Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01596 ATGGTGAAGGTACGGATGAACACCGCCGATGTCGCCGCCGAGGTGAAATGCCTCAAAAGATTAATAGGCATGCGATGCGCCAATGTCTATGATCTCTCGCCCAAGACGTATATGTTCAAGCTTATGAACAGTAGTGGAGTTACTGAATCGGGTGAGAGTGAGAAAGTGTTGCTGTTGATGGAAAGTGGAGTTAGATTGCATACGACTGAATATGTTCGAGACAAAAGCAATACTCCATCTGGGTTCACTCTCAAATTAAGAAAACATATACGCACAAGAAGACTTGAGGATGTGCGGCAACTTGGATATGATAGAATAATCCTATTTCAGTTTGGGCTAGGTGCTAGTGCGCACTATGTTATCCTGGAGCTGTATGCTCAGGGTAATATCCTTCTTACGGACTCTGAATTTATGGTCTTAACTCTTCTAAGATCACACAGGGACGATAATAAGGGGGTAGCAATCATGTCACGACATCGATATCCGACTGAAATTTCTCGAGTGTTTGAGAAGACGACAGCTGCAAAATTGCAGGAAGCACTCACTCTTAGTGACAATATAGTTAATGTTACAGGGAATGGGAATAATGAAACAGATCCTCCAAAGCAACAGGCGGGTAATCAAAAAGTCTCAAAAACTTCTGTCTCAAGTAAAGCTCAAGGCGATGGTAGTCGATCCAAACAGTCTACTCTGAAAGCTGTTCTTGGGGAGGCCCTGGGATATGGAACTGCACTATCTGAGCATATTATATTAAATGCCGGTCTGATTCCAAATATGAAACTTTGTAATGATAATAAACTTGATGATAATAGTCTTGATTGCTTAATGCAAGCTGTTGCAAATTTTGAGGATTGGCTCGAGGATGTAATATTTGGTACTAGAATTCCTGAGGGTTACATTTTGATGCAGAAGAAAGATGTTAAAAAAGAAGAATCTGAGGCTGCAACTGCGAACGAGATCTACGATGAGTTCTGCCCAATTTTATTAAACCAATTCATGTCTAGAAAGTATACAAAGTTTGAGACATTTGATGCAGCTTTGGATGAATTCTATAGTAAAATTGAGAGTCAAAGGTCAGAACAGCAACAAAAGGCCAAGGAGAGCTCTGCAACCCAGAAACTTAATAAAATACGTATGGATCAGGGAAACCGTGTAGAGTTGTTAAAACAAGAAGTTGATCATTCTGTAAAAATGGCAGAATTAATTGAATACAATTTAGAAGATGTAGATGCTGTTATATTAGCTGTCCGTGTTGCTCTTGCTAAGGGCATGAGTTGGGAGGATCTTGCACGAATGGTGAAGGAAGAAAAGAAATCTGGAAATCCAGTAGCTGGTCTTATTGACAAACTTAATCTTGAAAGGAATTGCATGACTTTGCTGCTGAGTAACAATCTTGATGAAATGGTTGATGATGAAAGGACACAACCGGTTGATAAGGTAGAGGTGGATATATCACTTTCAGCTCATGCCAATTCTCGGCGATGGTATGAACTTAAGAAAAAACAAGAGAGCAAACAGGAGAAAACAATCACTGCACATGAAAAAGCTTTCAAAGCTGCTGAAAGAAAAACTCGTCTTCAACTTTCCCAGGAAAAAACAGTTGCCACGATATCCCATATGCGCAAAGTTCATTGGTTTGAGAAATTTAATTGGTTCATCAGCAGTGAGAATTATTTGGTCATCAGTGGTCGTGATGCTCAACAAAATGAGATGATAGTCAAACGTTACATGTCAAAGGGAGATCTGTATGTCCATGCTGAGTTGCATGGAGCTTCTAGCACTGTGATTAAGAATCACAAGCCTGAACAACTAGTGCCTCCGCTCACGCTGAACCAAGCTGGATGTTTTACGGTTTGTCACAGCCAGGCATGGGATTCAAAGATAGTCACTAGTGCCTGGTGGGTTTATCCTCACCAGGTTAGTAAAACGGCGCCTACAGGGGAATATCTTACAGTTGGGAGTTTTATGATTAGAGGAAAAAAGAATTTTCTTCCCCCACATCCTCTTATCATGGGTTTTGGATTGTTGTTTCGCTTGGATGAGAGCTCCTTAGGTTCACATTTAAATGAAAGAAGGGTAAGAGGTGAGGAGGATGGAGTGAATGGTGTTGAAGAAAATGAACCTCTTAATGAAGAATCTGATATTGAATACGAGAAGAGGGAATCAGAAGTATCCAATAGATCTGCAAATTCATTTATTCCAGCTATATCTGGACCTGAAGGCACAGAATCACTTGAAATTCCCATTGAAGATATAATGACATTGAATGGTGTCAATAAGGATACCCAACCTAATGTTAGAGATAATGTTTCCCTTGTCACACCGCAACTTGAGGATCTCATTGATAAAGCTCTTGAGCTTGGATCTGCGACTGCATCTAGCAAAAGTTATATATTAGAGACTTCTAAGGTTGATTCGGTCGATGAACCCCGTCTAGATGATAAAAATGCTACAGGGAGAGAGAAACCTTACACCTCAAAAGCTGAAAGAAGAAAACTTAAGAAAGGTCAGAATAGCGGTTCTACAGACGGCAGCATCAAGCAGGAAAGTGAACAACCAAGAGATATTGATGTTTTGTCGAATCTTCCTCAGAACAAGGTTAATAATCCAAAGTTGGGTTCTGTGAAAATTAGCCGTGGTCAGAGGGGTAAACTCAAGAAAATGAAAGAAAAGTATGCCGATCAAGATGAAGAAGAAAGAAGCATCCGCATGGCTTTATTGGCTTCCTCAGGTAAGTTACCGAAAAATGAAGGGGGACAAAATGTGAAGGAAATAACTTCTGAAGTGAAGAAACCTGATGGAGGTGCTGAAGAAGCTTCAAAGATATGCTATAAATGTAAAAAGCCGGGTCATTTGTCTCGAGATTGCTCAGAACATCCCGATAATCTTTCACATAATCACTCAAATGGTGCAACTCAATACGATCGCCATGTCGTCTTGGATAATGATGCTGAATTGGACAAAATAACAATGGAAGAGGATGATATTCACGAAATAGGCGAAGAAGAGCGAGAAAAACTGAATGACGTGGATTACTTGACTGGAAATCCTTTGGCTACGGACATTCTTTTGTATGCTGTGCCAGTCTGCGGTCCGTACAATGCAGTGCAATCTTACAAATACCATGTCAAGATTGTTCCAGGACCTCTCAAGAAAGGGAAAGCTGCAAAAACTGCCTTGAACCTGTTCACACATATGCCTGAAGCAACGACAAGAGAGAAAGAACTGATCAAAGCATGCACAGATCCAGAGCTTGTTGCTGCCATCATCGGGAATGCTCGGGTTACCGCGGCCGGTCTCACTCAGTTAAAGCAGAAGCAGAAAAAGGGAAAGAAAAGCAGCAAGCAAGGAAGCTAG 3357 40.87 MVKVRMNTADVAAEVKCLKRLIGMRCANVYDLSPKTYMFKLMNSSGVTESGESEKVLLLMESGVRLHTTEYVRDKSNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIILFQFGLGASAHYVILELYAQGNILLTDSEFMVLTLLRSHRDDNKGVAIMSRHRYPTEISRVFEKTTAAKLQEALTLSDNIVNVTGNGNNETDPPKQQAGNQKVSKTSVSSKAQGDGSRSKQSTLKAVLGEALGYGTALSEHIILNAGLIPNMKLCNDNKLDDNSLDCLMQAVANFEDWLEDVIFGTRIPEGYILMQKKDVKKEESEAATANEIYDEFCPILLNQFMSRKYTKFETFDAALDEFYSKIESQRSEQQQKAKESSATQKLNKIRMDQGNRVELLKQEVDHSVKMAELIEYNLEDVDAVILAVRVALAKGMSWEDLARMVKEEKKSGNPVAGLIDKLNLERNCMTLLLSNNLDEMVDDERTQPVDKVEVDISLSAHANSRRWYELKKKQESKQEKTITAHEKAFKAAERKTRLQLSQEKTVATISHMRKVHWFEKFNWFISSENYLVISGRDAQQNEMIVKRYMSKGDLYVHAELHGASSTVIKNHKPEQLVPPLTLNQAGCFTVCHSQAWDSKIVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGLLFRLDESSLGSHLNERRVRGEEDGVNGVEENEPLNEESDIEYEKRESEVSNRSANSFIPAISGPEGTESLEIPIEDIMTLNGVNKDTQPNVRDNVSLVTPQLEDLIDKALELGSATASSKSYILETSKVDSVDEPRLDDKNATGREKPYTSKAERRKLKKGQNSGSTDGSIKQESEQPRDIDVLSNLPQNKVNNPKLGSVKISRGQRGKLKKMKEKYADQDEEERSIRMALLASSGKLPKNEGGQNVKEITSEVKKPDGGAEEASKICYKCKKPGHLSRDCSEHPDNLSHNHSNGATQYDRHVVLDNDAELDKITMEEDDIHEIGEEEREKLNDVDYLTGNPLATDILLYAVPVCGPYNAVQSYKYHVKIVPGPLKKGKAAKTALNLFTHMPEATTREKELIKACTDPELVAAIIGNARVTAAGLTQLKQKQKKGKKSSKQGS* 1119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22528493 22542645 + Chy11G201760.1 Chy11g01596 237357

