Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01546 ATGGATCTCAGCCACATGAAGGGACCGACACCGACACCGACGCCGACTTCAATTTCTGCTAGAAAAGCCACGGATATGAGTTCTGATCAGTTTCCGGCGGGTCTTCGGGTTCTGGTTGTAGACGACGATCCTACCTGTCTCAAGATCTTGGAAAAGATGCTTCAGAATTGCTGCTATGCTGTGACGAAATGCAACCGAGCGGAGATTGCTCTATCCATGCTTCGTGAGAACAAAAATGGTTTTGATATTGTCTTAAGTGATGTGCATATGCCTGACATGGATGGATTCAAGCTTCTAGAGCAAGTTGGGCTGGAGATGGACTTGCCTGTTATCATGATGTCAGCTGATGATGGGAAGAATGTTGTGATGAAAGGAGTGATTCATGGTGCTTGTGATTACCTTATCAAACCTGTTCGTATTGAAGCACTCAGGAACCTATGGCAACATGTAGTTCGGAAGAGAAAGACTGAATGGAAGGATTTAGAGCAATCTGGCAGCGTGGACGAGGGAGATCGAGAGCAAAATCTGTCTGAAGGTGCAAATTATTCATCTTCGGCATATGAAGGAAGTTGGAACAGCTCAAAGAGGAGGAGGGATGCAGAAGAAGAGCCTGAGGAGAGGGACGATACATCAACTTTAAAGAAGCCGAGGGTGGTATGGTCAGTTGAGCTCCATCAACAGTTTGTTGCCGCAGTTAATCAGCTAGGGATTGACAAGGCTGTCCCTAAGAAGATATTGGAGTTGATGAATGTTCCAGGGCTTACTAGAGAAAATGTTGCCAGTCATCTTCAGAAATATCGCTTATATCTTAGAAGGCTTAGTGGAGTATCTCCACACCAAAGTAATTTGAACAATTCTTTTATCAACCCCCAAGACCCACCTTTTGGATCGATGGGTTCATTCAATGGGATCGATCTTCAGACGCTTTCGGTCACTGGCCAACTCTCGCCACAAAGTCTTGCTGCCCTCCAAGCAACAGGACTTCGTAGGCCTACTGCGAAATCTGGCATATCCATGGCCCTTGATCAGAACAATATATTCAGCTTTGAAAATCCAAAATTGAGGTTTGTTGAGGACCAAACACAACATCTAAATAATAGTAAACCAGTAAACTTGTTTCATGGGATTCCAACAAAAATGGAGCCAAAGCAACTTGCGAATATTCAGCACCCTTCCGTGCAGCCTCAGGGAAACATAAACATGCAACTCAATATCAAGAGCGAACATGGTGGAACTCAACTAATGCATTTGTCTCAACAACAAGCTATAGGACAAACTCTAGGTAACTCTCCTGCTAGCCACTTACCCAGAATTTCATCAACATTAAGGAAACCGATCATATCAGATAGTGTTATGAGGGGAAATGGGACTGCTGATAATAGTCACAGACCTGGATACAACCTAGTTTCGCCAACATCGGTGATGGTGAACTATCCAATGAGCCAAACCACAGAATTGTCTAACAATTATTCCCTTCAGAGCAATTCATCTGTATCTACCCTGAACTGTAAAGGGATGTTTCAAGAAGAGATTAGTTCAGATCTAAAAGTTTCGGGCGGACTAATGTCGAGTTATGATGTTTTTAGTGACTTGCCCGTGCAGAAATCCCATGACTGGGATTCTCAAAATGTTAGCACCTTGGCCTTTGGTACTTTTCACCATGGGAACTTCATACAGGATAGCTTTGATATCTCATCCTCCACTTTAATTCATCATGGTTTTCCTTCAAGCCAAACGAATGGACAAAATCTAAATTCATCGGTCGTTGGAAAGACTGTGTTTTCCTTTTCGGATTTGACTCAACCCGAAAATCCTCAAAATATTGCCCAAAACTCACTTCTCGATCCTGTGGAGGTCAAATCTCAGAGAATCCCCGATGCAAACTATCAAACTGACCTTTCATCCGAGGACTTTGGCCAGGATGAACTTCTTGGTGTCTTTCTCAAACAACAGGACGAGTGTGAAACTATTTTGTTTGTAACGGGCACATCGCTCGATTGTCGTCGATGCAAGGCTCCGCTCGGCTCCATTGCATTTGAAACCATTTAG 2049 43.68 MDLSHMKGPTPTPTPTSISARKATDMSSDQFPAGLRVLVVDDDPTCLKILEKMLQNCCYAVTKCNRAEIALSMLRENKNGFDIVLSDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDGKNVVMKGVIHGACDYLIKPVRIEALRNLWQHVVRKRKTEWKDLEQSGSVDEGDREQNLSEGANYSSSAYEGSWNSSKRRRDAEEEPEERDDTSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSPHQSNLNNSFINPQDPPFGSMGSFNGIDLQTLSVTGQLSPQSLAALQATGLRRPTAKSGISMALDQNNIFSFENPKLRFVEDQTQHLNNSKPVNLFHGIPTKMEPKQLANIQHPSVQPQGNINMQLNIKSEHGGTQLMHLSQQQAIGQTLGNSPASHLPRISSTLRKPIISDSVMRGNGTADNSHRPGYNLVSPTSVMVNYPMSQTTELSNNYSLQSNSSVSTLNCKGMFQEEISSDLKVSGGLMSSYDVFSDLPVQKSHDWDSQNVSTLAFGTFHHGNFIQDSFDISSSTLIHHGFPSSQTNGQNLNSSVVGKTVFSFSDLTQPENPQNIAQNSLLDPVEVKSQRIPDANYQTDLSSEDFGQDELLGVFLKQQDECETILFVTGTSLDCRRCKAPLGSIAFETI* 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22011151 22015262 + Chy11G201260.1 Chy11g01546 237307

