Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01540 ATGGCACCGAAGAGCCAACAGAACAGTAAACCCAAAAAGAGAAAGCAAATTTCGGGCAACAAGGGCTCCTCTCATGGCTCCATTTCGAAGAAACCGAAGTTTGTTGTCAATAAGTCTTTAAAATCCCCCAGCCGGGGGACTGTGGGTAAACCCTTCAAACCGTACAAACAGAAAGAAAATCAGCATTTCAAATCAAATGTTGAAAAAGTAGAAGCTCGAAAGGAGAATTCGGTGCCAGCCACAAATCGAGATCGTCGAGTCCAAGCTAAGGAACTTGCAGAGGCTAGGAAGAAGAAAAGGAAACGACATTATGATTTGGAACATGAGCTTGCGCATCTATGGGAGGAAATGAGGAAACGTGATATCACTAAAGAAGATAGATCCAAATTGATAAGTAAAGCATTAGATAACATGAAGGGAAAGATCCCTGAAATAGCAGGTTCCCACGTATCATCTCGTGTGCTTCAGACGTGTGTTAAACACTGCACAGATACTGAGAGAGATGCAGTGTTTGAGGAACTTAAGCCTCATTTTCTTACTCTTGCGTGCAACACTTATGCAGTTCATCTGGTGAAGAAAATGTTAGACAATGCCTCGAAAAAGCAGCTGGCAGTGTTTATCTCATCTTTACGTGGCCACGTAGCTTCTCTTCTTCGTCACATGGTTGGATCTTTAGTTGTTGAACATGCATACCATTTAGCAAATGCAGCGCAGAAGCAAACTCTTCTACAGGAACTTTATTCATTGGAACTTCAGTTATTTAAGGATCTGGTCTCAGTGAAAGAGAGCAGGTTAGTAGATATAATTTCAAAATTGGACATTCAGAAAGCTTCAGTCTCACGACACATGATATCGGTTATCCAACCAATTTTGGAAAAAGGGATAGTTGACCACTCTATCATACATAGGGTGCTGGTGGAATACTTTACCGTAGCTGATAAGACATCTGCCGCAGATGTAATCCAACAGTTGTCCAGTTCACTTCTCGTTAGAATGATTCACACTAAAGATGGATCGAGGATCGGTATACTTTGCATAAAACATGGCAGTGCAAAGGAAAGAAAGAAAAGCATCAAGGGAATGAAAGGCCATATGAAGAAGATAGCGCATGAGCAACATGCAAGTATGGTGCTTGTGTGCATCATCTCAGTTGTTGATGATACAAAGCTCATTAGGAAGATTATCATCAAGGAGCTCGAAAAAGATTTGAAGGAGCTCATTTTAGACAAGAATGGAAGGCGTGTATTACTGCAACTGTTGCATCCAAACTGTTCACGCTACTTCAGTCCTGACGATCTTGCTTCTTTAAATTCATCAATACCTTCTCTTTGCAACAAGGGTGAGTCGGGAGATGAAAAGGCTGAAGAGAAGGTGGAGAATGACACGGGTGAAAAAGAAAGTGAAGCTGATGGAAGCAAGGTTTCTGCTGAGGGCTCTGAAGTTGTGGAGGGTGGTAAAAAAGATCCACTTATCAGAAGGCATGAGTTGTTGGTGGATAGTGGGCTCGCTGAGAAGCTTGTAGACTTATGCATCAACGATGCTGGGGAAATATTAATGTCAAATTTTGGCCGTGAAGTACTGTACGAGGTTACAACTGGGGGTGCTGATGGCATTCTGCAATCAAAATTGGGTGAAAAGTTGAGTGCTTTGTATGAAGCTATTGCTTCACTTGCAGCTGAGCCTAAATCCGAAGACGCAGCCTCAGGAGATGAGCACGTCTTTGAAAATTTCCACTCTAGTAGGACAATAAGAAAGCTAATCTTGGACTGCCCTGCTTTTGCCCTCACTTTGTGGAACAAAGCACTTGAAGGCAAATCCAAAATGTGGGCCCAAGGCCACAGCTGTAAGGTAGTTCAAGCTTTCCTGGAATCCTCGAACTCTAGTGTTCGTGAGATTGCGAGAGTAGAATTGCAGTCCTTGATAGACGAAGGTGTACTCAAAATCCCAGACTCGAAGATGTCTGCCAACAAAAGCTAG 1977 42.69 MAPKSQQNSKPKKRKQISGNKGSSHGSISKKPKFVVNKSLKSPSRGTVGKPFKPYKQKENQHFKSNVEKVEARKENSVPATNRDRRVQAKELAEARKKKRKRHYDLEHELAHLWEEMRKRDITKEDRSKLISKALDNMKGKIPEIAGSHVSSRVLQTCVKHCTDTERDAVFEELKPHFLTLACNTYAVHLVKKMLDNASKKQLAVFISSLRGHVASLLRHMVGSLVVEHAYHLANAAQKQTLLQELYSLELQLFKDLVSVKESRLVDIISKLDIQKASVSRHMISVIQPILEKGIVDHSIIHRVLVEYFTVADKTSAADVIQQLSSSLLVRMIHTKDGSRIGILCIKHGSAKERKKSIKGMKGHMKKIAHEQHASMVLVCIISVVDDTKLIRKIIIKELEKDLKELILDKNGRRVLLQLLHPNCSRYFSPDDLASLNSSIPSLCNKGESGDEKAEEKVENDTGEKESEADGSKVSAEGSEVVEGGKKDPLIRRHELLVDSGLAEKLVDLCINDAGEILMSNFGREVLYEVTTGGADGILQSKLGEKLSALYEAIASLAAEPKSEDAASGDEHVFENFHSSRTIRKLILDCPAFALTLWNKALEGKSKMWAQGHSCKVVQAFLESSNSSVREIARVELQSLIDEGVLKIPDSKMSANKS* 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21967637 21972755 - Chy11G201200.1 Chy11g01540 237301

