Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01469 ATGTCTCTCAAGACCATCTTCCAAGATATGAGGTCCCGCTCCCGCTGCGTCGTCCAGGACGCCTCCGCTCCGCCCCCCACCGATGCCCTCGACCAGAGCTGTTGGGCCAATATGCCTCAGGAGCTTCTTAGGGAGGTTTTGATGAGAATCGAGGCCTCCGAGACCTCTTGGCCCTTCAGGAAGAGTGTCGTCGCTTGCGCCGGAGTGTGTCGGAGCTGGCGAGCCATTACTAAGGAGATCGTTAAAACGCCGGAACTTTCTGGTAGGTTGACGTTCCCGATCTCTATTAAGCAGCCTGGTTCAAGGGATCCTCTTCTACAGTGTTTCATAAAGCGAAACAGATCAAATCAAACTTATTATCTCTTCCTCAGTTTGACAAGTGCACTAACTGATGATGGTAAATTTCTACTTGCTGCACGCAAATGCAAGCGCCCGACCTACACAGATTACATTATCTCTTTACATGCTGAGGATTTGTCAAAGGGGAGCAGCACCTATGTTGGGAAATTGAGATCTAACTTTCTAGGAACCAAGTTCACAATCTTCGATGGGCAACCACCACATTCTGGAGCCAAGATCATGAAAAGTCGCTCCACAAGGCTAGTGAATCTGAAACAAGTTTCGCCCAAGGTCCCTGCAGGAAACTATCCAGTTGCACACATTTCATATGAACTAAATGTGTTGGGATCAAGGGGTCCGAGGAGAATGCAGTGTATCATGGACGCTATTCCCGCTTCAGCAGTTGAACTTGGAGGAGTGGCTCCCACGCTAACTGAGCTTTCTTTGAGCAACGTGGAATTGTTCCCGTCCTTCCCCTTTCTGAGGTCAAAATCAAATGCTGATAGCTTACTTTCTGAACCTTTGGGGAGTCAGAAAGATGGAATGTTGGTGCTGAGAAACAAAACACCCAGATGGCACGAGCAGCTTCAGTGCTGGTGTCTGAACTTTCATGGAAGAGTGACAATTGCTTCTGTAAAAAACTTTCAACTAGTTGCTTCTCCCGAAAATGATCCTCCTACAGCAGAAAACGAGAAGATCATCCTTCAGTTTGGAAAAGTGGGGAAGGATTTATTCACAATGGATTATCGTTACCCAATCTCCGCTTTCCAGGCTTTCGCAATCTGCCTCAGCAGTTTCGACACCAAGATTGCTTGTGAATGA 1161 47.63 MSLKTIFQDMRSRSRCVVQDASAPPPTDALDQSCWANMPQELLREVLMRIEASETSWPFRKSVVACAGVCRSWRAITKEIVKTPELSGRLTFPISIKQPGSRDPLLQCFIKRNRSNQTYYLFLSLTSALTDDGKFLLAARKCKRPTYTDYIISLHAEDLSKGSSTYVGKLRSNFLGTKFTIFDGQPPHSGAKIMKSRSTRLVNLKQVSPKVPAGNYPVAHISYELNVLGSRGPRRMQCIMDAIPASAVELGGVAPTLTELSLSNVELFPSFPFLRSKSNADSLLSEPLGSQKDGMLVLRNKTPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENDPPTAENEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE* 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21443334 21445753 + Chy11G200490.1 Chy11g01469 237230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01469 386 SUPERFAMILY F-box domain 27 78 IPR036047 GO:0005515
Chy11g01469 386 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 1 386 - -
Chy11g01469 386 ProSitePatterns Tub family signature 2. 371 386 IPR018066 -
Chy11g01469 386 Pfam Tub family 97 381 IPR000007 -
Chy11g01469 386 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Chy11g01469 386 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Chy11g01469 386 PRINTS Tubby superfamily signature 316 332 IPR000007 -
Chy11g01469 386 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Chy11g01469 386 PRINTS Tubby superfamily signature 298 315 IPR000007 -
Chy11g01469 386 PRINTS Tubby superfamily signature 343 362 IPR000007 -
Chy11g01469 386 PRINTS Tubby superfamily signature 364 386 IPR000007 -
Chy11g01469 386 Pfam F-box domain 35 82 IPR001810 GO:0005515
Chy11g01469 386 PANTHER TUBBY-RELATED 1 386 - -
Chy11g01469 386 ProSitePatterns Tub family signature 1. 316 329 IPR018066 -
Chy11g01469 386 SUPERFAMILY Tubby C-terminal domain-like 84 386 IPR025659 -
Chy11g01469 386 Gene3D Tubby Protein; Chain A 93 386 IPR025659 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy06g00654 Chy11g01469 CCT
Chy06g00654 Chy11g01469 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00642 Chy-Chr2:3917442 Chy11g01469 Chy-Chr11:21443334 3.18E-149 dispersed
Chy04g00489 Chy-Chr4:4705059 Chy11g01469 Chy-Chr11:21443334 6.34E-152 dispersed
Chy06g01095 Chy-Chr6:9150966 Chy11g01469 Chy-Chr11:21443334 1.67E-150 dispersed
Chy07g01239 Chy-Chr7:17147729 Chy11g01469 Chy-Chr11:21443334 1.15E-147 dispersed
Chy03g00407 Chy-Chr3:6030423 Chy11g01469 Chy-Chr11:21443334 7.51E-58 transposed
Chy07g00990 Chy-Chr7:14575065 Chy11g01469 Chy-Chr11:21443334 4.42E-127 transposed
Chy11g01469 Chy-Chr11:21443334 Chy06g00654 Chy-Chr6:4489235 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18765 PF01167 Tub 2.30E-109 CL0395 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01469 K19600 - csv:101203437 773.467