Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01541 ATGACGATAAAAGGGTTTAGCTTCTTCTTCTCCACGCCGGCGTCTCTATCCCTTTTAGCAGTTCAGCGTCGCCGTCGCCACTCCGCCGCTCGTGCTGCCACAGCATATCTCCTGGTGGGTTGCATTGAAATCATGGGGTTTTCAAATATCAGAGATCTATTGACATCTTTTAGTCCAGATTTGCACTTCTTTGCTATCAGCTCTGGAGATGGTCGGATTAAGATTTGGGACACGTTGAAGGGGCAGATACAGACTGAGTTTGCAGACTTCTTTACATCTGATTCAACAAGCATACTCACGAAACCAGAAAAAGGGCATCTATCAGTTGATTATAAATGCATGAAGTGGTTGTCATTGGAGAAAAAGAGAAAAAGAAAGCGCCAATGTTTGCTATTGTTGTTAGGAACTGGTAGTGGTGATGTTCTAGCCCTTGATGTAGCAGCTGGTGAATTGAAGTGGAAAATAAGTGATTGTCATCCTGGGGGTGTTGCATCAATTTCGTTTCCTACACATGGTTCATGCATTTATACTGCTGGTGCTGATGGAATGCTATGCGAAATCAATTCTTTGACGGGAAACCTGTTGAGGAAGTTCAAAGCTTCCACAAAGGCAATATCCTGTATTTCAGTTTCACCAGATGGGAAGATAATTGCAACTGCAGCTTCCCAAGTGAAGATCTTCAACTGCTCCAATCACAAAAAGATTCAGAAGTTTTCTGGGCATCCTGGAGCCGTTCGATGCATGGTTTTTACCGAAGATGGAAGGTACATCCTTTCATCTGCAGTTGGTGAAAGGTATATTGTTGTTTGGAGTGTAGATGGAGGGAAAGAACAATCAGCTAGTTGTGTTCTTGCAATAGAGCATCCTGCCATCTTTGTGGACAGCAGGTGTTCGAATGATGGAGGTGATGAAACTGCTCTGTACATTTTAGCCATATCAGAAATCGGTGTTTGTTATTTATGGTATGGACAGAATCTTGAGGAGTTACGAAGTGCCAAGCCTACTAAAGTATTGATGTCTGGTAATGATATTTTCTCAAAGAGTAAAAAACGGGCTATACCTGCAATTTATGCTGCAAAATTACAAGGAGTTCCCAAGTCTGGGTCGGGGCAGGTGTTCCTTGCTTATGGATTGCTAGTGAAGCCTTCATTTCAGAACGTTTTGGTGCAATCTGGAACTGACATAACTTTAAACAGCTCCAATGAAGGAGTTCTTCTACCAAGTCAGTCGATTGGAAAATCTAAGAAGAGTTTAGATGTACAGGGTGGAGTCGTTGCATTAGATCGAGCTAATGCTGAAGATGCTTTACGGCCAATTCCAAAGGTTTTCAATTCTCAAGAGAAAAGTACCTTATATCAAGATTTGCAAGTTGACCGCAGTGATGTGATGACTCAATTGGTTGACAGTGGGAGCCGATTAGAAGATGATGTCAGAGTGAAGGACTCTGCAGCAGTTTGCATGGAGGACCAACTTCGATCGTTAGGCATACTCCATAATACAGATGATCATATGTTTGAGTCCATTCTTAAGTTGGCGATATCCAAGGGCATTGATCTCGAAGCTAACATGTCACAGAAAAAGTTAAGAGAAGCAGTTTTATCATTAGCACCAGGCGATGCATACAAGTTACTCGGAAACTTGGTTAACATCTGGCAATCAAGGTTGCATTGTGGAAAGAATGTTCTACCATGGATATACAGTTTATTGTTGAATCACAGTCAACATATCTTGTCTCAAGAACAATCGGCCCAGATGCTCGATTCTTTATTTAAGATTACCAAATCCAAAGAGACTGCGGTTCAGCCTCTTCTTCAATTATCAGGTCGTTTGCAGTTGGTGTTGGCACAAATTGAAAGGGCATCAACCAACAAAACCGAACAAACAATTCAAGACAGTCTTGAAATAGCTGGAAGTGAGAGCAGCGATGACGACGACGATGAAGATGAAGACGATGAAGTTGATGATGTTCTTTACGGGGAAGAAGAAAATGAATCTGAATTAAGTAGTGATGATGAGAAATAG 2022 41.79 MTIKGFSFFFSTPASLSLLAVQRRRRHSAARAATAYLLVGCIEIMGFSNIRDLLTSFSPDLHFFAISSGDGRIKIWDTLKGQIQTEFADFFTSDSTSILTKPEKGHLSVDYKCMKWLSLEKKRKRKRQCLLLLLGTGSGDVLALDVAAGELKWKISDCHPGGVASISFPTHGSCIYTAGADGMLCEINSLTGNLLRKFKASTKAISCISVSPDGKIIATAASQVKIFNCSNHKKIQKFSGHPGAVRCMVFTEDGRYILSSAVGERYIVVWSVDGGKEQSASCVLAIEHPAIFVDSRCSNDGGDETALYILAISEIGVCYLWYGQNLEELRSAKPTKVLMSGNDIFSKSKKRAIPAIYAAKLQGVPKSGSGQVFLAYGLLVKPSFQNVLVQSGTDITLNSSNEGVLLPSQSIGKSKKSLDVQGGVVALDRANAEDALRPIPKVFNSQEKSTLYQDLQVDRSDVMTQLVDSGSRLEDDVRVKDSAAVCMEDQLRSLGILHNTDDHMFESILKLAISKGIDLEANMSQKKLREAVLSLAPGDAYKLLGNLVNIWQSRLHCGKNVLPWIYSLLLNHSQHILSQEQSAQMLDSLFKITKSKETAVQPLLQLSGRLQLVLAQIERASTNKTEQTIQDSLEIAGSESSDDDDDEDEDDEVDDVLYGEEENESELSSDDEK* 