Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01574 ATGGAGAAAGGTATGGGGAAGTTTGTGGATAGTTGCGTATTGGAAAACGAGCAAATCATGAGAAACGCGCCGCTGTCCTCTCTAGTCTCAGTGAACGACGAGCTGAAAATTGGAGGTAAGGGTTTTGCTGATCTTTGCTCATCGCCGTCGCCGATTTGTTTCGATTCTCAACAGAGACGCACCAAATTCTTTCGATTCTCACCACAAAATCACCAAAAATATTGTTGCGTTGTTCGTTTACAGAAAATGGAAGCTGGAGACGATGGAATCGAGAGGCTGGTTGATTCGAAGGATATGCAACAACAGAGCAAAGCCTTCGATAAGCTCACTGATCGCGTTGAAGACCGTCAACTCGATTCCACTCGTGTTCAGGAGGCAATGGCATCTATTGCTGCATCGGCTGAAGCCGATTGGAACGCTATGATGTTGAGAGAGAAAGAGCTTGCTGCTGTCAAGATAAATGCAGCTGACGTCGACATAATCGCAAATGAACTCGAGTTGGACAAGAAGGTTGCCGAAAGAACGTTGCGAGAGCACAAAGGCGACGCTGTTGCTGCTATACGATATTTACTACGTTAA 579 46.11 MEKGMGKFVDSCVLENEQIMRNAPLSSLVSVNDELKIGGKGFADLCSSPSPICFDSQQRRTKFFRFSPQNHQKYCCVVRLQKMEAGDDGIERLVDSKDMQQQSKAFDKLTDRVEDRQLDSTRVQEAMASIAASAEADWNAMMLREKELAAVKINAADVDIIANELELDKKVAERTLREHKGDAVAAIRYLLR* 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22296703 22299259 - Chy11G201540.1 Chy11g01574 237335

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01574 192 Pfam HYPK UBA domain 151 191 IPR044034 -
Chy11g01574 192 Coils Coil 162 182 - -
Chy11g01574 192 CDD UBA_HYPK 151 191 IPR038922 -
Chy11g01574 192 PANTHER BNAA05G30770D PROTEIN 87 191 - -
Chy11g01574 192 PANTHER HUNTINGTIN-INTERACTING PROTEIN K FAMILY MEMBER 87 191 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01574 - - - bhj:120092812 205.682
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g61 . . . . . . . . Cmo08g01245 Cmo17g00360 . . . . . . . . . . . . . . Cla06g00426 Cam06g0448 Cec06g0455 Cco06g0454 Clacu06g0435 Cmu06g0436 Cre06g1213 . . Cone7ag0099 Cone4ag0105 . Csa06g01869 Chy11g01574 . . Blo07g00143 Bda11g00499 . . Bpe13g00698 . Bma06g01465 Sed09g0311 . . . Cma17g00370 . Car17g00345 Cpe12g00325 . Bhi12g01936 Tan06g2768 Cmetu11g2114 . . . Lcy12g0853 . . . . . . . Lsi09g01494 . . Cme11g02083
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011014 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01574 Chy_Chr11 FPKM 4.264404 5.182046 6.842322 6.18936 10.156851 9.059355 9.548945 6.415622 7.180442 7.125116