Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01469 ATGTCTCTCAAGACCATCTTCCAAGATATGAGGTCCCGCTCCCGCTGCGTCGTCCAGGACGCCTCCGCTCCGCCCCCCACCGATGCCCTCGACCAGAGCTGTTGGGCCAATATGCCTCAGGAGCTTCTTAGGGAGGTTTTGATGAGAATCGAGGCCTCCGAGACCTCTTGGCCCTTCAGGAAGAGTGTCGTCGCTTGCGCCGGAGTGTGTCGGAGCTGGCGAGCCATTACTAAGGAGATCGTTAAAACGCCGGAACTTTCTGGTAGGTTGACGTTCCCGATCTCTATTAAGCAGCCTGGTTCAAGGGATCCTCTTCTACAGTGTTTCATAAAGCGAAACAGATCAAATCAAACTTATTATCTCTTCCTCAGTTTGACAAGTGCACTAACTGATGATGGTAAATTTCTACTTGCTGCACGCAAATGCAAGCGCCCGACCTACACAGATTACATTATCTCTTTACATGCTGAGGATTTGTCAAAGGGGAGCAGCACCTATGTTGGGAAATTGAGATCTAACTTTCTAGGAACCAAGTTCACAATCTTCGATGGGCAACCACCACATTCTGGAGCCAAGATCATGAAAAGTCGCTCCACAAGGCTAGTGAATCTGAAACAAGTTTCGCCCAAGGTCCCTGCAGGAAACTATCCAGTTGCACACATTTCATATGAACTAAATGTGTTGGGATCAAGGGGTCCGAGGAGAATGCAGTGTATCATGGACGCTATTCCCGCTTCAGCAGTTGAACTTGGAGGAGTGGCTCCCACGCTAACTGAGCTTTCTTTGAGCAACGTGGAATTGTTCCCGTCCTTCCCCTTTCTGAGGTCAAAATCAAATGCTGATAGCTTACTTTCTGAACCTTTGGGGAGTCAGAAAGATGGAATGTTGGTGCTGAGAAACAAAACACCCAGATGGCACGAGCAGCTTCAGTGCTGGTGTCTGAACTTTCATGGAAGAGTGACAATTGCTTCTGTAAAAAACTTTCAACTAGTTGCTTCTCCCGAAAATGATCCTCCTACAGCAGAAAACGAGAAGATCATCCTTCAGTTTGGAAAAGTGGGGAAGGATTTATTCACAATGGATTATCGTTACCCAATCTCCGCTTTCCAGGCTTTCGCAATCTGCCTCAGCAGTTTCGACACCAAGATTGCTTGTGAATGA 1161 47.63 MSLKTIFQDMRSRSRCVVQDASAPPPTDALDQSCWANMPQELLREVLMRIEASETSWPFRKSVVACAGVCRSWRAITKEIVKTPELSGRLTFPISIKQPGSRDPLLQCFIKRNRSNQTYYLFLSLTSALTDDGKFLLAARKCKRPTYTDYIISLHAEDLSKGSSTYVGKLRSNFLGTKFTIFDGQPPHSGAKIMKSRSTRLVNLKQVSPKVPAGNYPVAHISYELNVLGSRGPRRMQCIMDAIPASAVELGGVAPTLTELSLSNVELFPSFPFLRSKSNADSLLSEPLGSQKDGMLVLRNKTPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENDPPTAENEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE* 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21443334 21445753 + Chy11G200490.1 Chy11g01469 237230

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01469 386 SUPERFAMILY F-box domain 27 78 IPR036047 GO:0005515
Chy11g01469 386 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 1 386 - -
Chy11g01469 386 ProSitePatterns Tub family signature 2. 371 386 IPR018066 -
Chy11g01469 386 Pfam Tub family 97 381 IPR000007 -
Chy11g01469 386 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Chy11g01469 386 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Chy11g01469 386 PRINTS Tubby superfamily signature 316 332 IPR000007 -
Chy11g01469 386 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Chy11g01469 386 PRINTS Tubby superfamily signature 298 315 IPR000007 -
Chy11g01469 386 PRINTS Tubby superfamily signature 343 362 IPR000007 -
Chy11g01469 386 PRINTS Tubby superfamily signature 364 386 IPR000007 -
Chy11g01469 386 Pfam F-box domain 35 82 IPR001810 GO:0005515
