Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01546 ATGGATCTCAGCCACATGAAGGGACCGACACCGACACCGACGCCGACTTCAATTTCTGCTAGAAAAGCCACGGATATGAGTTCTGATCAGTTTCCGGCGGGTCTTCGGGTTCTGGTTGTAGACGACGATCCTACCTGTCTCAAGATCTTGGAAAAGATGCTTCAGAATTGCTGCTATGCTGTGACGAAATGCAACCGAGCGGAGATTGCTCTATCCATGCTTCGTGAGAACAAAAATGGTTTTGATATTGTCTTAAGTGATGTGCATATGCCTGACATGGATGGATTCAAGCTTCTAGAGCAAGTTGGGCTGGAGATGGACTTGCCTGTTATCATGATGTCAGCTGATGATGGGAAGAATGTTGTGATGAAAGGAGTGATTCATGGTGCTTGTGATTACCTTATCAAACCTGTTCGTATTGAAGCACTCAGGAACCTATGGCAACATGTAGTTCGGAAGAGAAAGACTGAATGGAAGGATTTAGAGCAATCTGGCAGCGTGGACGAGGGAGATCGAGAGCAAAATCTGTCTGAAGGTGCAAATTATTCATCTTCGGCATATGAAGGAAGTTGGAACAGCTCAAAGAGGAGGAGGGATGCAGAAGAAGAGCCTGAGGAGAGGGACGATACATCAACTTTAAAGAAGCCGAGGGTGGTATGGTCAGTTGAGCTCCATCAACAGTTTGTTGCCGCAGTTAATCAGCTAGGGATTGACAAGGCTGTCCCTAAGAAGATATTGGAGTTGATGAATGTTCCAGGGCTTACTAGAGAAAATGTTGCCAGTCATCTTCAGAAATATCGCTTATATCTTAGAAGGCTTAGTGGAGTATCTCCACACCAAAGTAATTTGAACAATTCTTTTATCAACCCCCAAGACCCACCTTTTGGATCGATGGGTTCATTCAATGGGATCGATCTTCAGACGCTTTCGGTCACTGGCCAACTCTCGCCACAAAGTCTTGCTGCCCTCCAAGCAACAGGACTTCGTAGGCCTACTGCGAAATCTGGCATATCCATGGCCCTTGATCAGAACAATATATTCAGCTTTGAAAATCCAAAATTGAGGTTTGTTGAGGACCAAACACAACATCTAAATAATAGTAAACCAGTAAACTTGTTTCATGGGATTCCAACAAAAATGGAGCCAAAGCAACTTGCGAATATTCAGCACCCTTCCGTGCAGCCTCAGGGAAACATAAACATGCAACTCAATATCAAGAGCGAACATGGTGGAACTCAACTAATGCATTTGTCTCAACAACAAGCTATAGGACAAACTCTAGGTAACTCTCCTGCTAGCCACTTACCCAGAATTTCATCAACATTAAGGAAACCGATCATATCAGATAGTGTTATGAGGGGAAATGGGACTGCTGATAATAGTCACAGACCTGGATACAACCTAGTTTCGCCAACATCGGTGATGGTGAACTATCCAATGAGCCAAACCACAGAATTGTCTAACAATTATTCCCTTCAGAGCAATTCATCTGTATCTACCCTGAACTGTAAAGGGATGTTTCAAGAAGAGATTAGTTCAGATCTAAAAGTTTCGGGCGGACTAATGTCGAGTTATGATGTTTTTAGTGACTTGCCCGTGCAGAAATCCCATGACTGGGATTCTCAAAATGTTAGCACCTTGGCCTTTGGTACTTTTCACCATGGGAACTTCATACAGGATAGCTTTGATATCTCATCCTCCACTTTAATTCATCATGGTTTTCCTTCAAGCCAAACGAATGGACAAAATCTAAATTCATCGGTCGTTGGAAAGACTGTGTTTTCCTTTTCGGATTTGACTCAACCCGAAAATCCTCAAAATATTGCCCAAAACTCACTTCTCGATCCTGTGGAGGTCAAATCTCAGAGAATCCCCGATGCAAACTATCAAACTGACCTTTCATCCGAGGACTTTGGCCAGGATGAACTTCTTGGTGTCTTTCTCAAACAACAGGACGAGTGTGAAACTATTTTGTTTGTAACGGGCACATCGCTCGATTGTCGTCGATGCAAGGCTCCGCTCGGCTCCATTGCATTTGAAACCATTTAG 2049 43.68 MDLSHMKGPTPTPTPTSISARKATDMSSDQFPAGLRVLVVDDDPTCLKILEKMLQNCCYAVTKCNRAEIALSMLRENKNGFDIVLSDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDGKNVVMKGVIHGACDYLIKPVRIEALRNLWQHVVRKRKTEWKDLEQSGSVDEGDREQNLSEGANYSSSAYEGSWNSSKRRRDAEEEPEERDDTSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSPHQSNLNNSFINPQDPPFGSMGSFNGIDLQTLSVTGQLSPQSLAALQATGLRRPTAKSGISMALDQNNIFSFENPKLRFVEDQTQHLNNSKPVNLFHGIPTKMEPKQLANIQHPSVQPQGNINMQLNIKSEHGGTQLMHLSQQQAIGQTLGNSPASHLPRISSTLRKPIISDSVMRGNGTADNSHRPGYNLVSPTSVMVNYPMSQTTELSNNYSLQSNSSVSTLNCKGMFQEEISSDLKVSGGLMSSYDVFSDLPVQKSHDWDSQNVSTLAFGTFHHGNFIQDSFDISSSTLIHHGFPSSQTNGQNLNSSVVGKTVFSFSDLTQPENPQNIAQNSLLDPVEVKSQRIPDANYQTDLSSEDFGQDELLGVFLKQQDECETILFVTGTSLDCRRCKAPLGSIAFETI* 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22011151 22015262 + Chy11G201260.1 Chy11g01546 237307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01546 682 MobiDBLite consensus disorder prediction 158 175 - -
