Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01463 ATGGCTCCCTTTGGGAGTGATCGCGTGGACATTGATCGTACGGATACCGAAGTATTTGACGGCTATCTTTCACCACCTACGTGTTCTGGTGAGGAAACGGATAAACCTTCATATTCTTCAGGAACTGTTGATTTCTATGATGACGAGTTTGAAACTCAAGTAGTGAATCTTGATGGAGAAACTCAAGTAGTGGAGCCTGTAAATGATGATTTTGAAACTCAATTAGTGAATCCCCTTGAAGAAACTCAAGTTTTTGATGTTGCATATGAAACCCAAATATTGAGTCTCTGTGATGAAACCCAGCTACTTGATGATCCCATTCCTGATTGCGTAAAGAATATGGACTTTGACACTCTAATATTGAATGATTTTGAAGATGAAATGGCTGGTAATGATTTTTATGATGATGAAGGAACAGAGACAACTGAAATTAATGTTGATGACAATTTACCTGATGATGAATCAGCGCAAAGTTTTGATCAATCAGTGGAGGAGAAGGGCCAATCGACCTCTTCTCTTGGATATGATGCAAGGAAAGATTTAGAGGTGCTACCGAATACATTGCCTGAAAAAATTTGGAACTCAGGTCCCACACGACTTTCTTCATTGCGAACAGCCTCTTTGCGTGCCTCTGGTTTAGCAGCCTGTTGTTCTGCCATGAAAACTAGAGATGCTTGGCCTTCTGTTACAATTGACAAGGATAAAGAAAAATCATCCTTAAAAGATAATCATGTTGACCGGCATAACGGTGTTGGGCAATCCAGTGTGAATGATGGAGATTCAGGTAATGTTAAGTGCAGGGTTGGGAGTTCAGCAGTGAGAAAGCTTTTTACAGATGATTATACCCCTGTGGGAGATTTTGGAGATCTTCCCACAAAGCTTGATGCTAGTGACGTTGACCTACATCAGTTGACTGCCTGTGATGGCGATGGTGATCAGTTGGCAGGGTTAAGCTATGTTGACTCTCAAGAACCTGGGGATTTAACACAAGACAATGCTCTTGATTTTGTTGAAAAGTTTCTTAACGATAATTCTATTGAGTTTGGTCTAGGTGTAGGTATGCATAAACAGAATGCTATGGTGCAACCAAAGTCAGTTCCTAATTCAAGAGGACAATATAATCTGGCTAACATTGTTAACTGTGTAAGAGTAGTTGGAGAATCAAGAGTTTTTGACTGGGACGATAATCGGGAAGATGAAGGAGGTGGTGATATTTTCCGCAGAAGGAAAGAAGAGTTTTTGACCGAACCTCGAAAATCGAAAGGAAGAAAATTAGACCTGAGCAGTGATAAGGAAGCATCTTTGAATACCCAAAATATGAAATCAAGATTATTTTGTTCTGATTCTCGTCTAGAGTTGAGAAAAGGGAAAGGGAATAATGAGCCATCCCGAGAAGCCAATATCAAATGCAAAAGGAATCTATCCTATAAGTTGGATAAGGAGAATGATGGTGATCCATGTAGGGGAGAGTTGCAAAACAATGGCATCCAGCCTGATCAACAAGAAGACGCTAATGTAGGTTTTGATACTCAGATGGCAGCAGAGGCAATGGAAGCATTATTCAATGATGCGAATATCCATGAGTTAGTTCATAATGAAACAATTCAACATTTGGAAAATGGTTCAACAGATTCTTTCAGAGGTTCTCCTTGTAGAAAGTCATACTCAAGCTTGAAATTGAGACGATCCTCGAGGGGACATGCCTCTAGTTCCGAGGTTGCTCCTATGCAATCCGAGATAAGAAACCAGAAGTTTTCTGGAGTTATCATGAAAGCGTGTGGAAATGAGATAGTGAAATTGTCGAACAGGAGTAAGAAAAGAGATGCTGATGCAATCAATGGGCATGAAAACATTGGCTATGACTTAAAAAATGCATGTAACAAGGTTCAGAAGCGGCTTTTACGTGGAAAAGTTGTTGAGGTTTCACCTGTTGCATGTCGAACTAGGCATTCAATGATTGTAAATCAATCAAAAAAGGCTAAAATTGCATCTAGTGGATGTGAACGATCAGCTGCAAAGGTAGGTTCGTTTATCAAGAAAAGCAGTGGTGATCGGGGCACTAGGGATTTTGAAGCAAGGAGAACAAAATCTCTGGAGGCAGCATCCAAGACTCTCAATTTGAAGTCAAAAGGTGCCAAAAACGATGCAAAAAGGTCCATGGGAGAACGAGGATTGTGTGATATGTTAGCTGGTGAGGCAAGTCTGCCTGGTGATCTACTGGGACAAACTATGAATAGGCGCAAGAGGTCATGTAATGTGAAGAAAACACGAGCCTCATTATGTCTTCTTTCTCCTCCTTTAAATCAAAACTTGAAAAGACCAACTGTTGGCAGAACGGGTGCAGAAAAAGCTCATGGTGGAACTATAACTGCTGATATGAATGGTCAATTGTCCATTGAAGATTCCAATCGGCCAAATTCCGTTCAGCAGTTAAATAAAAAGAATGATGGATGTTCAGTTTCTTCTGTTGTAAAGACTACGCCAGATGAATCTTCTAGTAAAAGGCACAAACCATCTGTCACGGTTTGTACTAGTCCACCTGATAACTCTATGACACCTATAAATTCTGTATCACCTGTTTGTATGGGCAGTGAATATTACAAACAATCATGCAAAAAGAACCTCTCAAAATCAAGTCTTTTGAAAGAACTTCGTGATTTAACTGCTTCGGGTTTTGTATCGAGATCTTGTCCAACTGAATCAAGAAAGAGAAAAGATATGACTGATGTTCGAGTCTTGTATAGCCAACACCTTGATGAGGGCTTAATCAAACAGCAAAAAAAGACATTGACTCGCCTAGGGGTTACTGTGGTATCCTCCATGGCTGAGGCAACACATTTCATAGCGGATAAATTTGTACGGACGAGGAATATGTTAGAAGCCATTGCTCTGGGCAAGCTTGTGGTGACACACCTATGGATTGATAGTTGTGGACAGGCAAGCTGCTTCATTGACGAAAAAAATCACATCCTTCGAGACTCAAAAAAGGAGAAGGAACTTGGATTTAGCATGCCAGGTTCGTTGGCGTGTGCTCGCCAGCGTCCTCTTCTAGAGGGTCGACGAGTGTTGATTACGCCAAATACAAAGCCTGGGATAGCCATCATTTCAAGCTTGGTCAAGGCGGTAAAGGGTCAAGCAGTAGAGAGGATCGGGAGGTCTATGCTGAAAGATGATCAAATTCCAGATGATTTGTTAGTTTTGTCGTGTGAAGAAGATTACAATACGTGCTTGCCTTTTCTCGAAAAAGGTGCTGCAGTGTATAGTTCGGAGCTGCTACTTAATGGGATCGTAACGCAGAAGCTTGAGTTTGAAAGGCACCGTCTTTTTGTAGATCACGTCAAGAGGACTCGTTCGACAATATGGCTCAAGAAAGATGGCAATAAGTTCCAACCTGTTACCAAACATCAATGA 3411 41.01 MAPFGSDRVDIDRTDTEVFDGYLSPPTCSGEETDKPSYSSGTVDFYDDEFETQVVNLDGETQVVEPVNDDFETQLVNPLEETQVFDVAYETQILSLCDETQLLDDPIPDCVKNMDFDTLILNDFEDEMAGNDFYDDEGTETTEINVDDNLPDDESAQSFDQSVEEKGQSTSSLGYDARKDLEVLPNTLPEKIWNSGPTRLSSLRTASLRASGLAACCSAMKTRDAWPSVTIDKDKEKSSLKDNHVDRHNGVGQSSVNDGDSGNVKCRVGSSAVRKLFTDDYTPVGDFGDLPTKLDASDVDLHQLTACDGDGDQLAGLSYVDSQEPGDLTQDNALDFVEKFLNDNSIEFGLGVGMHKQNAMVQPKSVPNSRGQYNLANIVNCVRVVGESRVFDWDDNREDEGGGDIFRRRKEEFLTEPRKSKGRKLDLSSDKEASLNTQNMKSRLFCSDSRLELRKGKGNNEPSREANIKCKRNLSYKLDKENDGDPCRGELQNNGIQPDQQEDANVGFDTQMAAEAMEALFNDANIHELVHNETIQHLENGSTDSFRGSPCRKSYSSLKLRRSSRGHASSSEVAPMQSEIRNQKFSGVIMKACGNEIVKLSNRSKKRDADAINGHENIGYDLKNACNKVQKRLLRGKVVEVSPVACRTRHSMIVNQSKKAKIASSGCERSAAKVGSFIKKSSGDRGTRDFEARRTKSLEAASKTLNLKSKGAKNDAKRSMGERGLCDMLAGEASLPGDLLGQTMNRRKRSCNVKKTRASLCLLSPPLNQNLKRPTVGRTGAEKAHGGTITADMNGQLSIEDSNRPNSVQQLNKKNDGCSVSSVVKTTPDESSSKRHKPSVTVCTSPPDNSMTPINSVSPVCMGSEYYKQSCKKNLSKSSLLKELRDLTASGFVSRSCPTESRKRKDMTDVRVLYSQHLDEGLIKQQKKTLTRLGVTVVSSMAEATHFIADKFVRTRNMLEAIALGKLVVTHLWIDSCGQASCFIDEKNHILRDSKKEKELGFSMPGSLACARQRPLLEGRRVLITPNTKPGIAIISSLVKAVKGQAVERIGRSMLKDDQIPDDLLVLSCEEDYNTCLPFLEKGAAVYSSELLLNGIVTQKLEFERHRLFVDHVKRTRSTIWLKKDGNKFQPVTKHQ* 1137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21386383 21393456 - Chy11G200430.1 Chy11g01463 237224