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01546 682 MobiDBLite consensus disorder prediction 158 175 - -
Chy11g01546 682 MobiDBLite consensus disorder prediction 158 212 - -
Chy11g01546 682 MobiDBLite consensus disorder prediction 1 25 - -
Chy11g01546 682 Gene3D - 35 172 - -
Chy11g01546 682 MobiDBLite consensus disorder prediction 192 212 - -
Chy11g01546 682 ProSiteProfiles Response regulatory domain profile. 36 151 IPR001789 GO:0000160
Chy11g01546 682 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 214 271 IPR017930 -
Chy11g01546 682 Gene3D - 212 274 - -
Chy11g01546 682 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 646 - -
Chy11g01546 682 PIRSF RR_ARR_type-B 17 658 IPR017053 GO:0003677|GO:0003700|GO:0009736
Chy11g01546 682 SMART REC_2 35 147 IPR001789 GO:0000160
Chy11g01546 682 CDD REC_typeB_ARR-like 37 151 - -
Chy11g01546 682 SUPERFAMILY Homeodomain-like 212 272 IPR009057 -
Chy11g01546 682 SUPERFAMILY CheY-like 34 159 IPR011006 -
Chy11g01546 682 Pfam Response regulator receiver domain 37 145 IPR001789 GO:0000160
Chy11g01546 682 MobiDBLite consensus disorder prediction 176 191 - -
Chy11g01546 682 Pfam Myb-like DNA-binding domain 217 267 IPR001005 -
Chy11g01546 682 MobiDBLite consensus disorder prediction 9 25 - -
Chy11g01546 682 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 646 IPR045279 GO:0009736
Chy11g01546 682 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 215 268 IPR006447 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01546 - - K14491 csv:101210138 1249.19
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy06g00735 Chy11g01546 CCT
Chy06g00735 Chy11g01546 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02099 Chy-Chr2:25279827 Chy11g01546 Chy-Chr11:22011151 5.32E-108 dispersed
Chy06g00910 Chy-Chr6:6670707 Chy11g01546 Chy-Chr11:22011151 2.16E-52 dispersed
Chy07g00343 Chy-Chr7:2803571 Chy11g01546 Chy-Chr11:22011151 3.88E-110 dispersed
Chy11g00433 Chy-Chr11:4223862 Chy11g01546 Chy-Chr11:22011151 1.24E-14 dispersed
Chy11g01546 Chy-Chr11:22011151 Chy11g01951 Chy-Chr11:25550683 3.68E-27 dispersed
Chy03g01687 Chy-Chr3:18548026 Chy11g01546 Chy-Chr11:22011151 3.07E-96 transposed
Chy09g01472 Chy-Chr9:16142628 Chy11g01546 Chy-Chr11:22011151 2.08E-23 transposed
Chy01g01728 Chy-Chr1:23050186 Chy11g01546 Chy-Chr11:22011151 9.57E-08 wgd