Chy11g01546 682 MobiDBLite consensus disorder prediction 158 212 - -
Chy11g01546 682 MobiDBLite consensus disorder prediction 1 25 - -
Chy11g01546 682 Gene3D - 35 172 - -
Chy11g01546 682 MobiDBLite consensus disorder prediction 192 212 - -
Chy11g01546 682 ProSiteProfiles Response regulatory domain profile. 36 151 IPR001789 GO:0000160
Chy11g01546 682 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 214 271 IPR017930 -
Chy11g01546 682 Gene3D - 212 274 - -
Chy11g01546 682 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 646 - -
Chy11g01546 682 PIRSF RR_ARR_type-B 17 658 IPR017053 GO:0003677|GO:0003700|GO:0009736
Chy11g01546 682 SMART REC_2 35 147 IPR001789 GO:0000160
Chy11g01546 682 CDD REC_typeB_ARR-like 37 151 - -
Chy11g01546 682 SUPERFAMILY Homeodomain-like 212 272 IPR009057 -
Chy11g01546 682 SUPERFAMILY CheY-like 34 159 IPR011006 -
Chy11g01546 682 Pfam Response regulator receiver domain 37 145 IPR001789 GO:0000160
Chy11g01546 682 MobiDBLite consensus disorder prediction 176 191 - -
Chy11g01546 682 Pfam Myb-like DNA-binding domain 217 267 IPR001005 -
Chy11g01546 682 MobiDBLite consensus disorder prediction 9 25 - -
Chy11g01546 682 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 646 IPR045279 GO:0009736
Chy11g01546 682 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 215 268 IPR006447 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy06g00735 Chy11g01546 CCT
Chy06g00735 Chy11g01546 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02099 Chy-Chr2:25279827 Chy11g01546 Chy-Chr11:22011151 5.32E-108 dispersed
Chy06g00910 Chy-Chr6:6670707 Chy11g01546 Chy-Chr11:22011151 2.16E-52 dispersed
Chy07g00343 Chy-Chr7:2803571 Chy11g01546 Chy-Chr11:22011151 3.88E-110 dispersed
Chy11g00433 Chy-Chr11:4223862 Chy11g01546 Chy-Chr11:22011151 1.24E-14 dispersed
Chy11g01546 Chy-Chr11:22011151 Chy11g01951 Chy-Chr11:25550683 3.68E-27 dispersed
Chy03g01687 Chy-Chr3:18548026 Chy11g01546 Chy-Chr11:22011151 3.07E-96 transposed
Chy09g01472 Chy-Chr9:16142628 Chy11g01546 Chy-Chr11:22011151 2.08E-23 transposed
Chy01g01728 Chy-Chr1:23050186 Chy11g01546 Chy-Chr11:22011151 9.57E-08 wgd
Chy11g01546 Chy-Chr11:22011151 Chy06g00735 Chy-Chr6:5017383 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18769 PF00072 Response_reg 9.00E-22 CL0304 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01546 - K14491 csv:101210138 1249.19