Chy11g01469 386 PANTHER TUBBY-RELATED 1 386 - -
Chy11g01469 386 ProSitePatterns Tub family signature 1. 316 329 IPR018066 -
Chy11g01469 386 SUPERFAMILY Tubby C-terminal domain-like 84 386 IPR025659 -
Chy11g01469 386 Gene3D Tubby Protein; Chain A 93 386 IPR025659 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01469 K19600 TUB, TULP; tubby and related proteins - csv:101203437 773.467
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy06g00654 Chy11g01469 CCT
Chy06g00654 Chy11g01469 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00642 Chy-Chr2:3917442 Chy11g01469 Chy-Chr11:21443334 3.18E-149 dispersed
Chy04g00489 Chy-Chr4:4705059 Chy11g01469 Chy-Chr11:21443334 6.34E-152 dispersed
Chy06g01095 Chy-Chr6:9150966 Chy11g01469 Chy-Chr11:21443334 1.67E-150 dispersed
Chy07g01239 Chy-Chr7:17147729 Chy11g01469 Chy-Chr11:21443334 1.15E-147 dispersed
Chy03g00407 Chy-Chr3:6030423 Chy11g01469 Chy-Chr11:21443334 7.51E-58 transposed
Chy07g00990 Chy-Chr7:14575065 Chy11g01469 Chy-Chr11:21443334 4.42E-127 transposed
Chy11g01469 Chy-Chr11:21443334 Chy06g00654 Chy-Chr6:4489235 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g364 . . . Bda08g00279 . . . . Cmo08g01177 Cmo17g00296 Cma06g01463 Cma14g01645 Car06g01262 Car14g01476 Sed02g1224 . Cpe03g01389 Bhi01g00948 Tan10g0947 Cmetu07g1074 Lac12g2379 Hepe05g1485 . Lcy11g1455 Cla06g00505 Cam06g0544 Cec06g0545 Cco06g0552 Clacu06g0531 Cmu06g0529 Cre06g1299 Cone14ag0786 . Cone7ag0180 Cone4ag0175 Lsi05g01499 . Chy11g01469 Cme06g00687 . . . . . . . . . . Cmo14g01689 Cma08g01203 Cma17g00306 Car08g01080 . Cpe12g00258 Cpe17g00002 Bhi12g01742 . . . . . . Cla05g00612 Cam05g0673 Cec05g0683 Cco05g0677 Clacu05g0667 Cmu05g0635 Cre05g0707 Lsi09g01396 Csa03g01411 Chy06g00654 Cme11g01977
Vvi12g44 . . . . . Bpe15g00138 Bma03g01343 . Cmo11g02044 . . Cma20g00259 . Car20g00226 Sed05g1863 Cpe15g00881 . Bhi05g02037 Tan02g0079 Cmetu01g1470 Lac12g0876 Hepe02g0037 . . Cla02g01802 Cam02g1905 Cec02g1926 Cco02g1967 Clacu02g1886 Cmu02g1831 Cre02g2148 Cone3ag1488 Cone10ag1424 . . . . Chy11g01469 . Blo04g01257 Blo13g00315 . Bda15g00853 . . . . Sed01g0735 . Cmo20g00284 . Cma19g01082 . Car19g00856 Cpe16g00728 . Bhi10g00984 Tan05g0625 Cmetu11g0610 . Hepe08g0620 . . . . . . . . . . Csa06g01184 . Cme11g01573
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy06g01095 . 1 429 TUB Transcription Factor Family AT1G76900 69.9 1.9e-169 592.4
Chy03g00507 . 1 433 TUB Transcription Factor Family AT1G76900 69.4 4.2e-169 591.3
Chy11g01469 CCT,ECH 13 387 TUB Transcription Factor Family AT1G76900 50.9 7.8e-115 411.0
