Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01554 ATGGCGGATCATCAAAGAGACGGAGGGGAAAACTACTTCCCCTTCCATCAAAACAAGGAAGTAGCAGGAGGAGGAAGTGGGAATAGATATGGAGGACTTACCCCAAAAAAGAAGCCATTGATTTCAAAGGATCATGAACGTGCGTTCTTTGATTCTGCAGATTGGGCCTTGTGCAAGCAAGGAGCAGGACTCTATAACAACATGGCACTTGAAAAACTACAGCCTAAACTTCAGAGGACCCCAAGGCCACAGCTTCCACCAAGAAGGCCAGTCTGTACATCCGACAAGGGCAATATCGTTTCGGTCGGAAAATGTGATGATTTTGAGAGTGGTTCAACGGGTAGTTCAGTAGGTTTTGAGGACCCGCCTGAGATTGTTGCCAAAGCATTGCTATGCTTTAATGACAGATATATATACAGCGCGTGTGAAGAATCGTATAGATTAAAGGAGAGTGGGAATCTTGAAGTACCACTAGAGAAAACGGATGAATATTGCAACGGACCGTGTTTGAGTGAAACGGAGTTGGTGTTGGAATGCATTAATGGCATTTTTAGCAACTTCTTGTTTTACAATAGAGCCACCTTGCAAGATGTTACGGATACTGTCCACGCTGGATGTGGCTATGGCCCACAAAGAGGAAACTTTAATGTTTTGGAGCATATAAATGCAGAAAGAGGCAATGCTTGTAGGGCGTCCAACATGGCAGTTCTTGGATTTTCCTTTTTCATTTTAGGCCTTCTTAGCTTATTGCTTTGA 756 43.78 MADHQRDGGENYFPFHQNKEVAGGGSGNRYGGLTPKKKPLISKDHERAFFDSADWALCKQGAGLYNNMALEKLQPKLQRTPRPQLPPRRPVCTSDKGNIVSVGKCDDFESGSTGSSVGFEDPPEIVAKALLCFNDRYIYSACEESYRLKESGNLEVPLEKTDEYCNGPCLSETELVLECINGIFSNFLFYNRATLQDVTDTVHAGCGYGPQRGNFNVLEHINAERGNACRASNMAVLGFSFFILGLLSLLL* 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22072058 22081406 - Chy11G201340.1 Chy11g01554 237315

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01554 251 PANTHER OS07G0289901 PROTEIN 110 247 - -
Chy11g01554 251 MobiDBLite consensus disorder prediction 1 35 - -
Chy11g01554 251 PANTHER OS07G0289901 PROTEIN-RELATED 110 247 - -
Chy11g01554 251 Pfam cAMP-regulated phosphoprotein/endosulfine conserved region 29 91 IPR006760 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01554 - - - csv:101212342 274.248
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy11g01554 Chy-Chr11:22072058 Chy06g01005 Chy-Chr6:7595783 2.30E-14 dispersed
Chy08g01072 Chy-Chr8:17880471 Chy11g01554 Chy-Chr11:22072058 4.83E-30 transposed
Chy11g01554 Chy-Chr11:22072058 Chy06g00743 Chy-Chr6:5077936 1.18E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g101 . . . . . . . . Cmo08g01233 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g01756 Chy11g01554 . . Blo07g00157 . . . . . Bma06g01479 Sed04g4010 . . Cma08g01263 . Car08g01133 . . Cpe17g00054 Bhi12g01908 Tan06g2736 Cmetu11g1056 . . . . . . . . . . . Lsi09g01473 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003120 0 2 0 2 1 2 2 2 2 2 1 2 2 2 2 1 2 3 2 2 2 2 2 2 2 1 1 2 2 1 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01554 Chy_Chr11 FPKM 14.922758 13.838924 12.951986 15.904696 12.920006 14.287641 12.214957 21.775343 21.952332 21.631172