Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01557 ATGTCGCTGTCCATGAAAGCTGACGTTCAAGGAAACCTTGTTGGCTCGGAGATTCATGGCTTCCATACATTGCAAGATTTGGATGTTGAAAACATCAGGGAGGAAGCAAGTGCAAGATGGCTTCGTCCAAATGAAATCCATGCGATACTGTGTAACTACAAATATTTCACCATCCACGTCAAACCAGTGAACTTGCCCAAAAGTGGAACCATTGTATTATTTGACCGCAAGATGCTTAGGAATTTTCGCAAAGATGGACATAATTGGAAGAAAAAAAAGGATGGAAAGACAGTAAAAGAAGCACATGAACACCTAAAAGTTGGTAATGTAGAAAGGATACATGTATACTATGCCCATGGACTAGATAGCCCAACCTTTGTTCGCCGGTGTTATTGGCTCCTAGATAAGACCCTTGAACACATTGTCCTCGTTCATTACCGTGAAAAAGAGAATTCTCCATCCACATCGTTGAACTCAAATTCTGGTTCTGTCTCAAACCCATCAACTCCGTGGCTTTTATCGGAGGAACTTGATTCCAAGGCTACTCATGTTTATTCTGTTGGTGAAAATAAATTGTCAGAGCCTAGTGACACTACAACAGTCATGACTCATGAACAGCGGCTTCATGAGATCAACACACTTGAGTGGGATGACCTTCTTGTGAAGGACGAGCCTTTCAAACCTGCCATGCCTAAAGGAGACAAACTTTCATGCTTTGACCAACAGAACCAAGTCCCAATAAACGCGACCAGCAATTTGTTGGGGGAGATGTCTTCATTTAGTAATCCAGTTGAGTCAACTGGGAGGGCCAACGGCAATATCAGTTTCACCGGAAGTGCCAATCTGTTGCTAGGTGGTCAAACAAATTTGAATATAGAGAAGAGGGAATCCATTGCAATTAATTCTACGGACAATTTGTTAGATGAGAGACTGCAAAGTCAGGACAGCTTTGGGCGATGGATAAATGAAGTTATCATTGAGTCTCCTGGTTCAGTCATTGATCCTGCTATTGAACCATCCATTTCATCTGTTCACAATTCCTATCGTGATTCAACATTATATCACAGTCAAACTTTGGCTATGGAGCAAATTTTTAACATAACTGATGTCTCACCTACATGGGCCTTTTCAACAGAAAAAACAAAGATTCTAATTATTGGGTATTTTCAGAATGACTTTGTACATCTAGCAAAGTCCAACTTATTGGTTGTATGTGGTGATACCAGTGTTAATGTTGATTTTGTTCAACCTGGAGTTTATCGCTGTCTAGTACCACCACATGCACCTGGACTAGTACATTTATATGTGAGCGTAGATGGCCACAAACCTATTAGTCAAGCTCTAAATTTTGAGTATCGTGCACCAAATTTAGAAGTTCCTGTAGTTGCTTCAGAACAGAGCCAAAAGTGGGAAGAGTTTCAAATCCAGATGCGGCTTGCTCATATGTTGTTCTCTACATCCAAGATTCTGAGCATCATTTCAACTAAATTGTTGCCCACTGCCCTGCAGGAGGCTAAGAAACTTGCTGTAAAAACTGCCGACATTTCTGATAGTTGGATTTATTTGTTAAAGTCAATTACAGAAAATAGAACTCCATTTCAACAAGCAAGGGAAGGGGTTCTTGAGATCGTGCTGAGAAGCAGGTTAAGGGAATGGCTGATAGAAAGAGTTGCTGAAGGCTCAAAGAAAAGCACTGAGTTTGATGTAAATGGTCAAGGAGTAATCCATTTGTGTGCAATATTGGGATATACCTGGGCTGTACATCTATTTGACTGGGCGGGTTTGTCAATAAACTTCCGAGATAAATTTGGATGGACAGCTCTTCACTGGGCAGCTTATTATGGAAGGGAGAGAATGGTTGCCGTTCTTTTATCAGCGGGGGCAAAGCCAAACTTGGTCACTGATCCCTCATCAAAGAACCCTCTGGGATGTACAGCTGCAGATCTTGCATCTATGAATGGTTATGATGGCTTAGCTGCATATCTTTCTGAAAAGGCTTTGGTATCACACTTCAAAGAGATGAGCTTGGCTGGAAATGTCAGTGGCTCGTTGGATACTAGTAGTACAATAACTGATGCCTCTGATTGCATCACCGAGGAGCAGATGTATATGAAAGAAACATTAGCAGCTTACCGAACAGCAGCTGATGCAGCATCACGTATACAAGCTGCATTTCGTGAACATTCTTTAAAACAACGATCTGATAGAATTGAATTATCCTCCCCAGAAGATGAGGCTCGTAGTATTATTGCAGCCATGAAAATTCAACATGCCTACCGCAATTTTGAGACACGAAAAAAAATGGCAGCTGCTGCTCGTATCCAATACAGATTCCGTACTTGGAAGATCCGCAAAGACTTCCTTAATATGCGTCGTCAAACTATTAGAATTCAAGCTGCATTTAGAGGCTTCCAAGTACGGAGGCAGTATCGCAAGATTGTTTGGTCAGTAGGTGTACTTGAGAAAGCTATACTGCGCTGGCGTCTTAAGAGAAAAGGTTTCCGTGGGCTTCAAGTTGCACCTACTGAAATGGTGGAAAAGCAGGAAAGTGACGTAGAAGAGGACTTCTACCTTGTATCTCAAAAACAAGCAGAAGAGCGAGTTGAGAGAGCTGTTGTTCGTGTTCAGGCTATGTTTCGATCAAAGAAAGCACAAGAAGAGTATCGTAGGATGAGGTTAACTTGTGATGAAGCAGCGTTGGAATATGAAGTACTTTCACATCCTATGTATGGCAATGATTAA 