Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01467 ATGCCTTCTCTATCCGCTTCACTCAATCAAAGCCAGGTGACTAGCGGCCGAATCTCAGGTTTGAAATTAGTTCCCGCGCCTTTAGGCAAGGCCATTTTTCCCTTGCGAAGGAACTACAGGCTGGGAAACCTTCAGGTTTGCAGTGCGGCGAAACCAGAGACAGTGGACAAGGTGGTTGAAATTGTGAGGAAGCAGCTTGCTTTAGCTGAAGATTCTAAGGTCGATGGAGAATCTAAGTTTACTGACCTCGGTGCTGATTCTCTTGATACGGTTGAGATAGTGATGGGACTTGAAGAGGAATTTAAGATCAGCGTTGAGGAAGAGAGTGCCCAAAGCATCACTACCGTCCAGGAGGCTGCCGACCTCATTGAGGACCTCATTTCTAAGGATTCTGCCTAA 399 48.37 MPSLSASLNQSQVTSGRISGLKLVPAPLGKAIFPLRRNYRLGNLQVCSAAKPETVDKVVEIVRKQLALAEDSKVDGESKFTDLGADSLDTVEIVMGLEEEFKISVEEESAQSITTVQEAADLIEDLISKDSA* 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21414239 21417381 - Chy11G200470.1 Chy11g01467 237228

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01467 132 PANTHER ACYL CARRIER PROTEIN 11 131 IPR044813 GO:0000036|GO:0006633
Chy11g01467 132 Pfam Phosphopantetheine attachment site 56 123 IPR009081 -
Chy11g01467 132 Gene3D - 50 130 IPR036736 -
Chy11g01467 132 PANTHER ACYL CARRIER PROTEIN 11 131 - -
Chy11g01467 132 SUPERFAMILY ACP-like 51 130 IPR036736 -
Chy11g01467 132 ProSiteProfiles Carrier protein (CP) domain profile. 52 127 IPR009081 -
Chy11g01467 132 TIGRFAM acyl_carrier: acyl carrier protein 53 125 IPR003231 GO:0006633
Chy11g01467 132 Hamap Acyl carrier protein [acpP]. 53 127 IPR003231 GO:0006633
Chy11g01467 132 ProSitePatterns Phosphopantetheine attachment site. 82 97 IPR006162 -
Chy11g01467 132 SMART Phosphopantetheine attachment site 55 127 IPR020806 GO:0031177
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01467 - - - csv:101217997 237.654
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02145 Chy-Chr1:26098747 Chy11g01467 Chy-Chr11:21414239 8.53E-22 dispersed
Chy11g01467 Chy-Chr11:21414239 Chy12g00602 Chy-Chr12:8562558 7.77E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g369 . . . . . Bpe14g01151 . . . Cmo17g00295 . . . . . . . . . . . . . . Cla06g00507 Cam06g0547 Cec06g0547 Cco06g0555 Clacu06g0533 Cmu06g0532 Cre06g1301 Cone14ag0788 Cone15ag0789 Cone7ag0182 Cone4ag0177 . . Chy11g01467 . Blo02g00577 Blo07g00190 Bda11g00543 . . Bpe13g00646 . Bma06g01520 . . . Cma08g01200 Cma17g00305 Car08g01078 Car17g00281 Cpe12g00257 Cpe17g00097 Bhi12g01745 . . . . . . . . . . . . . Lsi09g01393 . . Cme11g01973
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008190 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 2 1 0 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01467 Chy_Chr11 FPKM 11.173386 13.270918 4.156632 4.607485 4.062436 3.261656 3.715271 9.940278 8.50303 8.947613