Chy11g01546 Chy-Chr11:22011151 Chy06g00735 Chy-Chr6:5017383 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g113 Blo01g00060 . Bda03g01158 Bda08g00304 Bpe04g01103 . Bma04g01144 Bma05g01022 Cmo08g01225 Cmo17g00339 Cma06g01548 . Car06g01314 Car14g01419 Sed02g1152 Cpe08g00165 Cpe03g01344 Bhi01g01057 Tan10g1051 Cmetu11g1360 Lac11g0905 Hepe05g1404 . Lcy11g1369 Cla06g00448 Cam06g0476 Cec06g0481 Cco06g0479 Clacu06g0463 Cmu06g0463 Cre06g1238 Cone14ag0738 Cone15ag0748 Cone7ag0120 Cone4ag0123 . Csa06g01765 Chy11g01546 . . Blo07g00160 . . Bpe05g00823 Bpe13g00682 . Bma06g01483 . . Cmo14g01636 Cma08g01254 Cma17g00351 Car08g01126 Car17g00322 Cpe12g00300 Cpe17g00047 Bhi12g01899 . . . . . Lcy12g0777 Cla05g00679 Cam05g0746 Cec05g0752 Cco05g0752 Clacu05g0738 Cmu05g0703 Cre05g0777 Lsi09g01466 Csa03g01497 Chy06g00735 Cme11g02055
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy07g00343 . 52 346 Response Regulator Gene Family AT3G16857 53.3 4.4e-60 229.6
Chy03g01687 . 52 256 Response Regulator Gene Family AT3G16857 53.8 2.1e-54 210.7
Chy05g01262 . 59 316 Response Regulator Gene Family AT3G16857 52.2 1.2e-52 204.9
Chy02g02099 . 18 383 Response Regulator Gene Family AT4G31920 54.5 4.3e-91 332.4
Chy07g00343 . 1 413 Response Regulator Gene Family AT4G31920 52.5 1.5e-88 323.9
Chy05g01262 . 13 340 Response Regulator Gene Family AT4G31920 54.8 4.2e-78 289.3
Chy11g01546 CCT,ECH 29 282 Response Regulator Gene Family AT4G31920 55.1 2.9e-71 266.5
Chy06g00735 CCT,ECH 16 270 Response Regulator Gene Family AT4G31920 53.4 1.6e-69 260.8
Chy03g01687 . 11 259 Response Regulator Gene Family AT4G31920 50.4 5.4e-62 235.7
Chy06g00735 CCT,ECH 99 261 Response Regulator Gene Family AT1G67710 53.8 2.4e-39 160.2
Chy02g02099 . 16 390 Response Regulator Gene Family AT2G25180 55.9 1.5e-102 370.5
Chy05g01262 . 17 359 Response Regulator Gene Family AT2G25180 54.4 1.8e-82 303.9
Chy06g00735 CCT,ECH 18 290 Response Regulator Gene Family AT2G25180 55.0 4.5e-78 289.3
Chy03g01687 . 11 256 Response Regulator Gene Family AT2G25180 55.6 1.1e-68 258.1
Chy11g01546 CCT,ECH 90 323 Response Regulator Gene Family AT2G01760 50.6 3.5e-53 205.7
Chy02g02099 . 79 303 Response Regulator Gene Family AT2G01760 53.1 8.0e-50 194.5
Chy03g01687 . 72 259 Response Regulator Gene Family AT2G01760 51.0 3.4e-48 189.1
Chy03g01687 . 9 258 Response Regulator Gene Family AT5G58080 50.6 8.2e-62 235.3
Chy11g01546 CCT,ECH 27 253 Response Regulator Gene Family AT4G16110 66.0 2.6e-79 293.5
Chy06g00735 CCT,ECH 12 241 Response Regulator Gene Family AT4G16110 65.3 1.7e-78 290.8
Chy07g00343 . 12 233 Response Regulator Gene Family AT4G16110 71.0 3.2e-61 233.4
Chy03g01687 . 10 235 Response Regulator Gene Family AT4G16110 54.5 1.2e-58 224.9
Chy02g02099 . 17 249 Response Regulator Gene Family AT4G16110 53.4 1.1e-56 218.4
Chy05g01262 . 12 266 Response Regulator Gene Family AT4G16110 52.0 2.3e-51 200.7
Chy02g02547 . 30 162 Response Regulator Gene Family AT3G48100 76.7 2.5e-51 198.7
Chy10g00941 . 29 162 Response Regulator Gene Family AT3G48100 72.4 5.5e-51 197.6
Chy10g01363 . 12 168 Response Regulator Gene Family AT3G48100 55.4 2.8e-39 158.7