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01596 1118 MobiDBLite consensus disorder prediction 188 228 - -
Chy11g01596 1118 Gene3D - 935 980 - -
Chy11g01596 1118 Pfam NFACT protein RNA binding domain 548 659 IPR008532 -
Chy11g01596 1118 Gene3D ibrinogen binding protein from staphylococcus aureus domain 6 163 - -
Chy11g01596 1118 ProSiteProfiles Zinc finger CCHC-type profile. 943 958 IPR001878 GO:0003676|GO:0008270
Chy11g01596 1118 MobiDBLite consensus disorder prediction 809 854 - -
Chy11g01596 1118 SMART c2hcfinal6 942 958 IPR001878 GO:0003676|GO:0008270
Chy11g01596 1118 PANTHER - 3 1106 - -
Chy11g01596 1118 MobiDBLite consensus disorder prediction 691 723 - -
Chy11g01596 1118 Pfam Zinc knuckle 942 957 IPR001878 GO:0003676|GO:0008270
Chy11g01596 1118 SUPERFAMILY Retrovirus zinc finger-like domains 933 964 IPR036875 GO:0003676|GO:0008270
Chy11g01596 1118 Pfam NFACT N-terminal and middle domains 10 161 - -
Chy11g01596 1118 Pfam NFACT N-terminal and middle domains 200 538 - -
Chy11g01596 1118 Pfam NFACT protein C-terminal domain 1004 1095 IPR021846 -
Chy11g01596 1118 MobiDBLite consensus disorder prediction 809 837 - -
Chy11g01596 1118 PANTHER NUCLEAR EXPORT MEDIATOR FACTOR NEMF 3 1106 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01596 K24971 NEMF, RQC2; nuclear export mediator factor NEMF - csv:101208866 2095.86
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g26 Blo01g00045 . . Bda08g00319 . . . Bma05g01011 . Cmo17g00377 . . . . . . . . . . . . . . Cla06g00407 Cam06g0429 Cec06g0436 Cco06g0435 Clacu06g0415 Cmu06g0415 Cre06g1195 . . . . . . Chy11g01596 . . . . . Bpe05g00809 . . . . . . . Cma17g00388 . Car17g00358 Cpe12g00339 . Bhi12g01957 . . . . . Lcy12g0885 . . . . . . . Lsi09g01512 . . Cme11g02101
Vvi5g211 . . . . . . . . . Cmo17g00377 . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy11g01596 . . . . . . . . . . . . . Cma17g00388 . Car17g00358 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009988 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 3 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01596 Chy_Chr11 FPKM 47.073051 48.266418 81.899567 85.254677 113.00705 105.647186 117.564278 126.983109 123.724205 132.158157