Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01602 ATGGTAGCCGAAGCTGAGATCAAATGCCCTAAATCCCTTCCTCTTATGAAAATCAACTACCATCTTCGTGTTGCCGATGATCGCGATCTTCAGACTGATTTGCCGCACCCTTCTTCCTCACCTGTCTTTTCCCAGGCAGTTAATTGTTCGGATATCGTTGAAGATGTGCATATAAAATCAGCTTCCATAGATTTTGTTCCAAACATTCGGTCTGGTAGCTATGCAGACATTGGAGCTCGGGATTCTATGGATGATGAACATGTCTGCATAGATGACCTGTCTGCCCATCTCCGATCTATGTTCAAATGTTCTATGCCGAAAGGTTTCTATGCCGTGTTTGATGGTCACGGAGGGCCTCATGCAGCTGCTTTTGTCAAGAGGAATGTCTTGAGACTATTCTTTGAAGATGCCGATTGGTTAAAAATGCAGGACATTGATTCTATTTCCCTGAAAGATTTGGAGAACTCTCATCGCAGAGCATTCCAACTGGCAGATCTTGCCTTGGCTGAAGAGCAAAGTGTTAGCAGCTCGTGTGGGACAACTGCATTGACGGCATTGGTTCTTGGGAGGCATTTGCTTGTTGCAAATGCTGGTGACTGCCGAGCAGTCCTATGTAGGAAAGGTATAGCAGTCCCAATGTCTGAAGATCACAGACCTTCTAATTTACTCGAGCTCAAGCGAGTGGAAGGAATGGGCGGGTTTGTAGATGACGGGTATGTTAATGGCTATATTTCAGTAACCAGGACCTTAGGGGATTGGGACTTGAAATTGCCAAATGTCTCCTCATCACCTCTCATTGCTGAGCCACAAGTGGAGCATGTTATATTAACAAACGACGACGAGTTCTTGATTCTCGGATGTGATGGGATATGGGACGTTATGTCGAGCCAATATGCTGTAAGTCTCGTTCGACGAGGGTTGAGGAAGCACAACGATCCTCATCAAAGTTCCCAAGAATTAGTCCAGGAAGCTTTGCGCCTCAACACATCGGATAATCTTACTGCAATCGTTATCTGCTTTTCTTCTTCCAGCTGTGCTCCTCAGCCGCGAATATGCAAGTCGTGTAATCTGACAGAAGATGCTACAAATAGATTGAGGAGCTTGTTAGAAGGTAACTGA 1119 45.31 MVAEAEIKCPKSLPLMKINYHLRVADDRDLQTDLPHPSSSPVFSQAVNCSDIVEDVHIKSASIDFVPNIRSGSYADIGARDSMDDEHVCIDDLSAHLRSMFKCSMPKGFYAVFDGHGGPHAAAFVKRNVLRLFFEDADWLKMQDIDSISLKDLENSHRRAFQLADLALAEEQSVSSSCGTTALTALVLGRHLLVANAGDCRAVLCRKGIAVPMSEDHRPSNLLELKRVEGMGGFVDDGYVNGYISVTRTLGDWDLKLPNVSSSPLIAEPQVEHVILTNDDEFLILGCDGIWDVMSSQYAVSLVRRGLRKHNDPHQSSQELVQEALRLNTSDNLTAIVICFSSSSCAPQPRICKSCNLTEDATNRLRSLLEGN* 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22569796 22572765 - Chy11G201820.1 Chy11g01602 237363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01602 372 SMART PP2C_SIG_2 85 340 IPR001932 -
Chy11g01602 372 ProSitePatterns PPM-type phosphatase domain signature. 109 117 IPR000222 GO:0043169
Chy11g01602 372 Gene3D - 54 345 IPR036457 -
Chy11g01602 372 PANTHER PROTEIN PHOSPHATASE 2C 1 356 IPR015655 GO:0004722|GO:0006470
Chy11g01602 372 SMART PP2C_4 60 338 IPR001932 -
Chy11g01602 372 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 1 356 - -
Chy11g01602 372 ProSiteProfiles PPM-type phosphatase domain profile. 70 340 IPR001932 -
Chy11g01602 372 Pfam Protein phosphatase 2C 78 332 IPR001932 -
Chy11g01602 372 CDD PP2Cc 69 340 IPR001932 -
Chy11g01602 372 SUPERFAMILY PP2C-like 62 341 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00407 Chy-Chr7:3226570 Chy11g01602 Chy-Chr11:22569796 2.41E-88 dispersed
Chy11g01602 Chy-Chr11:22569796 Chy07g00305 Chy-Chr7:2510023 5.86E-42 dispersed
Chy02g02336 Chy-Chr2:27308917 Chy11g01602 Chy-Chr11:22569796 7.61E-29 transposed
Chy01g01787 Chy-Chr1:23499833 Chy11g01602 Chy-Chr11:22569796 2.51E-130 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18774 PF00481 PP2C 5.50E-65 CL0238 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01602 K14803 - csv:101207477 741.88