Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01479 ATGGCGAAACCCTCGAAGCGACAGGCCTCTTCCGATGAAGCCATGTCCAATGGCACTAGCTCGTCGGAGGAAGAGGAGCAAACTAACGACCAGATCAATGAGGAGGAAGACGAGGAGGAGCTCGAAGCGGTCGCTCGCTCGGCAGGCTCCGACGAAGATGAAGCTGCCGACGATTCTGATAACGATGGATCACCTGTCGAAAATGGCGAGGAAGAGGATGGAAGTAACGACGGCCAAGATGATAAAACTGATATTGGGCGGCGTGAAAAGGCCAGACTAAGAGAAATGCAACAAATGAAGAAGCAGAAGATTCAGGATATGTTAGATGCACAAAATGCTGCTATTGATGCTGATATGAATAACAAGGGGAAGGGACGCTTGAAGTATCTTCTGCAACAAACTGAGATATTTGCTCATTTTGCTAAAGGCGAGCATTCTTCTTCCCAGAAGAAAACGAAGGGAAGGGGTCGCCATGCATCGAAACTAACTGAAGAAGAAGAAGATGAAGAATATCTTAAAGAGGAAGAAGACGGTCTATCTGGGACTGGGAACACTCGTTTACTTTCACAACCATCTTGTATCCAAGGGAAAATGAGAGATTATCAACTAGCTGGATTAAACTGGCTCATTCGGCTATATGAGAATGGCATAAATGGAATCCTTGCTGATGAGATGGGGCTGGGCAAGACATTACAAACCATCTCCTTGTTGGGCTATCTACATGAGTACCGAGGTATAACAGGTCCCCATATGGTAGTTGCTCCAAAATCTACTCTGGGAAATTGGATGAATGAAATTCGTCGATTTTGCCCTGTCTTGCGTGCTGTAAAGTTTCTTGGAAATCCTGATGAAAGGAGGGATATACGGGAAAATTTACTTGTTGCTGGGAAATTTGATGTATGTGTTACCAGTTTTGAAATGGCCATTAAGGAGAAGTCTTGCTTGCGCCGGTTTAGTTGGCGTTACATTATTATTGATGAAGCCCATCGAATTAAGAATGAGAATTCCCTCCTTTCAAAGACAATGAGGCTTTATAACACCAACTACCGTCTTCTAATCACTGGCACACCTCTTCAGAACAATCTTCATGAACTGTGGTCTCTCCTCAATTTCCTTTTGCCTGAAATATTTAGTTCAGCTGAGACTTTTGATGAATGGTTTCAAATTTCTGGGGAAAATGATCAGCAGGAGGTGGTTCAACAACTTCACAAGGTCCTTCGGCCATTTCTTCTTCGGAGGTTGAAATCAGATGTAGAGAAAGGTTTACCTCCAAAAAAGGAAACGATACTCAAAGTAGGCATGTCGCAAATGCAAAAACAGTACTATCGTGCTTTGCTGCAGAAGGATCTTGAAGTTGTTAATGCCGGTGGTGAGCGTAAACGGCTACTTAATATAGCAATGCAGCTCCGGAAATGCTGTAATCACCCATATTTGTTTCAAGGTGCTGAACCTGGGCCTCCTTACACCACAGGGGACCATCTTATTACTAGTGCTGGTAAAATGGTTCTTTTGGACAAGTTGCTTCCTAAACTGAAAGAGCGTGATTCTAGAGTCCTAATATTTTCGCAGATGACAAGGCTGTTAGATATTCTTGAAGATTATTTAATGTTTCGTGGATACTATTATTGTCGAATTGATGGTAACACTGGTGGTGAAGATCGTGATGCATCCATTGATGCCTTCAACAAGCCTGGAAGTGAAAAATTTGTTTTCTTATTATCAACCAGAGCTGGAGGTCTCGGTATTAATCTTGCTACTGCAGATGTAGTTATTCTTTATGACAGTGACTGGAATCCTCAAGTTGATCTGCAAGCACAAGATCGTGCTCACAGGATTGGTCAGAAGAAGGAAGTTCAAGTGTTCCGGTTTTGCACTGAGTATACCATCGAGGAAAAAGTGATAGAAAGGGCTTACAAGAAACTTGCCCTTGATGCTTTGGTGATTCAACAAGGACGTTTAGCAGAGCAGAAAACTGTCAACAAGGATGAGCTACTTCAAATGGTGAGGTTTGGTGCTGAGATGGTTTTCAGTTCCAAAGATAGCACCATCACAGAAGAGGACATTGACAGAATCATTGCAAAGGGAGAAGCAGCAACAGCAGAGCTTGATGCAAAGATGAAGAAATTTACTGAAGATGCCATTAAATTTAAAATGGATGAAACTGCTGAATTGTACGATTTTGATGATGAAAAGGACGAGAATAAATTTGACTTCAAGAAAATTGTCAGTGAAAATTGGATTGAACCACCTAAAAGAGAACGGAAGCGGAATTACTCAGAATCAGAATACTTTAAGCAAACGATGCGGCAGGGTGGTCCAACAAAACCAAAAGAGCCAAGGATACCTCGCATGCCTCAGTTGCACGATTTCCAGTTTTTCAACACACAAAGGTTGAGTGAACTCTATGAAAAAGAAGTGCGGTATCTCATGCAAACACATCAAAAGAACCAGTTGAAAGACACAATAGATGTCGAAGAGCCTGAAGAGGTGGGCGATCCCTTGACTGCCGAAGAGCTAGAGGAGAAGGAGCGACTCTTAGAGGAAGGATTTTCTTCATGGAGTCGCAGAGATTTCAATACATTTATTAGGGCTTGTGAGAAATATGGGCGAAATGATATTAAAAGTATTGCTTCTGAGATGGAAGGAAAAACGGAAGAAGAAGTTGAGAGATATGCAAAGGTCTTTAAGGAGAGATACAAAGAGTTAAATGATTATGATAGAATCATCAAAAACATAGAAAGAGGGGAAGCAAGGATTTCTCGTAAAGACGAAATAATGAAAGCCATTGGGAAGAAACTGGATCGCTACAAAAATCCATGGCTGGAGCTCAAGATCCAGTATGGCCAGAATAAAGGGAAGTTATATAACGAAGAATGTGATCGTTTCATGATATGCATGGTTCACAAGCTTGGTTACGGAAACTGGGACGAACTGAAGGCAGCATTTCGAACATCACCCTTGTTTCGATTTGATTGGTTTATCAAGTCACGAACGACACAAGAACTTGCAAGGAGGTGTGATACCCTAATCCGATTAGTGGAGAAAGAAAACCAGGAGCACGACGAAAGGGAGAGACAGGCCCGTAAAGAAAAGAAGCTCGCGAAGAGTATGACACCATCAAAACGTTCCTTAGCAAGGCAGACCGAGAGCCCAACTAATATAAAGAAGCGGAAGCAATTATCAATGGATGATTATGTAAACTCCATGGTGTTAGTGCATCAAGGAAAAGGTTGCATCATCGGCCGTCTGAAGAACAAAGGCGTTGACAAACTGATGACCATGTAA 3285 42.25 MAKPSKRQASSDEAMSNGTSSSEEEEQTNDQINEEEDEEELEAVARSAGSDEDEAADDSDNDGSPVENGEEEDGSNDGQDDKTDIGRREKARLREMQQMKKQKIQDMLDAQNAAIDADMNNKGKGRLKYLLQQTEIFAHFAKGEHSSSQKKTKGRGRHASKLTEEEEDEEYLKEEEDGLSGTGNTRLLSQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPDERRDIRENLLVAGKFDVCVTSFEMAIKEKSCLRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITSAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYYYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITEEDIDRIIAKGEAATAELDAKMKKFTEDAIKFKMDETAELYDFDDEKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDTIDVEEPEEVGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFIKSRTTQELARRCDTLIRLVEKENQEHDERERQARKEKKLAKSMTPSKRSLARQTESPTNIKKRKQLSMDDYVNSMVLVHQGKGCIIGRLKNKGVDKLMTM* 1095
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21521704 21529224 + Chy11G200590.1 Chy11g01479 237240

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01479 1094 Coils Coil 93 113 - -
Chy11g01479 1094 Pfam SNF2-related domain 211 478 IPR000330 GO:0005524|GO:0140658
Chy11g01479 1094 Gene3D iswi atpase 904 936 - -
Chy11g01479 1094 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 9 1067 - -
Chy11g01479 1094 Gene3D - 849 903 - -
Chy11g01479 1094 SMART ultradead3 194 386 IPR014001 -
Chy11g01479 1094 MobiDBLite consensus disorder prediction 9 26 - -
Chy11g01479 1094 Pfam HAND 762 844 IPR015194 GO:0003677|GO:0006338|GO:0031491
Chy11g01479 1094 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 210 375 IPR014001 -
Chy11g01479 1094 Gene3D - 419 711 IPR027417 -
Chy11g01479 1094 SUPERFAMILY Homeodomain-like 904 1026 IPR009057 -
Chy11g01479 1094 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 503 654 IPR001650 -
Chy11g01479 1094 SMART sant 849 898 IPR001005 -
Chy11g01479 1094 SMART sant 951 1012 IPR001005 -
Chy11g01479 1094 ProSiteProfiles SANT domain profile. 848 900 IPR017884 -
Chy11g01479 1094 PANTHER SNF2/RAD54 HELICASE FAMILY 9 1067 - -
Chy11g01479 1094 MobiDBLite consensus disorder prediction 1 91 - -
Chy11g01479 1094 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 415 694 IPR027417 -