Chy08g00289 . 17 164 Response Regulator Gene Family AT3G48100 54.7 5.9e-37 151.0
Chy10g00941 . 1 175 Response Regulator Gene Family AT1G59940 65.4 5.8e-56 214.9
Chy02g02547 . 9 158 Response Regulator Gene Family AT1G59940 62.3 8.4e-47 184.5
Chy10g01363 . 7 156 Response Regulator Gene Family AT1G59940 58.7 3.1e-41 166.0
Chy10g00941 . 18 185 Response Regulator Gene Family AT1G10470 67.9 4.9e-55 211.5
Chy02g02547 . 29 167 Response Regulator Gene Family AT1G10470 66.2 4.6e-45 178.3
Chy10g01363 . 7 156 Response Regulator Gene Family AT1G10470 56.7 2.9e-39 159.1
Chy02g02547 . 30 162 Response Regulator Gene Family AT3G48100 76.7 2.5e-51 198.7
Chy10g00941 . 29 162 Response Regulator Gene Family AT3G48100 72.4 5.5e-51 197.6
Chy10g01363 . 12 168 Response Regulator Gene Family AT3G48100 55.4 2.8e-39 158.7
Chy08g00289 . 17 164 Response Regulator Gene Family AT3G48100 54.7 5.9e-37 151.0
Chy02g02547 . 23 163 Response Regulator Gene Family AT5G62920 73.8 9.5e-51 196.8
Chy10g00941 . 25 175 Response Regulator Gene Family AT5G62920 68.2 3.0e-49 191.8
Chy10g01363 . 2 171 Response Regulator Gene Family AT5G62920 52.0 8.3e-39 157.1
Chy08g00289 . 17 164 Response Regulator Gene Family AT5G62920 54.7 7.8e-37 150.6
Chy02g02547 . 29 162 Response Regulator Gene Family AT1G19050 74.6 2.6e-49 192.2
Chy10g00941 . 28 185 Response Regulator Gene Family AT1G19050 60.4 1.1e-44 176.8
Chy10g01363 . 9 153 Response Regulator Gene Family AT1G19050 55.2 1.0e-37 153.7
Chy08g00289 . 8 270 Response Regulator Gene Family AT2G41310 51.0 1.4e-56 216.5
Chy10g01363 . 3 149 Response Regulator Gene Family AT2G41310 66.0 3.1e-48 188.7
Chy03g00788 . 20 160 Response Regulator Gene Family AT2G41310 62.7 1.4e-43 173.3
Chy10g00941 . 25 158 Response Regulator Gene Family AT2G41310 58.9 2.8e-41 165.6
Chy02g02547 . 28 159 Response Regulator Gene Family AT2G41310 61.9 8.2e-41 164.1
Chy08g00289 . 8 270 Response Regulator Gene Family AT3G57040 51.5 8.2e-60 227.3
Chy10g01363 . 8 149 Response Regulator Gene Family AT3G57040 70.4 4.5e-50 194.9
Chy03g00788 . 20 194 Response Regulator Gene Family AT3G57040 53.6 3.4e-45 178.7
Chy10g00941 . 25 158 Response Regulator Gene Family AT3G57040 59.4 3.1e-43 172.2
Chy02g02547 . 25 159 Response Regulator Gene Family AT3G57040 61.8 1.0e-41 167.2
Chy02g02547 . 24 182 Response Regulator Gene Family AT1G74890 69.3 4.3e-52 201.4
Chy10g00941 . 25 187 Response Regulator Gene Family AT1G74890 61.8 2.4e-47 185.7
Chy10g01363 . 2 159 Response Regulator Gene Family AT1G74890 57.6 1.5e-41 166.4
Chy10g00941 . 26 159 Response Regulator Gene Family AT2G40670 55.5 1.5e-39 159.5
Chy02g02547 . 29 160 Response Regulator Gene Family AT2G40670 57.8 5.3e-37 151.0
Chy10g00941 . 26 159 Response Regulator Gene Family AT3G56380 54.8 2.8e-40 161.8