Chy06g00654 CCT,ECH 13 388 TUB Transcription Factor Family AT1G76900 51.3 1.6e-112 403.3
Chy02g00642 CCT,ECH 38 403 TUB Transcription Factor Family AT1G76900 51.9 1.3e-106 383.6
Chy03g00407 . 1 190 TUB Transcription Factor Family AT1G76900 77.3 5.6e-81 298.5
Chy06g01095 . 174 429 TUB Transcription Factor Family AT1G25280 74.3 5.8e-102 367.5
Chy03g00507 . 175 433 TUB Transcription Factor Family AT1G25280 70.4 2.2e-93 339.0
Chy07g01239 CCT,ECH 244 482 TUB Transcription Factor Family AT1G25280 56.8 4.1e-71 265.0
Chy06g00654 CCT,ECH 154 388 TUB Transcription Factor Family AT1G25280 53.7 9.1e-71 263.8
Chy04g00489 . 180 412 TUB Transcription Factor Family AT1G25280 54.7 2.5e-68 255.8
Chy11g01469 CCT,ECH 154 387 TUB Transcription Factor Family AT1G25280 53.0 7.9e-67 250.8
Chy02g00642 CCT,ECH 164 403 TUB Transcription Factor Family AT1G25280 51.7 8.8e-66 247.3
Chy11g01469 CCT,ECH 98 387 TUB Transcription Factor Family AT5G18680 62.9 1.9e-98 355.9
Chy06g00654 CCT,ECH 98 388 TUB Transcription Factor Family AT5G18680 64.0 4.3e-98 354.8
Chy03g00507 . 112 433 TUB Transcription Factor Family AT5G18680 52.9 1.8e-83 306.2
Chy06g01095 . 113 429 TUB Transcription Factor Family AT5G18680 53.0 8.8e-83 303.9
Chy07g01239 CCT,ECH 185 482 TUB Transcription Factor Family AT5G18680 53.8 3.5e-79 292.0
Chy07g01239 CCT,ECH 39 481 TUB Transcription Factor Family AT2G18280 58.1 1.0e-139 493.4
Chy02g00642 CCT,ECH 7 402 TUB Transcription Factor Family AT2G18280 61.7 1.7e-134 476.1
Chy04g00489 . 1 411 TUB Transcription Factor Family AT2G18280 60.0 1.5e-125 446.4
Chy06g01095 . 1 428 TUB Transcription Factor Family AT2G18280 53.1 2.7e-119 425.6
Chy06g00654 CCT,ECH 1 387 TUB Transcription Factor Family AT2G18280 54.1 1.0e-115 413.7
Chy03g00507 . 1 432 TUB Transcription Factor Family AT2G18280 51.1 1.1e-112 403.7
Chy11g01469 CCT,ECH 1 386 TUB Transcription Factor Family AT2G18280 53.2 2.4e-112 402.5
Chy07g00990 . 50 381 TUB Transcription Factor Family AT2G18280 50.4 1.5e-93 340.1
Chy03g00407 . 1 190 TUB Transcription Factor Family AT2G18280 53.1 6.4e-49 191.8
Chy06g00654 CCT,ECH 1 388 TUB Transcription Factor Family AT2G47900 68.3 7.1e-160 560.5
Chy11g01469 CCT,ECH 1 387 TUB Transcription Factor Family AT2G47900 68.3 1.3e-158 556.2
Chy06g01095 . 1 429 TUB Transcription Factor Family AT2G47900 56.7 6.9e-131 464.2
Chy03g00507 . 1 433 TUB Transcription Factor Family AT2G47900 56.5 9.1e-131 463.8
Chy07g01239 CCT,ECH 39 482 TUB Transcription Factor Family AT2G47900 52.3 2.3e-118 422.5
Chy04g00489 . 10 412 TUB Transcription Factor Family AT2G47900 55.5 1.5e-117 419.9
Chy02g00642 CCT,ECH 10 403 TUB Transcription Factor Family AT2G47900 52.5 1.4e-110 396.7