Chy11g01479 1094 Coils Coil 22 42 - -
Chy11g01479 1094 MobiDBLite consensus disorder prediction 1018 1037 - -
Chy11g01479 1094 Gene3D - 199 414 IPR038718 -
Chy11g01479 1094 CDD DEXHc_SMARCA1_SMARCA5 195 415 IPR044754 GO:0005524
Chy11g01479 1094 SUPERFAMILY Homeodomain-like 852 902 IPR009057 -
Chy11g01479 1094 Pfam SLIDE 906 1016 IPR015195 GO:0003677|GO:0005634|GO:0006338
Chy11g01479 1094 Pfam Helicase conserved C-terminal domain 501 613 IPR001650 -
Chy11g01479 1094 SMART helicmild6 529 613 IPR001650 -
Chy11g01479 1094 MobiDBLite consensus disorder prediction 1018 1053 - -
Chy11g01479 1094 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 761 851 IPR036306 GO:0003677|GO:0006338|GO:0031491
Chy11g01479 1094 MobiDBLite consensus disorder prediction 53 78 - -
Chy11g01479 1094 MobiDBLite consensus disorder prediction 141 186 - -
Chy11g01479 1094 Gene3D ISWI, HAND domain 750 848 IPR036306 GO:0003677|GO:0006338|GO:0031491
Chy11g01479 1094 CDD SANT 852 896 IPR001005 -
Chy11g01479 1094 Coils Coil 1010 1033 - -
Chy11g01479 1094 CDD SF2_C_SNF 499 624 - -
Chy11g01479 1094 MobiDBLite consensus disorder prediction 27 42 - -
Chy11g01479 1094 Gene3D - 937 1040 - -
Chy11g01479 1094 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 413 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01479 K11654 SMARCA5, SNF2H, ISWI; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] - csv:101221495 2038.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01770 Chy-Chr4:24044194 Chy11g01479 Chy-Chr11:21521704 9.17E-40 dispersed
Chy06g00650 Chy-Chr6:4418828 Chy11g01479 Chy-Chr11:21521704 3.53E-126 dispersed
Chy07g00341 Chy-Chr7:2778990 Chy11g01479 Chy-Chr11:21521704 1.41E-120 dispersed
Chy07g01291 Chy-Chr7:17567849 Chy11g01479 Chy-Chr11:21521704 1.69E-146 dispersed
Chy10g00015 Chy-Chr10:412622 Chy11g01479 Chy-Chr11:21521704 1.49E-48 dispersed
Chy11g01479 Chy-Chr11:21521704 Chy11g01756 Chy-Chr11:23943129 7.63E-121 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g350 . . . Bda08g00281 . . . Bma05g01060 Cmo08g01181 . . . . . . . . . . . . . . . Cla06g00499 Cam06g0536 Cec06g0536 Cco06g0540 Clacu06g0521 Cmu06g0523 Cre06g1293 . . . . . . Chy11g01479 . . . . . Bpe05g00850 . . . Sed09g0640 . . Cma08g01207 . Car08g01083 . . Cpe17g00005 Bhi12g02092 Tan06g2636 Cmetu11g0294 Lac12g2383 . . . . . . . . . . Lsi09g01406 . . Cme11g01986
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009268 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18766 PF00176 SNF2_N 1.50E-71 CL0023 Chy TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01479 Chy_Chr11 FPKM 4.109271 5.449771 9.331029 9.10055 6.617651 6.801504 6.563168 14.552519 14.237398 14.629617