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01540 658 Pfam Pumilio-family RNA binding repeat 152 174 IPR001313 GO:0003723
Chy11g01540 658 Pfam Pumilio-family RNA binding repeat 177 205 IPR001313 GO:0003723
Chy11g01540 658 Pfam Pumilio-family RNA binding repeat 213 246 IPR001313 GO:0003723
Chy11g01540 658 SUPERFAMILY ARM repeat 118 430 IPR016024 -
Chy11g01540 658 Pfam CPL (NUC119) domain 484 587 IPR012959 GO:0003723
Chy11g01540 658 ProSiteProfiles Pumilio RNA-binding repeat profile. 173 208 IPR001313 GO:0003723
Chy11g01540 658 MobiDBLite consensus disorder prediction 446 484 - -
Chy11g01540 658 PANTHER UNCHARACTERIZED 1 653 IPR040059 GO:0003723
Chy11g01540 658 ProSiteProfiles Pumilio RNA-binding repeat profile. 209 244 IPR001313 GO:0003723
Chy11g01540 658 MobiDBLite consensus disorder prediction 1 65 - -
Chy11g01540 658 SMART pum_5 360 397 IPR001313 GO:0003723
Chy11g01540 658 SMART pum_5 173 208 IPR001313 GO:0003723
Chy11g01540 658 SMART pum_5 324 359 IPR001313 GO:0003723
Chy11g01540 658 SMART pum_5 209 244 IPR001313 GO:0003723
Chy11g01540 658 SMART pum_5 137 172 IPR001313 GO:0003723
Chy11g01540 658 SMART pum_5 398 438 IPR001313 GO:0003723
Chy11g01540 658 MobiDBLite consensus disorder prediction 448 473 - -
Chy11g01540 658 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 109 462 IPR033133 GO:0003723
Chy11g01540 658 Gene3D - 109 447 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01540 K14844 PUF6; pumilio homology domain family member 6 - csv:101210633 1195.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g01306 Chy-Chr10:17488104 Chy11g01540 Chy-Chr11:21967637 7.25E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g138 . . . . . . . . Cmo08g01220 . . . . . . . . . . . . . . . Cla06g00454 Cam06g0484 Cec06g0488 Cco06g0487 Clacu06g0471 Cmu06g0472 Cre06g1245 . . . . . Csa06g01771 Chy11g01540 . . Blo07g00164 . . . Bpe13g00677 . Bma06g01487 . . . Cma08g01249 . Car08g01122 . . Cpe17g00043 Bhi12g02022 Tan06g2715 . . Hepe03g0075 . . . . . . . . . Lsi09g01460 . . Cme11g02048
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010706 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01540 Chy_Chr11 FPKM 52.345108 58.216774 36.286758 38.29937 39.519382 36.451363 42.001186 52.593342 52.054344 55.302139