhi12g01765 . . . . . . . . . . . . . Lsi09g01380 . . Cme11g01956
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009081 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 0 1 1 2 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71576 PF07714 PK_Tyr_Ser-Thr 9.50E-42 CL0016 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01451 Chy_Chr11 FPKM 2.029625 1.592852 0.565094 1.149942 4.799589 4.458045 4.79636 0.0 0.0 0.0