Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01508 ATGGCGGGTATGTACGGCTGCACCATCTCTTTCTCCCTTCCTTCCAACAAATTCACCATTTGCACAGCCAAGCCACTGCTTTCAGTTTCATCCTCCATTTCCATTTCATCTCGTTCCAAGCTCCGAACAAGAAAAAATCATTTGCGAATCAAAATTCTCAAAACCCTAACCAGAACTCCTCCTTTCTCTCTCTCTCCTATTCCTCCTGAAACCCAATCTCCAACTCCGATCGTCTCGCCGGGAACTTCAGGTCCTGTCGATGTCGAGACCGAGGTTTTGTCTCCGGCCGAATCCTGCCCTTCCTCCACGGACGGCGAATCTCGCCTCTCCGAGAGCTCGAACATTGCTTCGTTGTTTAATTTTGACGTTGCCAAATTTTCTTGGGGAAGTTTTGTCAAGCATGGCGTTTATTTGCTTGCTCTTTTTGCGTTTCAGACAATTTGTACTGTGTGGGTCTTAGAATATGGTAGTTCGATTGAGGAAGATAAGAGTTCAAATGAAGATTTGAGTGTTAGGAGAAAAGGCGGAAGGGAAGTGTTGTTGAATGGAAATGAGGGAAATGTCCTTGGAAATTTTGGGTCGGAAAGAAGCAAGTCGGTTTATTTGGAGGAAACGAAAATGAGAGAAAAGATTGAAGAGATAAGATTGATGGCTAGGGCAGCAAGGATAGAGGAGAAAAATAAAATGTCTGATGATTTTGAGGAAGACGATATGGAGGGCGGAAATGCAATTTCCAGAGCTAGGATTGGTATCGAGAAAGAGGTAGATGCTCGACTTGTTAAGTTAGAGAAGAGGCTAAATTCTGCCAAAGAAAAGATGTCGGGTTCGTCGATGAATTATTTGCTTAAGTCTGAAAATGTTGAGGATGCAGTTGAAAGGAACAGCTTCAATGGTGAAGAGAGGAACAAGAGTCTAATGTATAAGAAAAAAATGAAATACAGAAACTCTTCTAGTCATAGAATCAAGAAGCCTGGTTTTGTATCTAATGGGAAAAAGAGTGGCTCAAATGGCAAGGGTGCTGCAAATTTTGTTGATAAAATGGGAATGAAGGATACTGAAAAACGGCTAGGTAACAAAATCATGGATAGTGTTTCAGAGATGTTCGAAGATGATGGCACAAATTCTGCAAGAAATGAATTAGTATTACCACAGGAAAATGATAGAACGAATTTGGATATTGGAATGAAGGCTTCGAGTTCAAAGAATAAGCCAAGTAATGGCGTTGTTCAGGAGTCTTCATTTGTGATATCGAAGTCGCAAAATTTAAAAAATGCAATGGAGAATAGATCTTCGGCGAGTTCAGTTGACAGTGTTGAAAAGAAATCTAAGGCTGGGGAAGATAGAAGAAAACAATCAAACAAGAAAGCCGATTTATGGTGGTTGAATCTTCCTTATGTTCTAATAATTGTTATGCGTCAAGGTTCCGATGGTGAAGAACTAGATGGACTTTTCACCTTAAAGGTTCCTTCCGCGACACAAGATATTGAGGAATCTACATATATGGTTGCTTTTGAAAACCATGTCGATGCAAGTAACTTCTGTTATCTTCTGGAATCTTTTTTTGAAGAGCTCGACAATTTCACAACAGATGTCGTTCCTCTGCCAACAAAAGAACTTGAGAAGTTCATAAAATCAAATACAAGCAAAATGATTGTTGTGAAGAAGGGGCAACTCCAGCTCTATGCTGGCCAACCGTTTGCCGATGTCGAGATGGCTTTGTATTCTTTGATTGAACAAAATGAGAATGTTATTTCTTTACATTCTTAG 1767 40.29 MAGMYGCTISFSLPSNKFTICTAKPLLSVSSSISISSRSKLRTRKNHLRIKILKTLTRTPPFSLSPIPPETQSPTPIVSPGTSGPVDVETEVLSPAESCPSSTDGESRLSESSNIASLFNFDVAKFSWGSFVKHGVYLLALFAFQTICTVWVLEYGSSIEEDKSSNEDLSVRRKGGREVLLNGNEGNVLGNFGSERSKSVYLEETKMREKIEEIRLMARAARIEEKNKMSDDFEEDDMEGGNAISRARIGIEKEVDARLVKLEKRLNSAKEKMSGSSMNYLLKSENVEDAVERNSFNGEERNKSLMYKKKMKYRNSSSHRIKKPGFVSNGKKSGSNGKGAANFVDKMGMKDTEKRLGNKIMDSVSEMFEDDGTNSARNELVLPQENDRTNLDIGMKASSSKNKPSNGVVQESSFVISKSQNLKNAMENRSSASSVDSVEKKSKAGEDRRKQSNKKADLWWLNLPYVLIIVMRQGSDGEELDGLFTLKVPSATQDIEESTYMVAFENHVDASNFCYLLESFFEELDNFTTDVVPLPTKELEKFIKSNTSKMIVVKKGQLQLYAGQPFADVEMALYSLIEQNENVISLHS* 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21734139 21738262 + Chy11G200880.1 Chy11g01508 237269

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01508 588 MobiDBLite consensus disorder prediction 434 450 - -
Chy11g01508 588 MobiDBLite consensus disorder prediction 368 410 - -
Chy11g01508 588 MobiDBLite consensus disorder prediction 61 86 - -
Chy11g01508 588 MobiDBLite consensus disorder prediction 425 450 - -
Chy11g01508 588 PANTHER ABC SUBFAMILY C PROTEIN 1 580 - -
Chy11g01508 588 Pfam Protein of unknown function (DUF3110) 477 558 IPR021503 -
Chy11g01508 588 PANTHER EMBRYO DEFECTIVE 1703-RELATED 1 580 - -
Chy11g01508 588 Coils Coil 252 279 - -
Chy11g01508 588 MobiDBLite consensus disorder prediction 312 343 - -
Chy11g01508 588 MobiDBLite consensus disorder prediction 377 410 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01508 - - - csv:105436003 1041.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00097 Chy-Chr6:653759 Chy11g01508 Chy-Chr11:21734139 1.77E-14 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g304 . Blo12g00018 . . Bpe04g01134 . . . . Cmo17g00313 . . . . . . . . . . . . . . Cla06g00479 Cam06g0514 Cec06g0515 Cco06g0518 Clacu06g0498 Cmu06g0500 Cre06g1271 . . . . . . Chy11g01508 . . . . . . . . . Sed04g1796 . . . . . Car17g00298 Cpe12g00276 . Bhi12g02060 Tan06g2675 Cmetu11g2440 Lac11g0838 Hepe03g0103 . Lcy12g0730 . . . . . . . Lsi09g01429 . . Cme11g02010
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010430 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 4 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01508 Chy_Chr11 FPKM 8.88488 8.243861 6.18185 10.188661 11.500127 7.528681 11.632457 7.640588 7.206069 7.969234