Chy07g00990 . 51 381 TUB Transcription Factor Family AT2G47900 51.5 1.6e-98 356.7
Chy03g00407 . 1 190 TUB Transcription Factor Family AT2G47900 56.0 2.1e-58 223.4
Chy01g01931 . 84 299 TUB Transcription Factor Family AT1G16070 62.7 1.5e-74 276.6
Chy06g01095 . 66 429 TUB Transcription Factor Family AT1G43640 68.1 4.7e-147 517.7
Chy03g00507 . 65 433 TUB Transcription Factor Family AT1G43640 65.9 1.0e-141 500.0
Chy11g01469 CCT,ECH 47 387 TUB Transcription Factor Family AT1G43640 52.1 6.9e-106 380.9
Chy06g00654 CCT,ECH 49 388 TUB Transcription Factor Family AT1G43640 53.6 1.2e-105 380.2
Chy04g00489 . 69 412 TUB Transcription Factor Family AT1G43640 50.7 1.6e-99 359.8
Chy02g00642 CCT,ECH 55 403 TUB Transcription Factor Family AT1G43640 50.4 1.2e-94 343.6
Chy03g00407 . 67 190 TUB Transcription Factor Family AT1G43640 79.8 5.5e-55 211.8
Chy04g00489 . 34 412 TUB Transcription Factor Family AT1G47270 64.6 2.2e-134 475.7
Chy02g00642 CCT,ECH 21 403 TUB Transcription Factor Family AT1G47270 57.0 1.1e-120 430.3
Chy07g01239 CCT,ECH 72 482 TUB Transcription Factor Family AT1G47270 54.4 1.3e-118 423.3
Chy06g01095 . 1 429 TUB Transcription Factor Family AT1G47270 52.2 1.1e-114 410.2
Chy03g00507 . 48 433 TUB Transcription Factor Family AT1G47270 53.5 6.9e-112 401.0
Chy11g01469 CCT,ECH 1 387 TUB Transcription Factor Family AT1G47270 50.9 1.0e-107 387.1
Chy06g00654 CCT,ECH 1 388 TUB Transcription Factor Family AT1G47270 50.4 4.0e-104 375.2
Chy03g00407 . 30 190 TUB Transcription Factor Family AT1G47270 54.2 1.7e-46 183.7
Chy07g00990 . 1 381 TUB Transcription Factor Family AT1G53320 71.4 3.2e-154 541.6
Chy11g01469 CCT,ECH 22 387 TUB Transcription Factor Family AT1G53320 50.8 2.0e-103 372.9
Chy06g00654 CCT,ECH 22 388 TUB Transcription Factor Family AT1G53320 50.3 1.9e-98 356.3
Chy06g00654 CCT,ECH 98 388 TUB Transcription Factor Family AT3G06380 64.4 1.8e-96 349.4
Chy11g01469 CCT,ECH 98 387 TUB Transcription Factor Family AT3G06380 62.6 3.3e-95 345.1
Chy06g01095 . 117 429 TUB Transcription Factor Family AT3G06380 54.0 4.2e-82 301.6
Chy03g00507 . 116 433 TUB Transcription Factor Family AT3G06380 52.8 1.8e-80 296.2
Chy07g01239 CCT,ECH 185 482 TUB Transcription Factor Family AT3G06380 53.4 8.8e-80 293.9
Chy04g00489 . 120 412 TUB Transcription Factor Family AT3G06380 53.2 1.7e-78 289.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002294 1 2 1 1 2 2 3 2 2 2 2 2 4 1 2 4 2 3 3 2 2 2 2 2 2 2 2 3 2 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18765 PF01167 Tub 2.30E-109 CL0395 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01469 Chy_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0