Chy02g02547 . 24 160 Response Regulator Gene Family AT3G56380 58.0 1.4e-39 159.5
Chy10g01363 . 2 148 Response Regulator Gene Family AT3G56380 54.7 1.7e-37 152.5
Chy07g00343 . 52 346 Response Regulator Gene Family AT3G16857 53.3 4.4e-60 229.6
Chy03g01687 . 52 256 Response Regulator Gene Family AT3G16857 53.8 2.1e-54 210.7
Chy05g01262 . 59 316 Response Regulator Gene Family AT3G16857 52.2 1.2e-52 204.9
Chy11g01546 CCT,ECH 27 253 Response Regulator Gene Family AT4G16110 66.0 2.6e-79 293.5
Chy06g00735 CCT,ECH 12 241 Response Regulator Gene Family AT4G16110 65.3 1.7e-78 290.8
Chy07g00343 . 12 233 Response Regulator Gene Family AT4G16110 71.0 3.2e-61 233.4
Chy03g01687 . 10 235 Response Regulator Gene Family AT4G16110 54.5 1.2e-58 224.9
Chy02g02099 . 17 249 Response Regulator Gene Family AT4G16110 53.4 1.1e-56 218.4
Chy05g01262 . 12 266 Response Regulator Gene Family AT4G16110 52.0 2.3e-51 200.7
Chy02g02099 . 18 383 Response Regulator Gene Family AT4G31920 54.5 4.3e-91 332.4
Chy07g00343 . 1 413 Response Regulator Gene Family AT4G31920 52.5 1.5e-88 323.9
Chy05g01262 . 13 340 Response Regulator Gene Family AT4G31920 54.8 4.2e-78 289.3
Chy11g01546 CCT,ECH 29 282 Response Regulator Gene Family AT4G31920 55.1 2.9e-71 266.5
Chy06g00735 CCT,ECH 16 270 Response Regulator Gene Family AT4G31920 53.4 1.6e-69 260.8
Chy03g01687 . 11 259 Response Regulator Gene Family AT4G31920 50.4 5.4e-62 235.7
Chy06g00735 CCT,ECH 99 261 Response Regulator Gene Family AT1G67710 53.8 2.4e-39 160.2
Chy02g02099 . 16 390 Response Regulator Gene Family AT2G25180 55.9 1.5e-102 370.5
Chy05g01262 . 17 359 Response Regulator Gene Family AT2G25180 54.4 1.8e-82 303.9
Chy06g00735 CCT,ECH 18 290 Response Regulator Gene Family AT2G25180 55.0 4.5e-78 289.3
Chy03g01687 . 11 256 Response Regulator Gene Family AT2G25180 55.6 1.1e-68 258.1
Chy11g01546 CCT,ECH 90 323 Response Regulator Gene Family AT2G01760 50.6 3.5e-53 205.7
Chy02g02099 . 79 303 Response Regulator Gene Family AT2G01760 53.1 8.0e-50 194.5
Chy03g01687 . 72 259 Response Regulator Gene Family AT2G01760 51.0 3.4e-48 189.1
Chy03g01687 . 9 258 Response Regulator Gene Family AT5G58080 50.6 8.2e-62 235.3
Chy12g01526 . 35 584 Response Regulator Gene Family AT5G61380 50.5 4.1e-143 505.4
Chy08g00806 . 38 206 Response Regulator Gene Family AT5G60100 68.6 2.1e-55 213.4
Chy09g01472 . 50 187 Response Regulator Gene Family AT5G60100 61.6 2.0e-45 180.3
Chy08g00806 . 67 206 Response Regulator Gene Family AT5G24470 55.7 3.8e-39 159.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001295 2 3 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18769 PF00072 Response_reg 9.00E-22 CL0304 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01546 Chy_Chr11 FPKM 1.682731 1.07224 0.628598 0.888128 2.220387 1.6324 2.88496 1.00373 0.508685 0.401955