2742 41.58 MSLSMKADVQGNLVGSEIHGFHTLQDLDVENIREEASARWLRPNEIHAILCNYKYFTIHVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNVERIHVYYAHGLDSPTFVRRCYWLLDKTLEHIVLVHYREKENSPSTSLNSNSGSVSNPSTPWLLSEELDSKATHVYSVGENKLSEPSDTTTVMTHEQRLHEINTLEWDDLLVKDEPFKPAMPKGDKLSCFDQQNQVPINATSNLLGEMSSFSNPVESTGRANGNISFTGSANLLLGGQTNLNIEKRESIAINSTDNLLDERLQSQDSFGRWINEVIIESPGSVIDPAIEPSISSVHNSYRDSTLYHSQTLAMEQIFNITDVSPTWAFSTEKTKILIIGYFQNDFVHLAKSNLLVVCGDTSVNVDFVQPGVYRCLVPPHAPGLVHLYVSVDGHKPISQALNFEYRAPNLEVPVVASEQSQKWEEFQIQMRLAHMLFSTSKILSIISTKLLPTALQEAKKLAVKTADISDSWIYLLKSITENRTPFQQAREGVLEIVLRSRLREWLIERVAEGSKKSTEFDVNGQGVIHLCAILGYTWAVHLFDWAGLSINFRDKFGWTALHWAAYYGRERMVAVLLSAGAKPNLVTDPSSKNPLGCTAADLASMNGYDGLAAYLSEKALVSHFKEMSLAGNVSGSLDTSSTITDASDCITEEQMYMKETLAAYRTAADAASRIQAAFREHSLKQRSDRIELSSPEDEARSIIAAMKIQHAYRNFETRKKMAAAARIQYRFRTWKIRKDFLNMRRQTIRIQAAFRGFQVRRQYRKIVWSVGVLEKAILRWRLKRKGFRGLQVAPTEMVEKQESDVEEDFYLVSQKQAEERVERAVVRVQAMFRSKKAQEEYRRMRLTCDEAALEYEVLSHPMYGND* 914
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22122448 22133251 + Chy11G201370.1 Chy11g01557 237318

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01557 913 SMART CG_1_2 32 150 IPR005559 GO:0003677
Chy11g01557 913 ProSiteProfiles IQ motif profile. 714 743 IPR000048 GO:0005515
Chy11g01557 913 ProSiteProfiles Ankyrin repeat region circular profile. 603 631 - -
Chy11g01557 913 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 20 907 - -
Chy11g01557 913 Gene3D Immunoglobulins 360 456 IPR013783 -
Chy11g01557 913 ProSiteProfiles CG-1 DNA-binding domain profile. 29 155 IPR005559 GO:0003677
Chy11g01557 913 SMART iq_5 789 811 IPR000048 GO:0005515
Chy11g01557 913 SMART iq_5 867 889 IPR000048 GO:0005515
Chy11g01557 913 SMART iq_5 766 788 IPR000048 GO:0005515
Chy11g01557 913 ProSiteProfiles Ankyrin repeat profile. 603 635 IPR002110 GO:0005515
Chy11g01557 913 Pfam CG-1 domain 35 148 IPR005559 GO:0003677
Chy11g01557 913 Pfam IQ calmodulin-binding motif 792 811 IPR000048 GO:0005515
Chy11g01557 913 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 6 20 907 - -
Chy11g01557 913 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 712 817 IPR027417 -
Chy11g01557 913 SMART ANK_2a 642 671 IPR002110 GO:0005515
Chy11g01557 913 SMART ANK_2a 603 632 IPR002110 GO:0005515
Chy11g01557 913 Gene3D - 500 666 IPR036770 -
Chy11g01557 913 ProSiteProfiles IQ motif profile. 790 814 IPR000048 GO:0005515
Chy11g01557 913 ProSiteProfiles IQ motif profile. 767 794 IPR000048 GO:0005515
Chy11g01557 913 Pfam IPT/TIG domain 367 452 IPR002909 -