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21973529 21980846 + Chy11G201210.1 Chy11g01541 237302

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01541 673 MobiDBLite consensus disorder prediction 625 673 - -
Chy11g01541 673 ProSiteProfiles Trp-Asp (WD) repeats profile. 56 86 IPR001680 GO:0005515
Chy11g01541 673 ProSiteProfiles Trp-Asp (WD) repeats profile. 238 280 IPR001680 GO:0005515
Chy11g01541 673 Gene3D - 187 322 IPR015943 GO:0005515
Chy11g01541 673 Gene3D - 47 186 IPR015943 GO:0005515
Chy11g01541 673 Pfam WD domain, G-beta repeat 50 77 IPR001680 GO:0005515
Chy11g01541 673 Pfam WD domain, G-beta repeat 192 220 IPR001680 GO:0005515
Chy11g01541 673 Pfam WD domain, G-beta repeat 234 271 IPR001680 GO:0005515
Chy11g01541 673 PANTHER OS03G0300300 PROTEIN 45 673 - -
Chy11g01541 673 PANTHER OS03G0300300 PROTEIN 45 673 - -
Chy11g01541 673 SMART WD40_4 191 228 IPR001680 GO:0005515
Chy11g01541 673 SMART WD40_4 46 77 IPR001680 GO:0005515
Chy11g01541 673 SMART WD40_4 231 271 IPR001680 GO:0005515
Chy11g01541 673 SMART WD40_4 148 188 IPR001680 GO:0005515
Chy11g01541 673 MobiDBLite consensus disorder prediction 637 673 - -
Chy11g01541 673 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 56 276 IPR011047 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01541 K14546 UTP5, WDR43; U3 small nucleolar RNA-associated protein 5 - csv:101213788 1134.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02012 Chy-Chr1:25057419 Chy11g01541 Chy-Chr11:21973529 5.58E-44 dispersed
Chy11g01541 Chy-Chr11:21973529 Chy03g00014 Chy-Chr3:206607 4.73E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g131 . . . . . . . . Cmo08g01221 . . . . . . . . . . . . . . . Cla06g00453 Cam06g0483 Cec06g0487 Cco06g0486 Clacu06g0470 Cmu06g0470 Cre06g1244 . . . . . Csa06g01770 Chy11g01541 . . . . . . . . . . . . Cma08g01250 . Car08g01123 . . Cpe17g00044 Bhi12g02020 . . . Hepe03g0074 . . . . . . . . . Lsi09g01461 . . Cme11g02049
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007402 1 2 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 0 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01541 Chy_Chr11 FPKM 34.347057 34.322109 68.08638 55.279995 24.954323 36.76236 26.694603 211.904617 234.238495 230.84639