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01463 1136 MobiDBLite consensus disorder prediction 561 576 - -
Chy11g01463 1136 MobiDBLite consensus disorder prediction 234 263 - -
Chy11g01463 1136 MobiDBLite consensus disorder prediction 144 172 - -
Chy11g01463 1136 Pfam Regulator of Ty1 transposition protein 107 BRCT domain 897 990 IPR001357 -
Chy11g01463 1136 SMART BRCT_7 904 981 IPR001357 -
Chy11g01463 1136 Gene3D BRCT domain 899 1012 IPR036420 -
Chy11g01463 1136 MobiDBLite consensus disorder prediction 234 248 - -
Chy11g01463 1136 MobiDBLite consensus disorder prediction 557 576 - -
Chy11g01463 1136 CDD BRCT_MDC1_rpt1 923 984 - -
Chy11g01463 1136 ProSiteProfiles BRCT domain profile. 902 991 IPR001357 -
Chy11g01463 1136 SUPERFAMILY BRCT domain 899 1007 IPR036420 -
Chy11g01463 1136 Gene3D BRCT domain 1013 1116 IPR036420 -
Chy11g01463 1136 MobiDBLite consensus disorder prediction 155 172 - -
Chy11g01463 1136 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 68 1116 - -
Chy11g01463 1136 MobiDBLite consensus disorder prediction 811 848 - -
Chy11g01463 1136 PANTHER BRCT DOMAIN-CONTAINING PROTEIN-RELATED 68 1116 - -
Chy11g01463 1136 CDD BRCT_PAXIP1_rpt6_like 1016 1102 - -
Chy11g01463 1136 MobiDBLite consensus disorder prediction 811 828 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01463 K20780 MDC1; mediator of DNA damage checkpoint protein 1 - csv:101217520 2099.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01602 Chy-Chr1:21964858 Chy11g01463 Chy-Chr11:21386383 7.62E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g376 . Blo12g00044 Bda03g01216 . . . Bma04g01089 . Cmo08g01172 Cmo17g00291 . . . . . . . . . . . . . . . . . . . . . Cone14ag0793 Cone15ag0794 . . . . Chy11g01463 . . . . . . . . . . . . . . Car08g01075 Car17g00277 Cpe12g00254 Cpe17g00100 Bhi12g01748 . . . . . . . . . . . . . . . . Cme11g01969
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010432 1 1 1 1 1 1 2 0 1 1 0 1 0 1 1 2 1 3 2 1 1 1 1 1 1 0 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01463 Chy_Chr11 FPKM 85.39032 92.905937 64.28653 68.153168 76.150925 80.761002 76.289764 51.945286 53.575603 53.900402