Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01462 ATGGCAACAGTTCAGCCACTTTCAAATGGGGTTTCTGAGATTACTCAAGAGGAAGACGCCGAGATTGTAAAATCTGTAAATGAACAAACTTCAGATACTGGACATAGTAGTAGACGCCCTGATATTTCACTTCAAATACCCCCAAGATCGACAGGCTTTGGTAAAAGCCGTAGTGGAAAAGGTTTACTGCAATCTCAAGGTTCCAACAAAGGTGGTTTGTCTCCAGGAAGCTTCTTAAGGGCTTTAAGCTTTAAGAGAAAAGGCATTGCTCCTGAAGGTGAGAAAAGTACACTCCTAAGTTCAGACCCAAAGACTGCTGCTGAAAGTCCGATATCAACGATCGCTTCAGCCTTTTCGTGGAAAAAGTCCACCTCTCTCCCAGTTACTCCAGCATCAAACTTGTCCCCCTTGATTCCCCTCCCCGCCACAACTAGTACAATCATTGAAAAGACAATCCCACATAAAGAAGCTGTGCGTGCCGTTTCGAGATCTCTATCTGTGCCTGTAAGAAATATCGTTATAGTACGATCTACATCTTTTGCTACCCCTAGGCCAATTTCTGAGGCCAGTGCCAGTTCTGATCAGGATGGTTCTGTTACCTTAGAAAATGATGATGAAGAAATTCCTGAAGAGGAAGCAGTTTGTAGAATCTGTCTCGATCCATGTGAAGAAGAAAACACTCTTAAAATGGAATGCAGTTGCAAAGGAGCCCTTAGGCTTGTACATAAACATTGTGCAATAGAATGGTTTAGTATAAGAGGAAACAAGGTGTGTGAAGTTTGTAGGCAGGAAGTACAGAATTTACCCGTCACACTACTCCGCATTCCCACCACTGCTCAACAGGACGGAAGACAATTGCGAAATCAACTGACATTTCGTTCGCGGACAGTAAGTGTTTGGCAGGACTTTGTGGTGCTTGTTTTAATCAGCACAATATGCTATTTCTTCTTCCTTGAGCAGCTTCTGATTCACGACTTGAAGACTCAAGCTATCGTTTATGCTGCACCTTTTGCTCTGGTGTTTGGTCTCACATCATCGATATTCTCTGTTATCCTTGCAATCAAGGAGTATATATGGACTTATGCAGCTCTTGAGTTTGCACTTGTAGCTATTATTCTTCATCTTTTCTATACTTTGCTGAAACTGAAGGCCATATATGCCATTTTGCTGTCTGCAATCTTGGGTTTTGGTGTGGCTATGAGTTTGAATGCTGTATACATTCATTACTACATTTGGCGAGTTCGAATCGCACAGAATCCCAACCCAGCATGA 1272 42.53 MATVQPLSNGVSEITQEEDAEIVKSVNEQTSDTGHSSRRPDISLQIPPRSTGFGKSRSGKGLLQSQGSNKGGLSPGSFLRALSFKRKGIAPEGEKSTLLSSDPKTAAESPISTIASAFSWKKSTSLPVTPASNLSPLIPLPATTSTIIEKTIPHKEAVRAVSRSLSVPVRNIVIVRSTSFATPRPISEASASSDQDGSVTLENDDEEIPEEEAVCRICLDPCEEENTLKMECSCKGALRLVHKHCAIEWFSIRGNKVCEVCRQEVQNLPVTLLRIPTTAQQDGRQLRNQLTFRSRTVSVWQDFVVLVLISTICYFFFLEQLLIHDLKTQAIVYAAPFALVFGLTSSIFSVILAIKEYIWTYAALEFALVAIILHLFYTLLKLKAIYAILLSAILGFGVAMSLNAVYIHYYIWRVRIAQNPNPA* 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21380668 21385348 + Chy11G200420.1 Chy11g01462 237223

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01462 423 MobiDBLite consensus disorder prediction 26 73 - -
Chy11g01462 423 ProSiteProfiles Zinc finger RING-CH-type profile. 207 268 IPR011016 GO:0008270
Chy11g01462 423 PANTHER ZINC FINGER PROTEIN 1 422 - -
Chy11g01462 423 MobiDBLite consensus disorder prediction 1 15 - -
Chy11g01462 423 MobiDBLite consensus disorder prediction 1 74 - -
Chy11g01462 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 269 IPR013083 -
Chy11g01462 423 SMART ringv_2 214 262 IPR011016 GO:0008270
Chy11g01462 423 PANTHER OS02G0165000 PROTEIN 1 422 - -
Chy11g01462 423 ProSiteProfiles Zinc finger RING-type profile. 215 262 IPR001841 -
Chy11g01462 423 MobiDBLite consensus disorder prediction 185 205 - -
Chy11g01462 423 CDD RING_CH-C4HC3_MARCH 215 262 - -
Chy11g01462 423 Pfam RING-variant domain 215 261 IPR011016 GO:0008270
Chy11g01462 423 SUPERFAMILY RING/U-box 211 265 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01462 - - - csv:101219282 761.911
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00063 Chy-Chr1:467864 Chy11g01462 Chy-Chr11:21380668 1.79E-12 dispersed
Chy11g01462 Chy-Chr11:21380668 Chy12g00882 Chy-Chr12:14177726 2.06E-49 dispersed
Chy11g01462 Chy-Chr11:21380668 Chy11g00806 Chy-Chr11:11573442 1.76E-73 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g377 . . . . . . . . Cmo08g01171 Cmo17g00289 . . . . . . . . . . . . . . Cla06g00513 Cam06g0551 Cec06g0551 Cco06g0558 Clacu06g0537 Cmu06g0537 Cre06g1305 Cone14ag0794 Cone15ag0795 . . . . Chy11g01462 . . . . . . . . . . . . Cma08g01198 Cma17g00301 Car08g01074 Car17g00276 Cpe12g00253 Cpe17g00101 Bhi12g01749 . . . . . . . . . . . . . Lsi09g01389 . . Cme11g01968
Vvi12g94 . . . . . . . . . . Cma02g00089 . . . . . . . . . . . . . . . . . . . . . . . . . . Chy11g01462 . . . . . . . . . . Cmo02g00089 . . . . . Cpe16g00771 . Bhi10g01105 . . . Hepe08g0557 . . Cla11g01629 Cam11g1695 Cec11g1721 Cco11g1719 Clacu11g1852 Cmu11g1665 Cre11g2080 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005455 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 4 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01462 Chy_Chr11 FPKM 44.597588 50.696438 36.992359 34.495846 26.61808 26.633846 24.885155 48.8344 48.993031 49.198792