Chy11g01557 913 Gene3D - 768 814 - -
Chy11g01557 913 CDD IPT 367 453 - -
Chy11g01557 913 Pfam Ankyrin repeats (3 copies) 552 632 IPR002110 GO:0005515
Chy11g01557 913 SUPERFAMILY E set domains 366 453 IPR014756 -
Chy11g01557 913 Coils Coil 881 901 - -
Chy11g01557 913 ProSiteProfiles IQ motif profile. 869 897 IPR000048 GO:0005515
Chy11g01557 913 SUPERFAMILY Ankyrin repeat 565 665 IPR036770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01557 K21596 CAMTA; calmodulin-binding transcription activator - csv:101211298 1758.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00678 Chy-Chr8:14639238 Chy11g01557 Chy-Chr11:22122448 6.47E-132 dispersed
Chy11g01557 Chy-Chr11:22122448 Chy11g01789 Chy-Chr11:24244590 4.31E-36 dispersed
Chy11g01557 Chy-Chr11:22122448 Chy01g00551 Chy-Chr1:3948107 5.59E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g92 Blo01g00054 . Bda03g01166 Bda08g00378 Bpe04g01108 . Bma04g01136 Bma05g01017 Cmo08g01236 Cmo17g00349 . . . . . . . . . . . . . . Cla06g00439 Cam06g0464 Cec06g0470 Cco06g0469 Clacu06g0451 Cmu06g0452 Cre06g1228 Cone14ag0727 . . . . Csa06g01752 Chy11g01557 . . . . . Bpe05g00817 . . . . . . Cma08g01266 Cma17g00358 Car08g01136 Car17g00331 Cpe12g00311 Cpe17g00057 Bhi12g01914 Tan06g2741 . Lac11g0922 . . Lcy12g0790 . . . . . . . Lsi09g01478 . . Cme11g02068
Vvi5g245 . . . . . . . . Cmo08g01236 Cmo17g00349 . Cma14g01565 . Car14g01381 . . Cpe03g01309 . . . . . . . . . . . . . . Cone14ag0685 Cone15ag0697 . . . . Chy11g01557 . . . . . . . . . . . Cmo14g01600 Cma08g01266 Cma17g00358 . Car17g00331 . . . . . . . . . . . . . . . . . . . Cme11g02068
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy01g00254 . 10 1089 CAMTA Transcription Factor Family AT5G64220 53.0 2.6e-270 928.7
Chy11g01789 . 5 933 CAMTA Transcription Factor Family AT1G67310 52.7 4.1e-257 884.8
Chy11g01557 . 34 905 CAMTA Transcription Factor Family AT3G16940 54.1 1.5e-257 885.9
Chy11g01557 . 11 627 CAMTA Transcription Factor Family AT4G16150 53.2 2.7e-191 666.0
Chy01g00254 . 10 1089 CAMTA Transcription Factor Family AT5G64220 53.0 2.6e-270 928.7
Chy11g01789 . 5 933 CAMTA Transcription Factor Family AT1G67310 52.7 4.1e-257 884.8
Chy11g01557 . 11 627 CAMTA Transcription Factor Family AT4G16150 53.2 2.7e-191 666.0
Chy11g01557 . 34 905 CAMTA Transcription Factor Family AT3G16940 54.1 1.5e-257 885.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005047 3 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18772 PF03859 CG-1 5.10E-45 No_clan Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01557 Chy_Chr11 FPKM 2.308465 0.0 2.894719 2.35631 4.055428 5.246615 4.047585 4.918434 4.024201 4.922699